RBPWorld - a comprehensive database of RNA Binding Proteins

Human RBPs binding to SARS-CoV-2 RNA virus

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Ensembl ID	Gene symbol	PMID33743211_ChIRPMS_H.S.v__CoV-2	PMID30799147_cRIC_293T_H.S.v__CoV-2	PMID34509361_H.S.v__CoV-2	PMID33989516_RNPcapture_H.S.v__CoV-2	PMID34737357_ChIRP_MS_H.S.v__Cov-2	Nora_Huh7_2020	PMID35451177_PCAX_MS_H.S.v__CoV-2	PMID35477000_ChIRPMS_H.S.v__CoV-2	Ryan_Huh7_2021	Disease

Ensembl ID	Gene symbol	PMID33743211_ChIRPMS_H.S.v__CoV-2	PMID30799147_cRIC_293T_H.S.v__CoV-2	PMID34509361_H.S.v__CoV-2	PMID33989516_RNPcapture_H.S.v__CoV-2	PMID34737357_ChIRP_MS_H.S.v__Cov-2	Nora_Huh7_2020	PMID35451177_PCAX_MS_H.S.v__CoV-2	PMID35477000_ChIRPMS_H.S.v__CoV-2	Ryan_Huh7_2021	Disease
ENSG00000004478	FKBP4	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000004864	SLC25A13	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE
ENSG00000005007	UPF1	TRUE	TRUE	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	TRUE
ENSG00000005022	SLC25A5	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	N.A.
ENSG00000005156	LIG3	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000007392	LUC7L	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000008128	CDK11A	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000008988	RPS20	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	N.A.
ENSG00000009307	CSDE1	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	N.A.
ENSG00000011243	AKAP8L	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000011304	PTBP1	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	TRUE	TRUE	TRUE	N.A.
ENSG00000014641	MDH1	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000015479	MATR3	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE
ENSG00000021776	AQR	TRUE	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000023191	RNH1	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000023318	ERP44	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	N.A.
ENSG00000023734	STRAP	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	N.A.
ENSG00000025796	SEC63	TRUE	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE
ENSG00000026025	VIM	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	TRUE
ENSG00000029363	BCLAF1	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE

Showing 1 to 20 of 886 entries

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Gene set over-representation analysis of RBPs interacting with SARS-CoV-2 RNA virus

Functional Database

References:

1. Flynn R A, Belk J A, Qi Y, et al. Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions[J]. Cell, 2021, 184(9): 2394-2411. e16.
2. Schmidt N, Lareau C A, Keshishian H, et al. The SARS-CoV-2 RNA–protein interactome in infected human cells[J]. Nature microbiology, 2021, 6(3): 339-353.
3. Iselin L, Palmalux N, Kamel W, et al. Uncovering viral RNA–host cell interactions on a proteome-wide scale[J]. Trends in biochemical sciences, 2022, 47(1): 23-38.

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Human RBPs binding to SARS-CoV-2 RNA virus

Gene set over-representation analysis of RBPs interacting with SARS-CoV-2 RNA virus

References: