Functions and Diseases

RBP Type Canonical_RBPs
Diseases CancerCHIKVSARS-COV-OC43FlavivirusesHIVIAVRVSARS-COV-2SINVDengueZika
Drug N.A.
Main interacting RNAs mRNA
Moonlighting functions N.A.
Localizations Stress granucleP-body
BulkPerturb-seq DataSet_01_407 DataSet_01_427

Description

Ensembl ID ENSG00000005007 Gene ID 5976 Accession 9962
Symbol UPF1 Alias UTF;HUPF1;NORF1;RENT1;smg-2;pNORF1 Full Name UPF1 RNA helicase and ATPase
Status Confidence Length 36272 bases Strand Plus strand
Position 19 : 18831959 - 18868230 RNA binding domain ResIII , UPF1_1B_dom , UPF1_Zn_bind
Summary This gene encodes a protein that is part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein is located only in the cytoplasm. When translation ends, it interacts with the protein that is a functional homolog of yeast Upf2p to trigger mRNA decapping. Use of multiple polyadenylation sites has been noted for this gene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000262803 ResIII PF04851 0.0001 1
ENSP00000262803 UPF1_Zn_bind PF09416 9.4e-77 2
ENSP00000262803 UPF1_1B_dom PF18141 5.1e-32 3
ENSP00000470142 ResIII PF04851 0.0001 1
ENSP00000470142 UPF1_Zn_bind PF09416 9.5e-77 2
ENSP00000470142 UPF1_1B_dom PF18141 1.6e-28 3
ENSP00000515988 ResIII PF04851 0.00017 1
ENSP00000515988 UPF1_Zn_bind PF09416 9.3e-77 2
ENSP00000515988 UPF1_1B_dom PF18141 5.1e-32 3
ENSP00000515989 UPF1_Zn_bind PF09416 3.6e-77 1
ENSP00000515989 UPF1_1B_dom PF18141 4.1e-22 2
ENSP00000515990 UPF1_Zn_bind PF09416 8.8e-77 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
10999600 Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay. A Bhattacharya 2000-09-01 RNA (New York, N.Y.)
26773057 Mechanism and regulation of the nonsense-mediated decay pathway. Nele Hug 2016-02-29 Nucleic acids research
31699982 Insights into the assembly and architecture of a Staufen-mediated mRNA decay (SMD)-competent mRNP. Manjeera Gowravaram 2019-11-07 Nature communications
36603024 Nuclear accumulation of host transcripts during Zika Virus Infection. E Kristoffer Leon 2023-01-01 PLoS pathogens
32017897 Structure-Mediated RNA Decay by UPF1 and G3BP1. W Joseph Fischer 2020-04-02 Molecular cell
16186820 CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells. Nao Hosoda 2005-10-01 Nature structural & molecular biology
26656492 A novel role for CARM1 in promoting nonsense-mediated mRNA decay: potential implications for spinal muscular atrophy. Gabriel Sanchez 2016-04-07 Nucleic acids research
18447580 Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region. B Andrea Eberle 2008-04-29 PLoS biology
29236296 RNA Decay Factor UPF1 Promotes Protein Decay: A Hidden Talent. Terra-Dawn TD M 2018-01-01 BioEssays : news and reviews in molecular, cellular and developmental biology
29504902 TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association. Seo-Won Choi 2018-02-19 BMC bioinformatics
26744779 Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway. Zhiyun Ge 2016-01-08 eLife
28827400 UPF1 helicase promotes TSN-mediated miRNA decay. A Reyad Elbarbary 2017-07-15 Genes & development
26138914 Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities. Francesca Fiorini 2015-07-03 Nature communications
28821679 UPF1 Governs Synaptic Plasticity through Association with a STAU2 RNA Granule. E Tyson Graber 2017-09-20 The Journal of neuroscience : the official journal of the Society for Neuroscience
32635561 UPF1-Mediated RNA Decay-Danse Macabre in a Cloud. Daria Lavysh 2020-07-04 Biomolecules
35729321 Blood-derived lncRNAs as biomarkers for cancer diagnosis: the Good, the Bad and the Beauty. Cedric Badowski 2022-06-21 NPJ precision oncology
32326562 The Complex Relationship between HTLV-1 and Nonsense-Mediated mRNA Decay (NMD). Léa Prochasson 2020-04-15 Pathogens (Basel, Switzerland)
25053839 A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMD. Pamela Nicholson 2014-08-01 Nucleic acids research
34019569 Characterisation of the Semliki Forest Virus-host cell interactome reveals the viral capsid protein as an inhibitor of nonsense-mediated mRNA decay. Lara Contu 2021-05-01 PLoS pathogens
31570513 HELZ directly interacts with CCR4-NOT and causes decay of bound mRNAs. Aoife Hanet 2019-10-01 Life science alliance
35675814 AKT constitutes a signal-promoted alternative exon-junction complex that regulates nonsense-mediated mRNA decay. Hana Cho 2022-08-04 Molecular cell
35508167 Walking a tightrope: The complex balancing act of R-loops in genome stability. R Joshua Brickner 2022-06-16 Molecular cell
30655309 UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond. Ki Yoon Kim 2019-04-01 RNA (New York, N.Y.)
30916337 Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay. Dmitri Pervouchine 2019-06-04 Nucleic acids research
27927164 The role of nucleotide composition in premature termination codon recognition. Fouad Zahdeh 2016-12-07 BMC bioinformatics
30218034 UPF1-like helicase grip on nucleic acids dictates processivity. Joanne Kanaan 2018-09-14 Nature communications
31131562 Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome. Aparna Kishor 2019-11-01 Wiley interdisciplinary reviews. RNA
29284541 DotAligner: identification and clustering of RNA structure motifs. A Martin Smith 2017-12-28 Genome biology

Transcripts

Name Transcript ID bp Protein Translation ID
UPF1-201 ENST00000262803 5321 1118aa ENSP00000262803
UPF1-214 ENST00000704676 5306 1113aa ENSP00000515988
UPF1-215 ENST00000704677 5328 391aa ENSP00000515989
UPF1-216 ENST00000704678 2055 346aa ENSP00000515990
UPF1-207 ENST00000599848 5311 1129aa ENSP00000470142
UPF1-213 ENST00000601981 4990 No protein -
UPF1-203 ENST00000594504 3270 No protein -
UPF1-208 ENST00000600012 501 No protein -
UPF1-211 ENST00000600868 580 No protein -
UPF1-205 ENST00000598209 551 No protein -
UPF1-209 ENST00000600310 750 No protein -
UPF1-217 ENST00000704679 4634 No protein -
UPF1-206 ENST00000598471 582 No protein -
UPF1-212 ENST00000601689 561 No protein -
UPF1-202 ENST00000594243 683 No protein -
UPF1-204 ENST00000596842 3825 No protein -
UPF1-210 ENST00000600689 3084 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000005007homo_sapiensENSP0000015647118.58599.62963homo_sapiensENSP0000026280324.686912.7907
ENSG00000005007homo_sapiensENSP0000022414013.29857.73254homo_sapiensENSP0000026280331.842618.5152
ENSG00000005007homo_sapiensENSP000002762419.46974.16667homo_sapiensENSP000002628032.236140.9839
ENSG00000005007homo_sapiensENSP0000025507826.988917.1198homo_sapiensENSP0000026280323.971415.2057
ENSG00000005007homo_sapiensENSP0000041740115.96839.58852homo_sapiensENSP0000026280337.835422.7191
ENSG00000005007homo_sapiensENSP0000035118527.452814.5283homo_sapiensENSP0000026280326.028613.7746
ENSG00000005007homo_sapiensENSP0000037941215.58928.55057homo_sapiensENSP0000026280326.744214.6691
ENSG00000005007homo_sapiensENSP0000035152415.1398.59938homo_sapiensENSP0000026280326.29714.9374
ENSG00000005007homo_sapiensENSP0000026279422.543413.9554homo_sapiensENSP0000026280324.418615.1163
ENSG00000005007homo_sapiensENSP0000035865924.426715.5533homo_sapiensENSP0000026280321.914113.9535

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000005007homo_sapiensENSP0000026280387.74687.6565nomascus_leucogenysENSNLEP0000004159198.49498.3936
ENSG00000005007homo_sapiensENSP0000026280394.454494.3649pan_paniscusENSPPAP0000004267296.350496.2591
ENSG00000005007homo_sapiensENSP00000262803100100pongo_abeliiENSPPYP0000001092399.025799.0257
ENSG00000005007homo_sapiensENSP00000262803100100pan_troglodytesENSPTRP0000006901199.025799.0257
ENSG00000005007homo_sapiensENSP0000026280393.559993.5599gorilla_gorillaENSGGOP0000000257299.24199.241
ENSG00000005007homo_sapiensENSP0000026280398.032297.3166ornithorhynchus_anatinusENSOANP0000000723898.472697.7538
ENSG00000005007homo_sapiensENSP0000026280394.007290.7871ornithorhynchus_anatinusENSOANP0000005183595.632492.3567
ENSG00000005007homo_sapiensENSP0000026280399.105598.7478sarcophilus_harrisiiENSSHAP0000003250199.105598.7478
ENSG00000005007homo_sapiensENSP0000026280370.125269.4097notamacropus_eugeniiENSMEUP0000001291870.250969.534
ENSG00000005007homo_sapiensENSP00000262803100100callithrix_jacchusENSCJAP0000003649499.025799.0257
ENSG00000005007homo_sapiensENSP0000026280394.007293.8283cercocebus_atysENSCATP0000003482697.949797.7633
ENSG00000005007homo_sapiensENSP0000026280331.305931.2165macaca_fascicularisENSMFAP0000003722196.418796.1432
ENSG00000005007homo_sapiensENSP0000026280333.005433.0054macaca_fascicularisENSMFAP0000003723599.193699.1936
ENSG00000005007homo_sapiensENSP00000262803100100macaca_mulattaENSMMUP0000004378899.025799.0257
ENSG00000005007homo_sapiensENSP00000262803100100macaca_nemestrinaENSMNEP0000000004799.025799.0257
ENSG00000005007homo_sapiensENSP00000262803100100papio_anubisENSPANP0000003299799.025799.0257
ENSG00000005007homo_sapiensENSP0000026280393.112793.1127mandrillus_leucophaeusENSMLEP0000000847598.954498.9544
ENSG00000005007homo_sapiensENSP0000026280395.617295.5277tursiops_truncatusENSTTRP0000001094896.133196.0432
ENSG00000005007homo_sapiensENSP0000026280399.910699.7317vulpes_vulpesENSVVUP0000001055399.821399.6425
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794mus_spretusMGP_SPRETEiJ_P008826798.576597.9537
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844equus_asinusENSEASP0000500914598.66998.4916
ENSG00000005007homo_sapiensENSP0000026280399.016198.8372capra_hircusENSCHIP0000000763298.312698.135
ENSG00000005007homo_sapiensENSP0000026280398.032297.585loxodonta_africanaENSLAFP0000002330597.077196.6342
ENSG00000005007homo_sapiensENSP0000026280399.910699.6422panthera_leoENSPLOP0000000073698.849698.5841
ENSG00000005007homo_sapiensENSP0000026280399.821199.6422ailuropoda_melanoleucaENSAMEP0000001208898.848598.6714
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844bos_indicus_hybridENSBIXP0000500758098.66998.4916
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844equus_caballusENSECAP0000005727698.66998.4916
ENSG00000005007homo_sapiensENSP0000026280399.910699.6422canis_lupus_familiarisENSCAFP0084502742198.849698.5841
ENSG00000005007homo_sapiensENSP0000026280399.910699.6422panthera_pardusENSPPRP0000000236898.849698.5841
ENSG00000005007homo_sapiensENSP0000026280388.282686.4937marmota_marmota_marmotaENSMMMP0000000282691.899490.0372
ENSG00000005007homo_sapiensENSP0000026280399.373999.2844balaenoptera_musculusENSBMSP0001000559598.580398.4916
ENSG00000005007homo_sapiensENSP0000026280397.316697.0483cavia_porcellusENSCPOP0000001566898.106497.8359
ENSG00000005007homo_sapiensENSP0000026280396.064494.9911felis_catusENSFCAP0000005873292.426891.3941
ENSG00000005007homo_sapiensENSP0000026280399.821199.6422ursus_americanusENSUAMP0000000840099.731999.5532
ENSG00000005007homo_sapiensENSP0000026280392.665592.2182monodelphis_domesticaENSMODP0000004029198.385697.9107
ENSG00000005007homo_sapiensENSP0000026280393.112792.9338bison_bison_bisonENSBBBP0000002186592.123991.9469
ENSG00000005007homo_sapiensENSP0000026280399.373999.2844monodon_monocerosENSMMNP0001500957498.580398.4916
ENSG00000005007homo_sapiensENSP0000026280399.373999.195sus_scrofaENSSSCP0000003653598.580398.4028
ENSG00000005007homo_sapiensENSP0000026280397.495597.1377microcebus_murinusENSMICP0000000151397.408497.0509
ENSG00000005007homo_sapiensENSP0000026280397.942897.8533octodon_degusENSODEP0000001685898.648798.5586
ENSG00000005007homo_sapiensENSP0000026280398.926798.3005jaculus_jaculusENSJJAP0000002336098.57497.9501
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844ovis_aries_rambouilletENSOARP0002000435898.66998.4916
ENSG00000005007homo_sapiensENSP0000026280394.722793.6494ursus_maritimusENSUMAP0000000963796.712395.6164
ENSG00000005007homo_sapiensENSP0000026280386.13685.2415ochotona_princepsENSOPRP0000001281693.223692.2556
ENSG00000005007homo_sapiensENSP0000026280399.373999.2844delphinapterus_leucasENSDLEP0000000836598.580398.4916
ENSG00000005007homo_sapiensENSP0000026280399.373999.2844physeter_catodonENSPCTP0000502795998.580398.4916
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794mus_caroliMGP_CAROLIEiJ_P008476598.576597.9537
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794mus_musculusENSMUSP0000007508998.576597.9537
ENSG00000005007homo_sapiensENSP0000026280393.112791.2343dipodomys_ordiiENSDORP0000002778294.12392.2242
ENSG00000005007homo_sapiensENSP0000026280399.910699.7317mustela_putorius_furoENSMPUP0000001540499.821399.6425
ENSG00000005007homo_sapiensENSP0000026280393.649493.2916aotus_nancymaaeENSANAP0000001237795.879195.5128
ENSG00000005007homo_sapiensENSP0000026280394.633394.3649saimiri_boliviensis_boliviensisENSSBOP0000001384696.886496.6117
ENSG00000005007homo_sapiensENSP0000026280399.910699.9106chlorocebus_sabaeusENSCSAP0000000159099.910699.9106
ENSG00000005007homo_sapiensENSP0000026280394.543893.4705mesocricetus_auratusENSMAUP0000001060795.397194.3141
ENSG00000005007homo_sapiensENSP0000026280399.373999.2844phocoena_sinusENSPSNP0000000293298.580398.4916
ENSG00000005007homo_sapiensENSP0000026280399.373999.195camelus_dromedariusENSCDRP0000501263098.580398.4028
ENSG00000005007homo_sapiensENSP0000026280392.933892.7549carlito_syrichtaENSTSYP0000001711992.028391.8512
ENSG00000005007homo_sapiensENSP0000026280391.144990.8766panthera_tigris_altaicaENSPTIP0000000897499.706599.4129
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794rattus_norvegicusENSRNOP0000007590598.576597.9537
ENSG00000005007homo_sapiensENSP0000026280310099.8211prolemur_simusENSPSMP0000000149799.025798.8485
ENSG00000005007homo_sapiensENSP0000026280399.016198.39microtus_ochrogasterENSMOCP0000000612398.487597.8648
ENSG00000005007homo_sapiensENSP0000026280392.844492.2182peromyscus_maniculatus_bairdiiENSPEMP0000000137992.348891.726
ENSG00000005007homo_sapiensENSP0000026280391.949991.771bos_mutusENSBMUP0000002013490.973490.7965
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794mus_spicilegusENSMSIP0000003847698.576597.9537
ENSG00000005007homo_sapiensENSP0000026280399.19598.5689cricetulus_griseus_chok1gshdENSCGRP0000102257399.640699.0117
ENSG00000005007homo_sapiensENSP0000026280368.157468.068pteropus_vampyrusENSPVAP0000000300468.096568.0071
ENSG00000005007homo_sapiensENSP0000026280399.284498.9267myotis_lucifugusENSMLUP0000001105599.284498.9267
ENSG00000005007homo_sapiensENSP0000026280399.105598.6583vombatus_ursinusENSVURP0001001990598.139997.6971
ENSG00000005007homo_sapiensENSP0000026280397.495596.3327rhinolophus_ferrumequinumENSRFEP0001003151893.242192.13
ENSG00000005007homo_sapiensENSP0000026280399.910699.7317neovison_visonENSNVIP0000002571299.821399.6425
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844bos_taurusENSBTAP0000002786898.66998.4916
ENSG00000005007homo_sapiensENSP0000026280396.869496.3327heterocephalus_glaber_femaleENSHGLP0000001524094.585294.0611
ENSG00000005007homo_sapiensENSP0000026280391.949991.5027rhinopithecus_bietiENSRBIP0000000302496.254795.7865
ENSG00000005007homo_sapiensENSP0000026280399.910699.7317canis_lupus_dingoENSCAFP0002001536299.821399.6425
ENSG00000005007homo_sapiensENSP0000026280399.731799.4633sciurus_vulgarisENSSVLP0000502059398.7698.4942
ENSG00000005007homo_sapiensENSP0000026280392.57692.1288phascolarctos_cinereusENSPCIP0000000725898.477698.0019
ENSG00000005007homo_sapiensENSP0000026280370.304170.1252procavia_capensisENSPCAP0000001215870.493370.3139
ENSG00000005007homo_sapiensENSP0000026280399.19598.6583nannospalax_galiliENSNGAP0000002647298.402897.8705
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844bos_grunniensENSBGRP0000000152098.66998.4916
ENSG00000005007homo_sapiensENSP0000026280395.259494.6333chinchilla_lanigeraENSCLAP0000000569294.582693.9609
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844cervus_hanglu_yarkandensisENSCHYP0000002350098.66998.4916
ENSG00000005007homo_sapiensENSP0000026280399.463399.2844catagonus_wagneriENSCWAP0000002566998.66998.4916
ENSG00000005007homo_sapiensENSP0000026280399.821199.6422ictidomys_tridecemlineatusENSSTOP0000003021796.87596.7014
ENSG00000005007homo_sapiensENSP0000026280310099.9106otolemur_garnettiiENSOGAP0000001153410099.9106
ENSG00000005007homo_sapiensENSP0000026280398.032297.4955cebus_imitatorENSCCAP0000002852895.221594.7003
ENSG00000005007homo_sapiensENSP0000026280399.821199.7317urocitellus_parryiiENSUPAP0001002310699.821199.7317
ENSG00000005007homo_sapiensENSP0000026280399.463399.195moschus_moschiferusENSMMSP0000003011498.66998.4028
ENSG00000005007homo_sapiensENSP0000026280394.454494.2755rhinopithecus_roxellanaENSRROP0000003479897.868497.683
ENSG00000005007homo_sapiensENSP0000026280399.105598.4794mus_pahariMGP_PahariEiJ_P004764698.576597.9537
ENSG00000005007homo_sapiensENSP0000026280399.642299.4633propithecus_coquereliENSPCOP0000002336098.671498.4942
ENSG00000005007homo_sapiensENSP0000026280364.311348.4794caenorhabditis_elegansY48G8AL.6.167.259150.7016
ENSG00000005007homo_sapiensENSP0000026280377.10266.1896drosophila_melanogasterFBpp007343373.050862.7119
ENSG00000005007homo_sapiensENSP0000026280367.084160.8229ciona_intestinalisENSCINP0000003194389.712981.3397
ENSG00000005007homo_sapiensENSP0000026280392.307787.3882petromyzon_marinusENSPMAP0000000133893.309288.3363
ENSG00000005007homo_sapiensENSP0000026280315.921315.2952eptatretus_burgeriENSEBUP000000127188985.5
ENSG00000005007homo_sapiensENSP0000026280351.162848.0322eptatretus_burgeriENSEBUP0000001604991.813886.1958
ENSG00000005007homo_sapiensENSP0000026280391.77190.3399callorhinchus_miliiENSCMIP0000001222596.157494.6579
ENSG00000005007homo_sapiensENSP0000026280361.270160.644latimeria_chalumnaeENSLACP0000000961798.278397.274
ENSG00000005007homo_sapiensENSP0000026280396.332795.1699lepisosteus_oculatusENSLOCP0000000242697.909196.7273
ENSG00000005007homo_sapiensENSP0000026280395.348893.4705clupea_harengusENSCHAP0000002522995.949694.0594
ENSG00000005007homo_sapiensENSP0000026280394.991192.6655clupea_harengusENSCHAP0000004042395.417893.0818
ENSG00000005007homo_sapiensENSP0000026280395.617293.5599danio_rerioENSDARP0000015355097.181895.0909
ENSG00000005007homo_sapiensENSP0000026280395.617293.6494carassius_auratusENSCARP0000008519597.181895.1818
ENSG00000005007homo_sapiensENSP0000026280395.527793.2916carassius_auratusENSCARP0000002565896.564294.3038
ENSG00000005007homo_sapiensENSP0000026280395.259492.9338carassius_auratusENSCARP0000002200296.119193.7726
ENSG00000005007homo_sapiensENSP0000026280395.617293.6494carassius_auratusENSCARP0000000267797.181895.1818
ENSG00000005007homo_sapiensENSP0000026280395.706693.7388astyanax_mexicanusENSAMXP0000005121997.272795.2727
ENSG00000005007homo_sapiensENSP0000026280395.885594.0966ictalurus_punctatusENSIPUP0000000752897.454595.6364
ENSG00000005007homo_sapiensENSP0000026280394.007291.4132esox_luciusENSELUP0000004039693.173890.6028
ENSG00000005007homo_sapiensENSP0000026280394.812292.4866esox_luciusENSELUP0000003433095.495593.1532
ENSG00000005007homo_sapiensENSP0000026280394.633392.6655electrophorus_electricusENSEEEP0000000010596.444894.4394
ENSG00000005007homo_sapiensENSP0000026280389.803286.2254oncorhynchus_kisutchENSOKIP0000507882091.189887.5568
ENSG00000005007homo_sapiensENSP0000026280394.633392.3971oncorhynchus_kisutchENSOKIP0000503402194.71892.4799
ENSG00000005007homo_sapiensENSP0000026280393.738891.2343oncorhynchus_kisutchENSOKIP0000511702895.186292.6431
ENSG00000005007homo_sapiensENSP0000026280395.080592.9338oncorhynchus_kisutchENSOKIP0000507471594.82692.6851
ENSG00000005007homo_sapiensENSP0000026280395.169993.0233oncorhynchus_mykissENSOMYP0000000157096.115693.9476
ENSG00000005007homo_sapiensENSP0000026280394.007291.3238oncorhynchus_mykissENSOMYP0000000400993.755691.0794
ENSG00000005007homo_sapiensENSP0000026280394.633392.3077oncorhynchus_mykissENSOMYP0000006852995.573693.2249
ENSG00000005007homo_sapiensENSP0000026280392.128889.4454oncorhynchus_mykissENSOMYP0000011780792.876590.1713
ENSG00000005007homo_sapiensENSP0000026280394.991192.7549salmo_salarENSSSAP0000014447695.93593.6766
ENSG00000005007homo_sapiensENSP0000026280394.543892.4866salmo_salarENSSSAP0000009575595.569693.4901
ENSG00000005007homo_sapiensENSP0000026280393.828391.3238salmo_salarENSSSAP0000010948995.27792.7339
ENSG00000005007homo_sapiensENSP0000026280394.007291.0555salmo_salarENSSSAP0000009822894.514491.5468
ENSG00000005007homo_sapiensENSP0000026280393.738891.2343salmo_truttaENSSTUP0000010524695.186292.6431
ENSG00000005007homo_sapiensENSP0000026280394.633392.576salmo_truttaENSSTUP0000001557294.548792.4933
ENSG00000005007homo_sapiensENSP0000026280394.991192.8444salmo_truttaENSSTUP0000001624795.076192.9275
ENSG00000005007homo_sapiensENSP0000026280393.828390.966salmo_truttaENSSTUP0000010169594.334591.4568
ENSG00000005007homo_sapiensENSP0000026280393.828391.2343gadus_morhuaENSGMOP0000000808195.624492.9809
ENSG00000005007homo_sapiensENSP0000026280384.168281.3059fundulus_heteroclitusENSFHEP0000003073194.954691.7255
ENSG00000005007homo_sapiensENSP0000026280392.933889.2665fundulus_heteroclitusENSFHEP0000000538393.603689.9099
ENSG00000005007homo_sapiensENSP0000026280393.559990.6977poecilia_reticulataENSPREP0000001474994.319291.4337
ENSG00000005007homo_sapiensENSP0000026280394.18692.2182poecilia_reticulataENSPREP0000001665695.989193.9836
ENSG00000005007homo_sapiensENSP0000026280394.096692.2182xiphophorus_maculatusENSXMAP0000000255295.810693.898
ENSG00000005007homo_sapiensENSP0000026280390.697787.5671xiphophorus_maculatusENSXMAP0000000170793.542490.3137
ENSG00000005007homo_sapiensENSP0000026280394.633392.576oryzias_latipesENSORLP0000001062296.094594.0054
ENSG00000005007homo_sapiensENSP0000026280394.722792.4866cyclopterus_lumpusENSCLMP0000500110594.38592.1569
ENSG00000005007homo_sapiensENSP0000026280393.112790.7871cyclopterus_lumpusENSCLMP0000501872393.615191.277
ENSG00000005007homo_sapiensENSP0000026280394.275592.3077oreochromis_niloticusENSONIP0000005899894.275592.3077
ENSG00000005007homo_sapiensENSP0000026280394.096692.2182oreochromis_niloticusENSONIP0000001313794.860292.9666
ENSG00000005007homo_sapiensENSP0000026280374.686972.898haplochromis_burtoniENSHBUP0000001288392.469590.2547
ENSG00000005007homo_sapiensENSP0000026280384.257682.1109haplochromis_burtoniENSHBUP0000000739593.824791.4343
ENSG00000005007homo_sapiensENSP0000026280394.454492.4866astatotilapia_callipteraENSACLP0000003345295.912893.9146
ENSG00000005007homo_sapiensENSP0000026280393.38191.4132astatotilapia_callipteraENSACLP0000001054195.255593.2482
ENSG00000005007homo_sapiensENSP0000026280394.18692.0394sparus_aurataENSSAUP0001001491894.609292.4528
ENSG00000005007homo_sapiensENSP0000026280394.633392.6655sparus_aurataENSSAUP0001002215895.6693.6709
ENSG00000005007homo_sapiensENSP0000026280394.454492.3077lates_calcariferENSLCAP0001004641194.708592.5561
ENSG00000005007homo_sapiensENSP0000026280396.064495.3488xenopus_tropicalisENSXETP0000006369997.194696.4706
ENSG00000005007homo_sapiensENSP0000026280398.032297.2272chrysemys_picta_belliiENSCPBP0000001703398.472697.664
ENSG00000005007homo_sapiensENSP0000026280397.853397.0483sphenodon_punctatusENSSPUP0000001367898.647497.8359
