RBP Type
Non-canonical_RBPs
Diseases
CancerSARS-COV-2
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
N.A.
Localizations
N.A.
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000187837 Gene ID
3006
Accession
4716
Symbol
H1-2
Alias
H1C;H1.2;H1F2;H1s-1;HIST1H1C
Full Name
H1.2 linker histone, cluster member
Status
Confidence
Length
731 bases
Strand
Minus strand
Position
6 : 26055740 - 26056470
RNA binding domain
N.A.
Summary
Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H1 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000187837 homo_sapiens ENSP00000344504 57.732 45.8763 homo_sapiens ENSP00000339566 52.5822 41.784 ENSG00000187837 homo_sapiens ENSP00000329662 46.4789 32.8638 homo_sapiens ENSP00000339566 46.4789 32.8638 ENSG00000187837 homo_sapiens ENSP00000341214 63.7681 52.1739 homo_sapiens ENSP00000339566 61.9718 50.7042 ENSG00000187837 homo_sapiens ENSP00000319799 30.9249 22.2543 homo_sapiens ENSP00000339566 50.2347 36.1502 ENSG00000187837 homo_sapiens ENSP00000334805 36.0784 20 homo_sapiens ENSP00000339566 43.1925 23.9437 ENSG00000187837 homo_sapiens ENSP00000244573 73.9535 67.4419 homo_sapiens ENSP00000339566 74.6479 68.0751 ENSG00000187837 homo_sapiens ENSP00000330074 78.7611 76.5487 homo_sapiens ENSP00000339566 83.5681 81.2207 ENSG00000187837 homo_sapiens ENSP00000307705 84.9315 84.9315 homo_sapiens ENSP00000339566 87.3239 87.3239 ENSG00000187837 homo_sapiens ENSP00000244534 81.448 80.0905 homo_sapiens ENSP00000339566 84.507 83.0986
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000187837 homo_sapiens ENSP00000339566 98.5916 98.5916 nomascus_leucogenys ENSNLEP00000022249 98.5916 98.5916 ENSG00000187837 homo_sapiens ENSP00000339566 99.5305 99.5305 pan_paniscus ENSPPAP00000003375 99.5305 99.5305 ENSG00000187837 homo_sapiens ENSP00000339566 99.5305 99.5305 pongo_abelii ENSPPYP00000018233 99.5305 99.5305 ENSG00000187837 homo_sapiens ENSP00000339566 99.5305 99.5305 pan_troglodytes ENSPTRP00000030392 99.5305 99.5305 ENSG00000187837 homo_sapiens ENSP00000339566 100 100 gorilla_gorilla ENSGGOP00000007505 100 100 ENSG00000187837 homo_sapiens ENSP00000339566 84.0376 80.2817 ornithorhynchus_anatinus ENSOANP00000034053 78.5088 75 ENSG00000187837 homo_sapiens ENSP00000339566 51.6432 48.3568 notamacropus_eugenii ENSMEUP00000000814 88.7097 83.0645 ENSG00000187837 homo_sapiens ENSP00000339566 89.6714 89.2019 dasypus_novemcinctus ENSDNOP00000026389 91.3876 90.9091 ENSG00000187837 homo_sapiens ENSP00000339566 91.0798 89.6714 erinaceus_europaeus ENSEEUP00000002492 91.5094 90.0943 ENSG00000187837 homo_sapiens ENSP00000339566 94.8357 93.8967 callithrix_jacchus ENSCJAP00000057041 94.8357 93.8967 ENSG00000187837 homo_sapiens ENSP00000339566 95.7747 94.3662 macaca_fascicularis ENSMFAP00000063868 95.7747 94.3662 ENSG00000187837 homo_sapiens ENSP00000339566 88.7324 87.7934 macaca_mulatta ENSMMUP00000065077 96.9231 95.8974 ENSG00000187837 homo_sapiens ENSP00000339566 96.2441 94.3662 papio_anubis ENSPANP00000049195 96.2441 94.3662 ENSG00000187837 homo_sapiens ENSP00000339566 76.9953 71.3615 vulpes_vulpes ENSVVUP00000035148 78.0952 72.381 ENSG00000187837 homo_sapiens ENSP00000339566 74.6479 70.892 vulpes_vulpes ENSVVUP00000001140 74.6479 70.892 ENSG00000187837 homo_sapiens ENSP00000339566 87.7934 87.3239 vulpes_vulpes ENSVVUP00000035069 86.9767 86.5116 ENSG00000187837 homo_sapiens ENSP00000339566 89.6714 88.2629 mus_spretus MGP_SPRETEiJ_P0035458 90.0943 88.6792 ENSG00000187837 homo_sapiens ENSP00000339566 84.9765 84.9765 equus_asinus ENSEASP00005042030 92.3469 92.3469 ENSG00000187837 homo_sapiens ENSP00000339566 91.0798 90.1408 capra_hircus ENSCHIP00000024891 85.4626 84.5815 ENSG00000187837 homo_sapiens ENSP00000339566 78.4038 77.9343 loxodonta_africana ENSLAFP00000022030 91.2568 90.7104 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 90.6103 panthera_leo ENSPLOP00000017775 90.6103 90.6103 ENSG00000187837 homo_sapiens ENSP00000339566 86.8545 86.385 ailuropoda_melanoleuca ENSAMEP00000016813 84.0909 83.6364 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 91.0798 bos_indicus_hybrid ENSBIXP00005031323 86.3436 85.4626 ENSG00000187837 homo_sapiens ENSP00000339566 85.446 80.7512 oryctolagus_cuniculus ENSOCUP00000019095 49.0566 46.3612 ENSG00000187837 homo_sapiens ENSP00000339566 85.446 85.446 equus_caballus ENSECAP00000061340 92.8571 92.8571 ENSG00000187837 homo_sapiens ENSP00000339566 92.9577 92.0188 canis_lupus_familiaris ENSCAFP00845035339 92.9577 92.0188 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 90.6103 panthera_pardus ENSPPRP00000025183 90.6103 90.6103 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.1408 marmota_marmota_marmota ENSMMMP00000001987 91.9811 90.566 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 87.3239 balaenoptera_musculus ENSBMSP00010014372 90.6103 87.3239 ENSG00000187837 homo_sapiens ENSP00000339566 92.4883 91.5493 cavia_porcellus ENSCPOP00000020422 92.4883 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 89.2019 87.3239 felis_catus ENSFCAP00000003509 57.4018 56.1934 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.6103 bison_bison_bison ENSBBBP00000028603 77.381 76.5873 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 89.6714 monodon_monoceros ENSMMNP00015016300 92.0188 89.6714 ENSG00000187837 homo_sapiens ENSP00000339566 89.6714 87.7934 jaculus_jaculus ENSJJAP00000009017 90.5213 88.6256 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 91.0798 ovis_aries_rambouillet ENSOARP00020008981 92.0188 91.0798 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 90.1408 ursus_maritimus ENSUMAP00000028751 90.6103 90.1408 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 90.1408 ochotona_princeps ENSOPRP00000012878 90.6103 90.1408 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 89.6714 delphinapterus_leucas ENSDLEP00000026608 92.0188 89.6714 ENSG00000187837 homo_sapiens ENSP00000339566 92.4883 90.6103 physeter_catodon ENSPCTP00005014394 92.4883 90.6103 ENSG00000187837 homo_sapiens ENSP00000339566 89.2019 87.7934 mus_caroli MGP_CAROLIEiJ_P0033878 89.6226 88.2076 ENSG00000187837 homo_sapiens ENSP00000339566 89.6714 88.2629 mus_musculus ENSMUSP00000045816 90.0943 88.6792 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 88.7324 aotus_nancymaae ENSANAP00000014052 89.9083 86.6973 ENSG00000187837 homo_sapiens ENSP00000339566 89.2019 86.385 aotus_nancymaae ENSANAP00000017805 93.1373 90.1961 ENSG00000187837 homo_sapiens ENSP00000339566 95.7747 94.8357 aotus_nancymaae ENSANAP00000004145 95.7747 94.8357 ENSG00000187837 homo_sapiens ENSP00000339566 89.2019 88.7324 vicugna_pacos ENSVPAP00000007650 92.233 91.7476 ENSG00000187837 homo_sapiens ENSP00000339566 95.7747 94.3662 chlorocebus_sabaeus ENSCSAP00000018606 95.7747 94.3662 ENSG00000187837 homo_sapiens ENSP00000339566 91.0798 89.2019 mesocricetus_auratus ENSMAUP00000020118 91.9431 90.0474 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 89.6714 phocoena_sinus ENSPSNP00000007701 92.0188 89.6714 ENSG00000187837 homo_sapiens ENSP00000339566 92.9577 92.4883 camelus_dromedarius ENSCDRP00005005063 92.9577 92.4883 ENSG00000187837 homo_sapiens ENSP00000339566 89.2019 88.2629 rattus_norvegicus ENSRNOP00000077080 89.6226 88.6792 ENSG00000187837 homo_sapiens ENSP00000339566 91.0798 90.1408 prolemur_simus ENSPSMP00000006810 91.0798 90.1408 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 90.1408 microtus_ochrogaster ENSMOCP00000003292 92.4528 90.566 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 89.6714 sorex_araneus ENSSARP00000004372 91.5493 89.6714 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.6103 peromyscus_maniculatus_bairdii ENSPEMP00000005725 91.9811 91.0377 ENSG00000187837 homo_sapiens ENSP00000339566 92.4883 91.5493 bos_mutus ENSBMUP00000000991 92.4883 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.1408 cricetulus_griseus_chok1gshd ENSCGRP00001007585 91.9811 90.566 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 92.0188 pteropus_vampyrus ENSPVAP00000016597 92.0188 92.0188 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 89.2019 rhinolophus_ferrumequinum ENSRFEP00010025242 92.0188 89.2019 ENSG00000187837 