Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases Cancer
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations Nucleoli
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000163565 Gene ID 3428 Accession 5395
Symbol IFI16 Alias PYHIN2;IFNGIP1 Full Name interferon gamma inducible protein 16
Status Confidence Length 55188 bases Strand Plus strand
Position 1 : 158999968 - 159055155 RNA binding domain N.A.
Summary This gene encodes a member of the HIN-200 (hematopoietic interferon-inducible nuclear antigens with 200 amino acid repeats) family of cytokines. The encoded protein contains domains involved in DNA binding, transcriptional regulation, and protein-protein interactions. The protein localizes to the nucleoplasm and nucleoli, and interacts with p53 and retinoblastoma-1. It modulates p53 function, and inhibits cell growth in the Ras/Raf signaling pathway. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2011]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
35072006 Innate immune sensing of influenza A viral RNA through IFI16 promotes pyroptotic cell death. Shalabh Mishra 2022-01-21 iScience
33208978 Global analysis of RNA-binding protein dynamics by comparative and enhanced RNA interactome capture. I Joel Perez-Perri 2021-01-01 Nature protocols
37077526 Interplay between RNA viruses and cGAS/STING axis in innate immunity. Lucia Amurri 2023-01-01 Frontiers in cellular and infection microbiology
30799147 System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Manuel Garcia-Moreno 2019-04-04 Molecular cell
32380061 Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP. Byungil Kim 2020-05-21 Molecular cell
26907212 Autoantigens as Partners in Initiation and Propagation of Autoimmune Rheumatic Diseases. Antony Rosen 2016-05-20 Annual review of immunology
25371285 2014 Colorado alphaherpesvirus latency symposium. J Randall Cohrs 2014-12-01 Journal of neurovirology
28073693 Crosstalk between Cytoplasmic RIG-I and STING Sensing Pathways. Alessandra Zevini 2017-03-01 Trends in immunology
26121674 BRCA1 Regulates IFI16 Mediated Nuclear Innate Sensing of Herpes Viral DNA and Subsequent Induction of the Innate Inflammasome and Interferon-β Responses. Dipanjan Dutta 2015-06-01 PLoS pathogens
29132393 Interferon-γ-inducible protein 16 (IFI16) is required for the maintenance of Epstein-Barr virus latency. Gina Pisano 2017-11-13 Virology journal
26134128 Herpesvirus Genome Recognition Induced Acetylation of Nuclear IFI16 Is Essential for Its Cytoplasmic Translocation, Inflammasome and IFN-β Responses. Ahmed Mairaj Ansari 2015-07-01 PLoS pathogens
25375629 IFI16 restricts HSV-1 replication by accumulating on the hsv-1 genome, repressing HSV-1 gene expression, and directly or indirectly modulating histone modifications. E Karen Johnson 2014-11-01 PLoS pathogens

Transcripts

Name Transcript ID bp Protein Translation ID
IFI16-212 ENST00000566111 856 83aa ENSP00000458084
IFI16-205 ENST00000426592 761 167aa ENSP00000406406
IFI16-206 ENST00000447473 951 180aa ENSP00000407052
IFI16-203 ENST00000368131 2734 729aa ENSP00000357113
IFI16-201 ENST00000295809 2883 785aa ENSP00000295809
IFI16-204 ENST00000368132 2704 729aa ENSP00000357114
IFI16-209 ENST00000483916 4138 No protein -
IFI16-210 ENST00000493884 4138 No protein -
IFI16-202 ENST00000359709 2609 729aa ENSP00000352740
IFI16-207 ENST00000448393 2245 673aa ENSP00000404325
IFI16-213 ENST00000567661 546 74aa ENSP00000456094
IFI16-208 ENST00000474473 1095 229aa ENSP00000456129
IFI16-211 ENST00000562225 1108 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
37479Platelet Function Tests4.2500000E-007-
39831Platelet Function Tests3.4000000E-006-
59433Blood Pressure9.2912734E-005-
60207Blood Pressure1.3910835E-007-
73386Leukocyte Count5E-4723263863
74523Autoimmune Diseases8E-721383967
88822Energy Intake1E-623251661
101259Periodontitis3E-826962152
101260Tooth3E-826962152
101355Neutrophils3E-625884002
101356HIV-13E-625884002

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000163565homo_sapiensENSP0000035712254.06543.0894homo_sapiensENSP0000029580933.885327.0064
ENSG00000163565homo_sapiensENSP0000035712361.670842.2604homo_sapiensENSP0000029580931.974521.9108
ENSG00000163565homo_sapiensENSP0000035711252.478136.4431homo_sapiensENSP0000029580922.929915.9236

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000163565homo_sapiensENSP0000029580986.24282.6752nomascus_leucogenysENSNLEP0000001595793.637689.7649
ENSG00000163565homo_sapiensENSP0000029580991.847191.2102pan_paniscusENSPPAP0000001341898.362997.6808
ENSG00000163565homo_sapiensENSP0000029580997.070195.0318pongo_abeliiENSPPYP0000000077496.577994.5501
ENSG00000163565homo_sapiensENSP0000029580991.974591.3376pan_troglodytesENSPTRP0000006559698.499397.8172
ENSG00000163565homo_sapiensENSP0000029580998.726197.8344gorilla_gorillaENSGGOP0000000599498.726197.8344
ENSG00000163565homo_sapiensENSP0000029580923.566914.3949sarcophilus_harrisiiENSSHAP0000000643148.941829.8942
ENSG00000163565homo_sapiensENSP0000029580985.732582.4204cercocebus_atysENSCATP0000001564492.318288.7517
ENSG00000163565homo_sapiensENSP0000029580983.94979.7452macaca_fascicularisENSMFAP0000002909685.807381.5104
ENSG00000163565homo_sapiensENSP0000029580985.732582.1656macaca_mulattaENSMMUP0000000598592.318288.4774
ENSG00000163565homo_sapiensENSP0000029580985.859981.9108macaca_nemestrinaENSMNEP0000003035792.455488.203
ENSG00000163565homo_sapiensENSP0000029580985.477781.4013papio_anubisENSPANP0000001118592.551788.1379
ENSG00000163565homo_sapiensENSP0000029580985.605182.1656mandrillus_leucophaeusENSMLEP0000002024092.181188.4774
ENSG00000163565homo_sapiensENSP0000029580927.770719.8726tursiops_truncatusENSTTRP0000000175544.672131.9672
ENSG00000163565homo_sapiensENSP0000029580928.407619.8726vulpes_vulpesENSVVUP0000002233142.557329.771
ENSG00000163565homo_sapiensENSP000002958099.681537.38854mus_spretusMGP_SPRETEiJ_P002245756.296342.963
ENSG00000163565homo_sapiensENSP0000029580920.636911.0828mus_spretusMGP_SPRETEiJ_P002246036.404519.5506
ENSG00000163565homo_sapiensENSP0000029580922.675216.4331equus_asinusENSEASP0000500439042.180130.5687
ENSG00000163565homo_sapiensENSP0000029580930.191122.5478equus_asinusENSEASP0000500436645.315533.8432
ENSG00000163565homo_sapiensENSP0000029580928.53521.2739equus_asinusENSEASP0000500436043.664732.5536
ENSG00000163565homo_sapiensENSP0000029580932.356724.2038equus_asinusENSEASP0000505076744.639733.3919
ENSG00000163565homo_sapiensENSP0000029580927.643321.1465capra_hircusENSCHIP0000001810341.650731.8618
ENSG00000163565homo_sapiensENSP0000029580928.280319.4904panthera_leoENSPLOP0000002728647.435932.6923
ENSG00000163565homo_sapiensENSP0000029580932.484122.9299ailuropoda_melanoleucaENSAMEP0000003052439.230827.6923
ENSG00000163565homo_sapiensENSP0000029580926.24218.9809bos_indicus_hybridENSBIXP0000501267544.111331.9058
ENSG00000163565homo_sapiensENSP0000029580930.318522.4204equus_caballusENSECAP0000003956545.506733.652
ENSG00000163565homo_sapiensENSP0000029580931.974523.8217equus_caballusENSECAP0000001235145.225233.6937
ENSG00000163565homo_sapiensENSP0000029580924.458618.5987equus_caballusENSECAP0000002966442.477932.3009
ENSG00000163565homo_sapiensENSP0000029580929.299421.6561equus_caballusENSECAP0000001362244.834333.1384
ENSG00000163565homo_sapiensENSP0000029580912.22938.40764panthera_pardusENSPPRP0000000235536.781625.2874
ENSG00000163565homo_sapiensENSP0000029580932.738922.1656marmota_marmota_marmotaENSMMMP0000002566931.303321.1937
ENSG00000163565homo_sapiensENSP0000029580912.10199.80892marmota_marmota_marmotaENSMMMP0000002566740.772533.0472
ENSG00000163565homo_sapiensENSP0000029580931.46521.9108balaenoptera_musculusENSBMSP0001000513544.746431.1594
ENSG00000163565homo_sapiensENSP000002958094.840764.20382cavia_porcellusENSCPOP0000001466927.142923.5714
ENSG00000163565homo_sapiensENSP0000029580929.426820.3822felis_catusENSFCAP0000006114333.771923.3918
ENSG00000163565homo_sapiensENSP0000029580923.439517.0701ursus_americanusENSUAMP0000003508446.115333.584
ENSG00000163565homo_sapiensENSP0000029580924.58616.051monodelphis_domesticaENSMODP0000003904348.492531.6583
ENSG00000163565homo_sapiensENSP0000029580928.280320.6369bison_bison_bisonENSBBBP0000001369642.366430.916
ENSG00000163565homo_sapiensENSP0000029580929.681521.5287monodon_monocerosENSMMNP0001500997744.045431.9471
ENSG00000163565homo_sapiensENSP0000029580930.82821.4013sus_scrofaENSSSCP0000003449741.367528.7179
ENSG00000163565homo_sapiensENSP0000029580959.745247.5159microcebus_murinusENSMICP0000002933852.343841.6295
ENSG00000163565homo_sapiensENSP000002958095.095544.33121octodon_degusENSODEP0000001209927.97223.7762
ENSG00000163565homo_sapiensENSP0000029580922.165616.3057jaculus_jaculusENSJJAP0000001239942.130730.9927
ENSG00000163565homo_sapiensENSP0000029580928.152921.2739ovis_aries_rambouilletENSOARP0002001150142.418432.0537
ENSG00000163565homo_sapiensENSP0000029580932.101922.0382ursus_maritimusENSUMAP0000000198834.710723.8292
ENSG00000163565homo_sapiensENSP0000029580929.936321.5287delphinapterus_leucasENSDLEP0000001709244.339631.8868
ENSG00000163565homo_sapiensENSP0000029580930.318521.9108physeter_catodonENSPCTP0000500377244.652932.2702
ENSG00000163565homo_sapiensENSP0000029580910.06377.64331mus_caroliMGP_CAROLIEiJ_P002137658.518544.4444
ENSG00000163565homo_sapiensENSP0000029580917.324810.7006mus_caroliMGP_CAROLIEiJ_P002137428.041217.3196
ENSG00000163565homo_sapiensENSP0000029580910.70068.40764mus_caroliMGP_CAROLIEiJ_P002137938.356230.137
ENSG00000163565homo_sapiensENSP0000029580921.019114.3949mus_caroliMGP_CAROLIEiJ_P002138039.285726.9048
ENSG00000163565homo_sapiensENSP0000029580916.560510.0637mus_caroliMGP_CAROLIEiJ_P002137528.260917.1739
ENSG00000163565homo_sapiensENSP0000029580930.700619.1083mus_caroliMGP_CAROLIEiJ_P002138425.502615.873
ENSG00000163565homo_sapiensENSP0000029580930.573223.3121mus_caroliMGP_CAROLIEiJ_P002138743.478333.1522
ENSG00000163565homo_sapiensENSP0000029580930.82818.5987mus_musculusENSMUSP0000004812924.744414.9284
ENSG00000163565homo_sapiensENSP0000029580920.764314.0127mus_musculusENSMUSP0000006190038.809526.1905
ENSG00000163565homo_sapiensENSP0000029580930.700618.3439mus_musculusENSMUSP0000012242427.669316.5327
ENSG00000163565homo_sapiensENSP0000029580916.68799.80892mus_musculusENSMUSP0000011722222.354913.1399
ENSG00000163565homo_sapiensENSP0000029580936.815328.0255mus_musculusENSMUSP0000010684546.688235.5412
ENSG00000163565homo_sapiensENSP0000029580930.191117.3248mus_musculusENSMUSP0000013464625.732914.7666
ENSG00000163565homo_sapiensENSP0000029580920.509611.2102mus_musculusENSMUSP0000000026636.179819.7753
ENSG00000163565homo_sapiensENSP0000029580911.84718.28025mus_musculusENSMUSP0000011510542.465829.6804
ENSG00000163565homo_sapiensENSP0000029580917.70710.5732mus_musculusENSMUSP0000008303923.639514.1156
ENSG00000163565homo_sapiensENSP000002958095.222934.71338dipodomys_ordiiENSDORP0000002432128.873226.0563
ENSG00000163565homo_sapiensENSP0000029580929.936322.1656mustela_putorius_furoENSMPUP0000001298844.847333.2061
ENSG00000163565homo_sapiensENSP0000029580986.496882.1656chlorocebus_sabaeusENSCSAP0000001560093.269288.5989
ENSG00000163565homo_sapiensENSP0000029580925.350318.0892tupaia_belangeriENSTBEP0000001165548.655334.7188
ENSG00000163565homo_sapiensENSP0000029580912.22938.28025mesocricetus_auratusENSMAUP000000037273020.3125
ENSG00000163565homo_sapiensENSP0000029580920.891714.2675mesocricetus_auratusENSMAUP0000000880939.328526.8585
ENSG00000163565homo_sapiensENSP000002958093.184712.67516mesocricetus_auratusENSMAUP0000001203317.482514.6853
ENSG00000163565homo_sapiensENSP0000029580929.426821.0191phocoena_sinusENSPSNP0000000565143.584931.1321
ENSG00000163565homo_sapiensENSP0000029580929.17220.5096camelus_dromedariusENSCDRP0000501455044.379831.2015
ENSG00000163565homo_sapiensENSP0000029580912.35678.40764panthera_tigris_altaicaENSPTIP0000000147237.164725.2874
ENSG00000163565homo_sapiensENSP0000029580928.917217.5796rattus_norvegicusENSRNOP0000009597027.990117.016
ENSG00000163565homo_sapiensENSP0000029580910.31856.75159rattus_norvegicusENSRNOP0000009212359.124138.6861
ENSG00000163565homo_sapiensENSP0000029580929.17217.707rattus_norvegicusENSRNOP0000008948626.6916.2005
ENSG00000163565homo_sapiensENSP0000029580949.554139.2357prolemur_simusENSPSMP0000002412151.319340.6332
ENSG00000163565homo_sapiensENSP0000029580920.509614.3949microtus_ochrogasterENSMOCP0000002176438.424826.969
ENSG00000163565homo_sapiensENSP0000029580910.19117.7707microtus_ochrogasterENSMOCP0000001560943.478333.1522
ENSG00000163565homo_sapiensENSP0000029580928.280316.8153peromyscus_maniculatus_bairdiiENSPEMP0000003157526.682715.8654
ENSG00000163565homo_sapiensENSP0000029580930.955416.9427peromyscus_maniculatus_bairdiiENSPEMP0000003562830.299316.5835
ENSG00000163565homo_sapiensENSP0000029580928.407620.8917bos_mutusENSBMUP0000000010842.802331.4779