ENSG00000005007homo_sapiensENSP0000026280398.3997.6744crocodylus_porosusENSCPRP0000502254498.478197.7619
ENSG00000005007homo_sapiensENSP0000026280382.379281.6637laticauda_laticaudataENSLLTP0000001768097.770796.9214
ENSG00000005007homo_sapiensENSP0000026280397.674497.2272notechis_scutatusENSNSUP0000000752596.042295.6025
ENSG00000005007homo_sapiensENSP0000026280398.211197.7639pseudonaja_textilisENSPTXP0000000313397.082296.6401
ENSG00000005007homo_sapiensENSP0000026280398.211197.4955anas_platyrhynchos_platyrhynchosENSAPLP0000000889698.29997.5828
ENSG00000005007homo_sapiensENSP0000026280398.3997.585gallus_gallusENSGALP0001004201498.214397.4107
ENSG00000005007homo_sapiensENSP0000026280393.291692.1288meleagris_gallopavoENSMGAP0000002180295.077593.8924
ENSG00000005007homo_sapiensENSP0000026280393.738892.9338serinus_canariaENSSCAP0000001608398.311497.4672
ENSG00000005007homo_sapiensENSP0000026280374.686971.6458parus_majorENSPMJP0000001788189.978486.3147
ENSG00000005007homo_sapiensENSP0000026280391.77189.7138neolamprologus_brichardiENSNBRP0000000083794.388292.2723
ENSG00000005007homo_sapiensENSP0000026280394.454492.4866neolamprologus_brichardiENSNBRP0000002900992.469490.5429
ENSG00000005007homo_sapiensENSP0000026280398.121697.585naja_najaENSNNAP0000000281596.993896.4633
ENSG00000005007homo_sapiensENSP0000026280398.211197.6744podarcis_muralisENSPMRP0000003366197.082296.5517
ENSG00000005007homo_sapiensENSP0000026280392.397191.771geospiza_fortisENSGFOP0000000628398.287397.6213
ENSG00000005007homo_sapiensENSP0000026280398.300597.585taeniopygia_guttataENSTGUP0000000108498.388597.6723
ENSG00000005007homo_sapiensENSP0000026280395.97595.1699erpetoichthys_calabaricusENSECRP0000001805997.545596.7273
ENSG00000005007homo_sapiensENSP0000026280394.812292.8444kryptolebias_marmoratusENSKMAP0000000660296.276194.2779
ENSG00000005007homo_sapiensENSP0000026280397.406196.9589salvator_merianaeENSSMRP0000002987182.562582.1835
ENSG00000005007homo_sapiensENSP0000026280394.454492.6655oryzias_javanicusENSOJAP0000002274095.912894.0963
ENSG00000005007homo_sapiensENSP0000026280388.729987.1199amphilophus_citrinellusENSACIP0000001415796.87595.1172
ENSG00000005007homo_sapiensENSP0000026280393.559991.6816amphilophus_citrinellusENSACIP0000002578395.43893.5219
ENSG00000005007homo_sapiensENSP0000026280394.722792.6655dicentrarchus_labraxENSDLAP0000504642094.553692.5
ENSG00000005007homo_sapiensENSP0000026280393.828391.771dicentrarchus_labraxENSDLAP0000501264693.410591.3624
ENSG00000005007homo_sapiensENSP0000026280394.812292.8444amphiprion_perculaENSAPEP0000000878396.276194.2779
ENSG00000005007homo_sapiensENSP0000026280394.543892.4866amphiprion_perculaENSAPEP0000002304894.968692.9021
ENSG00000005007homo_sapiensENSP0000026280394.633392.4866oryzias_sinensisENSOSIP0000004214694.295992.1569
ENSG00000005007homo_sapiensENSP0000026280367.26366.9946pelodiscus_sinensisENSPSIP0000001046199.208498.8127
ENSG00000005007homo_sapiensENSP0000026280397.853397.1377gopherus_evgoodeiENSGEVP0000502747198.736598.0144
ENSG00000005007homo_sapiensENSP0000026280395.527794.3649chelonoidis_abingdoniiENSCABP0000002207297.534296.347
ENSG00000005007homo_sapiensENSP0000026280394.543892.3971seriola_dumeriliENSSDUP0000001828694.798292.6457
ENSG00000005007homo_sapiensENSP0000026280394.901692.9338seriola_dumeriliENSSDUP0000001328196.279594.2831
ENSG00000005007homo_sapiensENSP0000026280393.917791.5921cottoperca_gobioENSCGOP0000003348294.424592.0863
ENSG00000005007homo_sapiensENSP0000026280394.543892.576cottoperca_gobioENSCGOP0000003024894.628592.6589
ENSG00000005007homo_sapiensENSP0000026280393.649493.0233struthio_camelus_australisENSSCUP0000001383795.879195.2381
ENSG00000005007homo_sapiensENSP0000026280393.291692.6655anser_brachyrhynchusENSABRP0000000560998.489197.8281
ENSG00000005007homo_sapiensENSP0000026280393.202190.966gasterosteus_aculeatusENSGACP0000002045693.452991.2108
ENSG00000005007homo_sapiensENSP0000026280394.364992.3971gasterosteus_aculeatusENSGACP0000001075094.703892.7289
ENSG00000005007homo_sapiensENSP0000026280389.713886.8515cynoglossus_semilaevisENSCSEP0000002700693.302390.3256
ENSG00000005007homo_sapiensENSP0000026280394.364992.4866cynoglossus_semilaevisENSCSEP0000002532096.083894.1712
ENSG00000005007homo_sapiensENSP0000026280394.275592.3971poecilia_formosaENSPFOP0000000075896.080294.1659
ENSG00000005007homo_sapiensENSP0000026280393.202190.161poecilia_formosaENSPFOP0000000456094.128391.0569
ENSG00000005007homo_sapiensENSP0000026280395.080593.4705myripristis_murdjanENSMMDP0000502745696.46194.8276
ENSG00000005007homo_sapiensENSP0000026280394.364992.4866myripristis_murdjanENSMMDP0000503527694.53492.6523