homo_sapiens ENSP00000339566 90.1408 89.6714 neovison_vison ENSNVIP00000007890 66.6667 66.3194 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 91.0798 bos_taurus ENSBTAP00000015499 86.3436 85.4626 ENSG00000187837 homo_sapiens ENSP00000339566 90.1408 88.7324 heterocephalus_glaber_female ENSHGLP00000050393 90.566 89.1509 ENSG00000187837 homo_sapiens ENSP00000339566 87.3239 85.446 canis_lupus_dingo ENSCAFP00020011164 86.5116 84.6512 ENSG00000187837 homo_sapiens ENSP00000339566 87.3239 86.385 canis_lupus_dingo ENSCAFP00020002847 85.3211 84.4037 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 90.6103 sciurus_vulgaris ENSSVLP00005018446 92.4528 91.0377 ENSG00000187837 homo_sapiens ENSP00000339566 90.1408 88.2629 procavia_capensis ENSPCAP00000003345 90.566 88.6792 ENSG00000187837 homo_sapiens ENSP00000339566 90.1408 89.2019 nannospalax_galili ENSNGAP00000003587 90.9953 90.0474 ENSG00000187837 homo_sapiens ENSP00000339566 84.507 84.0376 bos_grunniens ENSBGRP00000024728 93.2643 92.7461 ENSG00000187837 homo_sapiens ENSP00000339566 90.1408 89.2019 chinchilla_lanigera ENSCLAP00000025436 90.1408 89.2019 ENSG00000187837 homo_sapiens ENSP00000339566 92.4883 91.5493 cervus_hanglu_yarkandensis ENSCHYP00000012645 92.4883 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 92.4883 91.5493 catagonus_wagneri ENSCWAP00000011049 92.4883 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.1408 ictidomys_tridecemlineatus ENSSTOP00000016043 91.9811 90.566 ENSG00000187837 homo_sapiens ENSP00000339566 92.0188 91.5493 otolemur_garnettii ENSOGAP00000020429 92.0188 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 91.5493 90.1408 urocitellus_parryii ENSUPAP00010007333 91.9811 90.566 ENSG00000187837 homo_sapiens ENSP00000339566 92.9577 91.5493 moschus_moschiferus ENSMMSP00000014467 92.9577 91.5493 ENSG00000187837 homo_sapiens ENSP00000339566 90.6103 88.7324 mus_pahari MGP_PahariEiJ_P0040481 91.0377 89.1509 ENSG00000187837 homo_sapiens ENSP00000339566 35.6808 28.169 caenorhabditis_elegans F59A7.4.1 40 31.5789 ENSG00000187837 homo_sapiens ENSP00000339566 38.4977 30.5164 caenorhabditis_elegans Y73B6BL.9a.1 42.9319 34.0314 ENSG00000187837 homo_sapiens ENSP00000339566 38.4977 31.4554 caenorhabditis_elegans F22F1.1.1 39.4231 32.2115 ENSG00000187837 homo_sapiens ENSP00000339566 38.9671 29.108 caenorhabditis_elegans C18G1.5.1 32.8063 24.5059 ENSG00000187837 homo_sapiens ENSP00000339566 38.0282 30.0469 caenorhabditis_elegans B0414.3.1 36 28.4444 ENSG00000187837 homo_sapiens ENSP00000339566 51.6432 44.1315 sphenodon_punctatus ENSSPUP00000024232 63.9535 54.6512 ENSG00000187837 homo_sapiens ENSP00000339566 45.0704 40.8451 sphenodon_punctatus ENSSPUP00000024440 64.4295 58.3893 ENSG00000187837 homo_sapiens ENSP00000339566 61.0329 53.5211 serinus_canaria ENSSCAP00000014465 54.3933 47.6987
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000122 involved_in negative regulation of transcription by RNA polymerase II 1 IEA Homo_sapiens(9606) Process GO:0000786 part_of nucleosome 1 IEA Homo_sapiens(9606) Component GO:0000791 part_of euchromatin 1 IDA Homo_sapiens(9606) Component GO:0003690 enables double-stranded DNA binding 1 IBA Homo_sapiens(9606) Function GO:0003723 enables RNA binding 1 HDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 is_active_in nucleus 2 IBA,IDA Homo_sapiens(9606) Component GO:0006334 involved_in nucleosome assembly 1 IEA Homo_sapiens(9606) Process GO:0030261 involved_in chromosome condensation 1 IBA Homo_sapiens(9606) Process GO:0030527 enables structural constituent of chromatin 1 IEA Homo_sapiens(9606) Function GO:0031490 enables chromatin DNA binding 1 IDA Homo_sapiens(9606) Function GO:0031492 enables nucleosomal DNA binding 1 IBA Homo_sapiens(9606) Function GO:0045910 involved_in negative regulation of DNA recombination 1 IBA Homo_sapiens(9606) Process GO:0080182 involved_in histone H3-K4 trimethylation 1 IEA Homo_sapiens(9606) Process GO:0098532 involved_in histone H3-K27 trimethylation 1 IEA Homo_sapiens(9606) Process
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