ENSG00000163565homo_sapiensENSP000002958094.840763.43949mus_spicilegusENSMSIP0000000607322.352915.8824
ENSG00000163565homo_sapiensENSP0000029580920.636914.0127mus_spicilegusENSMSIP0000003841138.571426.1905
ENSG00000163565homo_sapiensENSP000002958099.681537.38854mus_spicilegusENSMSIP0000003840956.296342.963
ENSG00000163565homo_sapiensENSP0000029580910.06377.64331mus_spicilegusENSMSIP0000003841357.664243.7956
ENSG00000163565homo_sapiensENSP000002958094.585993.82166mus_spicilegusENSMSIP0000000844817.647114.7059
ENSG00000163565homo_sapiensENSP000002958093.694273.3121mus_spicilegusENSMSIP0000000888722.656220.3125
ENSG00000163565homo_sapiensENSP0000029580930.445918.3439mus_spicilegusENSMSIP0000003840625.344615.2704
ENSG00000163565homo_sapiensENSP000002958093.184712.67516cricetulus_griseus_chok1gshdENSCGRP0000102806217.361114.5833
ENSG00000163565homo_sapiensENSP0000029580911.4658.66242cricetulus_griseus_chok1gshdENSCGRP0000102265229.126222.0065
ENSG00000163565homo_sapiensENSP0000029580920.891715.0318cricetulus_griseus_chok1gshdENSCGRP0000102724740.294828.9926
ENSG00000163565homo_sapiensENSP0000029580923.94915.0318vombatus_ursinusENSVURP0001000329149.604231.1346
ENSG00000163565homo_sapiensENSP0000029580924.076417.4522neovison_visonENSNVIP0000002846543.851531.7865
ENSG00000163565homo_sapiensENSP0000029580928.407621.0191bos_taurusENSBTAP0000001529742.557331.4886
ENSG00000163565homo_sapiensENSP0000029580926.369418.4713heterocephalus_glaber_femaleENSHGLP0000001364137.568126.3158
ENSG00000163565homo_sapiensENSP0000029580987.133883.1847rhinopithecus_bietiENSRBIP0000001973293.827289.5748
ENSG00000163565homo_sapiensENSP0000029580927.770719.4904canis_lupus_dingoENSCAFP0002002501446.581232.6923
ENSG00000163565homo_sapiensENSP0000029580926.751618.2166sciurus_vulgarisENSSVLP0000500784933.280522.6624
ENSG00000163565homo_sapiensENSP0000029580915.54149.93631phascolarctos_cinereusENSPCIP0000000093042.957727.4648
ENSG00000163565homo_sapiensENSP0000029580932.229324.9682procavia_capensisENSPCAP0000001066032.477525.1605
ENSG00000163565homo_sapiensENSP0000029580928.407620.8917bos_grunniensENSBGRP0000001909842.802331.4779
ENSG00000163565homo_sapiensENSP000002958095.60515.09554chinchilla_lanigeraENSCLAP0000001722530.985928.169
ENSG00000163565homo_sapiensENSP0000029580928.280320.6369cervus_hanglu_yarkandensisENSCHYP0000002045342.205330.7985
ENSG00000163565homo_sapiensENSP0000029580929.299421.2739catagonus_wagneriENSCWAP0000002115943.643331.6888
ENSG00000163565homo_sapiensENSP0000029580921.146517.1975ictidomys_tridecemlineatusENSSTOP0000002647348.255839.2442
ENSG00000163565homo_sapiensENSP0000029580958.216644.7134otolemur_garnettiiENSOGAP0000000569957.994944.5431
ENSG00000163565homo_sapiensENSP0000029580921.656117.8344urocitellus_parryiiENSUPAP0001001353341.463434.1463
ENSG00000163565homo_sapiensENSP0000029580923.057315.6688moschus_moschiferusENSMMSP0000002417636.127724.5509
ENSG00000163565homo_sapiensENSP0000029580987.133883.1847rhinopithecus_roxellanaENSRROP0000001632593.827289.5748
ENSG00000163565homo_sapiensENSP000002958099.808927.89809mus_pahariMGP_PahariEiJ_P007664060.156248.4375
ENSG00000163565homo_sapiensENSP0000029580916.05110.0637mus_pahariMGP_PahariEiJ_P007663932.390720.3085
ENSG00000163565homo_sapiensENSP0000029580911.4658.15287mus_pahariMGP_PahariEiJ_P007664341.095929.2237
ENSG00000163565homo_sapiensENSP0000029580920.509614.5223mus_pahariMGP_PahariEiJ_P007664538.242327.0784
ENSG00000163565homo_sapiensENSP0000029580916.05110.0637mus_pahariMGP_PahariEiJ_P007663830.882419.3627

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000122involved_in negative regulation of transcription by RNA polymerase II2IDA,IMPHomo_sapiens(9606)Process
GO:0001819involved_in positive regulation of cytokine production1TASHomo_sapiens(9606)Process
GO:0002218involved_in activation of innate immune response2IBA,IDAHomo_sapiens(9606)Process
GO:0003690enables double-stranded DNA binding2IBA,IDAHomo_sapiens(9606)Function
GO:0003723enables RNA binding1HDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005654is_active_in nucleoplasm2IBA,IDAHomo_sapiens(9606)Component
GO:0005730is_active_in nucleolus2IBA,IDAHomo_sapiens(9606)Component
GO:0005829is_active_in cytosol4IBA,IDA,IPI,TASHomo_sapiens(9606)Component
GO:0006914involved_in autophagy1IEAHomo_sapiens(9606)Process
GO:0006954involved_in inflammatory response1IEAHomo_sapiens(9606)Process
GO:0008134enables transcription factor binding1IDAHomo_sapiens(9606)Function
GO:0010506involved_in regulation of autophagy1IEPHomo_sapiens(9606)Process
GO:0016020located_in membrane1HDAHomo_sapiens(9606)Component
GO:0016607located_in nuclear speck1IDAHomo_sapiens(9606)Component
GO:0030099involved_in myeloid cell differentiation1NASHomo_sapiens(9606)Process
GO:0030224involved_in monocyte differentiation1IDAHomo_sapiens(9606)Process
GO:0032731involved_in positive regulation of interleukin-1 beta production1IDAHomo_sapiens(9606)Process
GO:0035458involved_in cellular response to interferon-beta1IBAHomo_sapiens(9606)Process
GO:0040029involved_in epigenetic regulation of gene expression1IMPHomo_sapiens(9606)Process
GO:0042149involved_in cellular response to glucose starvation1IDAHomo_sapiens(9606)Process
GO:0042771acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator1IDAHomo_sapiens(9606)Process
GO:0043392involved_in negative regulation of DNA binding1IDAHomo_sapiens(9606)Process
GO:0045071involved_in negative regulation of viral genome replication1IDAHomo_sapiens(9606)Process
GO:0045087involved_in innate immune response1IEAHomo_sapiens(9606)Process
GO:0045824involved_in negative regulation of innate immune response1IDAHomo_sapiens(9606)Process
GO:0045892involved_in negative regulation of DNA-templated transcription1IDAHomo_sapiens(9606)Process
GO:0045944involved_in positive regulation of transcription by RNA polymerase II2IDA,IMPHomo_sapiens(9606)Process
GO:0051607involved_in defense response to virus2IDA,IMPHomo_sapiens(9606)Process
GO:0071479involved_in cellular response to ionizing radiation1IDAHomo_sapiens(9606)Process
GO:0072332involved_in intrinsic apoptotic signaling pathway by p53 class mediator1IMPHomo_sapiens(9606)Process
GO:0097202involved_in activation of cysteine-type endopeptidase activity1IMPHomo_sapiens(9606)Process
GO:2000117involved_in negative regulation of cysteine-type endopeptidase activity1IDAHomo_sapiens(9606)Process

Expression