ENSG00000005007homo_sapiensENSP0000026280394.454492.3077sander_luciopercaENSSLUP0000003127794.538992.3903
ENSG00000005007homo_sapiensENSP0000026280394.275591.9499sander_luciopercaENSSLUP0000000893794.61492.2801
ENSG00000005007homo_sapiensENSP0000026280398.300597.585strigops_habroptilaENSSHBP0000502037097.775897.0641
ENSG00000005007homo_sapiensENSP0000026280394.543892.4866amphiprion_ocellarisENSAOCP0000001385694.968692.9021
ENSG00000005007homo_sapiensENSP0000026280394.812292.8444amphiprion_ocellarisENSAOCP0000002151696.276194.2779
ENSG00000005007homo_sapiensENSP0000026280398.3997.6744terrapene_carolina_triunguisENSTMTP0000001727398.654797.9372
ENSG00000005007homo_sapiensENSP0000026280394.812292.8444hucho_huchoENSHHUP0000004794694.982193.0107
ENSG00000005007homo_sapiensENSP0000026280394.18691.5027hucho_huchoENSHHUP0000006423794.694291.9964
ENSG00000005007homo_sapiensENSP0000026280394.722792.4866hucho_huchoENSHHUP0000002434995.66493.4056
ENSG00000005007homo_sapiensENSP0000026280392.128889.6243hucho_huchoENSHHUP0000002290694.149991.5905
ENSG00000005007homo_sapiensENSP0000026280394.18691.8605betta_splendensENSBSLP0000000098393.93491.6146
ENSG00000005007homo_sapiensENSP0000026280393.917791.771betta_splendensENSBSLP0000005631094.509592.3492
ENSG00000005007homo_sapiensENSP0000026280395.706693.7388pygocentrus_nattereriENSPNAP0000001904197.272795.2727
ENSG00000005007homo_sapiensENSP0000026280394.901692.8444anabas_testudineusENSATEP0000006220495.071793.0107
ENSG00000005007homo_sapiensENSP0000026280394.364992.2182anabas_testudineusENSATEP0000002581694.618892.4664
ENSG00000005007homo_sapiensENSP0000026280382.915973.0769ciona_savignyiENSCSAVP0000001117884.812474.7484
ENSG00000005007homo_sapiensENSP0000026280360.375745.2594saccharomyces_cerevisiaeYMR080C69.51652.1112
ENSG00000005007homo_sapiensENSP0000026280394.901692.9338seriola_lalandi_dorsalisENSSLDP0000000870896.279594.2831
ENSG00000005007homo_sapiensENSP0000026280394.007291.8605seriola_lalandi_dorsalisENSSLDP0000002687595.113192.9412
ENSG00000005007homo_sapiensENSP0000026280394.096691.6816labrus_bergyltaENSLBEP0000001939594.519392.0934
ENSG00000005007homo_sapiensENSP0000026280394.722792.576labrus_bergyltaENSLBEP0000003735296.09893.9201
ENSG00000005007homo_sapiensENSP0000026280394.454492.4866pundamilia_nyerereiENSPNYP0000002218395.912893.9146
ENSG00000005007homo_sapiensENSP0000026280394.007291.9499pundamilia_nyerereiENSPNYP0000000483394.770192.6961
ENSG00000005007homo_sapiensENSP0000026280394.454492.1288mastacembelus_armatusENSMAMP0000000927294.708592.3767
ENSG00000005007homo_sapiensENSP0000026280394.275592.3077mastacembelus_armatusENSMAMP0000005382793.772291.8149
ENSG00000005007homo_sapiensENSP0000026280391.502789.356stegastes_partitusENSSPAP0000000000395.074392.8439
ENSG00000005007homo_sapiensENSP0000026280394.722792.8444stegastes_partitusENSSPAP0000001532696.272794.3636
ENSG00000005007homo_sapiensENSP0000026280394.096691.4132oncorhynchus_tshawytschaENSOTSP0000506857594.434591.7415
ENSG00000005007homo_sapiensENSP0000026280393.738891.2343oncorhynchus_tshawytschaENSOTSP0000505665795.186292.6431
ENSG00000005007homo_sapiensENSP0000026280395.169993.0233oncorhynchus_tshawytschaENSOTSP0000506667396.115693.9476
ENSG00000005007homo_sapiensENSP0000026280394.722792.4866oncorhynchus_tshawytschaENSOTSP0000505312294.807592.5694
ENSG00000005007homo_sapiensENSP0000026280394.722792.7549acanthochromis_polyacanthusENSAPOP0000000867496.185394.1871
ENSG00000005007homo_sapiensENSP0000026280394.543892.4866acanthochromis_polyacanthusENSAPOP0000002019694.968692.9021
ENSG00000005007homo_sapiensENSP0000026280398.3997.6744aquila_chrysaetos_chrysaetosENSACCP0002000873398.478197.7619
ENSG00000005007homo_sapiensENSP0000026280394.633392.6655nothobranchius_furzeriENSNFUP0001504554694.211992.2529
ENSG00000005007homo_sapiensENSP0000026280394.364992.4866cyprinodon_variegatusENSCVAP0000002558995.73593.8294
ENSG00000005007homo_sapiensENSP0000026280395.259493.9177denticeps_clupeoidesENSDCDP0000002513796.906395.5414
ENSG00000005007homo_sapiensENSP0000026280394.722792.9338larimichthys_croceaENSLCRP0000505479495.062893.2675
ENSG00000005007homo_sapiensENSP0000026280394.18692.1288larimichthys_croceaENSLCRP0000506461895.036192.9603
ENSG00000005007homo_sapiensENSP0000026280394.007291.3238takifugu_rubripesENSTRUP0000001229494.007291.3238
ENSG00000005007homo_sapiensENSP0000026280394.007291.3238takifugu_rubripesENSTRUP0000000030894.599591.8992
ENSG00000005007homo_sapiensENSP0000026280393.38192.6655ficedula_albicollisENSFALP0000002521296.84696.1039
ENSG00000005007homo_sapiensENSP0000026280394.543892.2182hippocampus_comesENSHCOP0000002176196.090993.7273
ENSG00000005007homo_sapiensENSP0000026280395.617293.4705cyprinus_carpio_carpioENSCCRP0000006517297.181895
ENSG00000005007homo_sapiensENSP0000026280395.527793.381cyprinus_carpio_carpioENSCCRP0000001350697.090994.9091
ENSG00000005007homo_sapiensENSP0000026280398.300597.585coturnix_japonicaENSCJPP0000501344998.388597.6723
ENSG00000005007homo_sapiensENSP0000026280394.275592.3971poecilia_latipinnaENSPLAP0000002752696.080294.1659
ENSG00000005007homo_sapiensENSP0000026280393.291690.2505poecilia_latipinnaENSPLAP0000001442794.218691.1472
ENSG00000005007homo_sapiensENSP0000026280379.695976.8336sinocyclocheilus_grahamiENSSGRP0000000731394.18690.8034
ENSG00000005007homo_sapiensENSP0000026280395.169993.0233sinocyclocheilus_grahamiENSSGRP0000008320095.340593.19
ENSG00000005007homo_sapiensENSP0000026280394.007291.9499maylandia_zebraENSMZEP0000500453794.770192.6961
ENSG00000005007homo_sapiensENSP0000026280394.454492.4866maylandia_zebraENSMZEP0000502187195.912893.9146
ENSG00000005007homo_sapiensENSP0000026280393.738891.1449tetraodon_nigroviridisENSTNIP0000001401193.072890.4973
ENSG00000005007homo_sapiensENSP0000026280392.754989.9821tetraodon_nigroviridisENSTNIP0000000289893.171690.3863
ENSG00000005007homo_sapiensENSP0000026280388.819387.3882paramormyrops_kingsleyaeENSPKIP0000002183095.572794.0327
ENSG00000005007homo_sapiensENSP0000026280395.97595.0805scleropages_formosusENSSFOP0001507278194.205493.3275
ENSG00000005007homo_sapiensENSP0000026280396.243395.5277leptobrachium_leishanenseENSLLEP0000002789897.818297.0909
ENSG00000005007homo_sapiensENSP0000026280391.144988.8193scophthalmus_maximusENSSMAP0000007045392.974490.6022
ENSG00000005007homo_sapiensENSP0000026280394.454492.4866scophthalmus_maximusENSSMAP0000005652393.866791.9111
ENSG00000005007homo_sapiensENSP0000026280394.543892.6655oryzias_melastigmaENSOMEP0000002351296.003694.0963

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000184involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay5IBA,IDA,IMP,NAS,TASHomo_sapiens(9606)Process
GO:0000781located_in chromosome, telomeric region1IDAHomo_sapiens(9606)Component
GO:0000785part_of chromatin1IDAHomo_sapiens(9606)Component
GO:0000932located_in P-body1IEAHomo_sapiens(9606)Component
GO:0000956involved_in nuclear-transcribed mRNA catabolic process1IMPHomo_sapiens(9606)Process
GO:0003682enables chromatin binding1IDAHomo_sapiens(9606)Function
GO:0003723enables RNA binding4HDA,IBA,IDA,NASHomo_sapiens(9606)Function
GO:0003724enables RNA helicase activity2IBA,IDAHomo_sapiens(9606)Function
GO:0004386enables helicase activity1NASHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005524enables ATP binding1IEAHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1IDAHomo_sapiens(9606)Component
GO:0005737is_active_in cytoplasm2IBA,NASHomo_sapiens(9606)Component
GO:0005829located_in cytosol2IDA,TASHomo_sapiens(9606)Component
GO:0006260involved_in DNA replication1IMPHomo_sapiens(9606)Process
GO:0006281involved_in DNA repair1IDAHomo_sapiens(9606)Process
GO:0006406involved_in mRNA export from nucleus1TASHomo_sapiens(9606)Process
GO:0006449involved_in regulation of translational termination2IMP,NASHomo_sapiens(9606)Process
GO:0008270enables zinc ion binding1IEAHomo_sapiens(9606)Function
GO:0016887enables ATP hydrolysis activity1IDAHomo_sapiens(9606)Function
GO:0032201involved_in telomere maintenance via semi-conservative replication1IDAHomo_sapiens(9606)Process
GO:0032204involved_in regulation of telomere maintenance1IMPHomo_sapiens(9606)Process
GO:0032508involved_in DNA duplex unwinding1IDAHomo_sapiens(9606)Process
GO:0035145part_of exon-exon junction complex1IDAHomo_sapiens(9606)Component
GO:0036121enables double-stranded DNA helicase activity1IDAHomo_sapiens(9606)Function
GO:0042162enables telomeric DNA binding1IDAHomo_sapiens(9606)Function
GO:0044530part_of supraspliceosomal complex1IDAHomo_sapiens(9606)Component
GO:0044770involved_in cell cycle phase transition1IMPHomo_sapiens(9606)Process
GO:0044877enables protein-containing complex binding1IPIHomo_sapiens(9606)Function
GO:0048471located_in perinuclear region of cytoplasm1IEAHomo_sapiens(9606)Component
GO:0061014involved_in positive regulation of mRNA catabolic process2IDA,IMPHomo_sapiens(9606)Process
GO:0061158involved_in 3-UTR-mediated mRNA destabilization2IDA,TASHomo_sapiens(9606)Process
GO:0071044involved_in histone mRNA catabolic process1IMPHomo_sapiens(9606)Process
GO:0071222involved_in cellular response to lipopolysaccharide1TASHomo_sapiens(9606)Process
GO:0071347involved_in cellular response to interleukin-11TASHomo_sapiens(9606)Process

Expression