Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases CancerSARS-COV-2
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations N.A.
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000187837 Gene ID 3006 Accession 4716
Symbol H1-2 Alias H1C;H1.2;H1F2;H1s-1;HIST1H1C Full Name H1.2 linker histone, cluster member
Status Confidence Length 731 bases Strand Minus strand
Position 6 : 26055740 - 26056470 RNA binding domain N.A.
Summary Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H1 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000187837homo_sapiensENSP0000034450457.73245.8763homo_sapiensENSP0000033956652.582241.784
ENSG00000187837homo_sapiensENSP0000032966246.478932.8638homo_sapiensENSP0000033956646.478932.8638
ENSG00000187837homo_sapiensENSP0000034121463.768152.1739homo_sapiensENSP0000033956661.971850.7042
ENSG00000187837homo_sapiensENSP0000031979930.924922.2543homo_sapiensENSP0000033956650.234736.1502
ENSG00000187837homo_sapiensENSP0000033480536.078420homo_sapiensENSP0000033956643.192523.9437
ENSG00000187837homo_sapiensENSP0000024457373.953567.4419homo_sapiensENSP0000033956674.647968.0751
ENSG00000187837homo_sapiensENSP0000033007478.761176.5487homo_sapiensENSP0000033956683.568181.2207
ENSG00000187837homo_sapiensENSP0000030770584.931584.9315homo_sapiensENSP0000033956687.323987.3239
ENSG00000187837homo_sapiensENSP0000024453481.44880.0905homo_sapiensENSP0000033956684.50783.0986

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000187837homo_sapiensENSP0000033956698.591698.5916nomascus_leucogenysENSNLEP0000002224998.591698.5916
ENSG00000187837homo_sapiensENSP0000033956699.530599.5305pan_paniscusENSPPAP0000000337599.530599.5305
ENSG00000187837homo_sapiensENSP0000033956699.530599.5305pongo_abeliiENSPPYP0000001823399.530599.5305
ENSG00000187837homo_sapiensENSP0000033956699.530599.5305pan_troglodytesENSPTRP0000003039299.530599.5305
ENSG00000187837homo_sapiensENSP00000339566100100gorilla_gorillaENSGGOP00000007505100100
ENSG00000187837homo_sapiensENSP0000033956684.037680.2817ornithorhynchus_anatinusENSOANP0000003405378.508875
ENSG00000187837homo_sapiensENSP0000033956651.643248.3568notamacropus_eugeniiENSMEUP0000000081488.709783.0645
ENSG00000187837homo_sapiensENSP0000033956689.671489.2019dasypus_novemcinctusENSDNOP0000002638991.387690.9091
ENSG00000187837homo_sapiensENSP0000033956691.079889.6714erinaceus_europaeusENSEEUP0000000249291.509490.0943
ENSG00000187837homo_sapiensENSP0000033956694.835793.8967callithrix_jacchusENSCJAP0000005704194.835793.8967
ENSG00000187837homo_sapiensENSP0000033956695.774794.3662macaca_fascicularisENSMFAP0000006386895.774794.3662
ENSG00000187837homo_sapiensENSP0000033956688.732487.7934macaca_mulattaENSMMUP0000006507796.923195.8974
ENSG00000187837homo_sapiensENSP0000033956696.244194.3662papio_anubisENSPANP0000004919596.244194.3662
ENSG00000187837homo_sapiensENSP0000033956676.995371.3615vulpes_vulpesENSVVUP0000003514878.095272.381
ENSG00000187837homo_sapiensENSP0000033956674.647970.892vulpes_vulpesENSVVUP0000000114074.647970.892
ENSG00000187837homo_sapiensENSP0000033956687.793487.3239vulpes_vulpesENSVVUP0000003506986.976786.5116
ENSG00000187837homo_sapiensENSP0000033956689.671488.2629mus_spretusMGP_SPRETEiJ_P003545890.094388.6792
ENSG00000187837homo_sapiensENSP0000033956684.976584.9765equus_asinusENSEASP0000504203092.346992.3469
ENSG00000187837homo_sapiensENSP0000033956691.079890.1408capra_hircusENSCHIP0000002489185.462684.5815
ENSG00000187837homo_sapiensENSP0000033956678.403877.9343loxodonta_africanaENSLAFP0000002203091.256890.7104
ENSG00000187837homo_sapiensENSP0000033956690.610390.6103panthera_leoENSPLOP0000001777590.610390.6103
ENSG00000187837homo_sapiensENSP0000033956686.854586.385ailuropoda_melanoleucaENSAMEP0000001681384.090983.6364
ENSG00000187837homo_sapiensENSP0000033956692.018891.0798bos_indicus_hybridENSBIXP0000503132386.343685.4626
ENSG00000187837homo_sapiensENSP0000033956685.44680.7512oryctolagus_cuniculusENSOCUP0000001909549.056646.3612
ENSG00000187837homo_sapiensENSP0000033956685.44685.446equus_caballusENSECAP0000006134092.857192.8571
ENSG00000187837homo_sapiensENSP0000033956692.957792.0188canis_lupus_familiarisENSCAFP0084503533992.957792.0188
ENSG00000187837homo_sapiensENSP0000033956690.610390.6103panthera_pardusENSPPRP0000002518390.610390.6103
ENSG00000187837homo_sapiensENSP0000033956691.549390.1408marmota_marmota_marmotaENSMMMP0000000198791.981190.566
ENSG00000187837homo_sapiensENSP0000033956690.610387.3239balaenoptera_musculusENSBMSP0001001437290.610387.3239
ENSG00000187837homo_sapiensENSP0000033956692.488391.5493cavia_porcellusENSCPOP0000002042292.488391.5493
ENSG00000187837homo_sapiensENSP0000033956689.201987.3239felis_catusENSFCAP0000000350957.401856.1934
ENSG00000187837homo_sapiensENSP0000033956691.549390.6103bison_bison_bisonENSBBBP0000002860377.38176.5873
ENSG00000187837homo_sapiensENSP0000033956692.018889.6714monodon_monocerosENSMMNP0001501630092.018889.6714
ENSG00000187837homo_sapiensENSP0000033956689.671487.7934jaculus_jaculusENSJJAP0000000901790.521388.6256
ENSG00000187837homo_sapiensENSP0000033956692.018891.0798ovis_aries_rambouilletENSOARP0002000898192.018891.0798
ENSG00000187837homo_sapiensENSP0000033956690.610390.1408ursus_maritimusENSUMAP0000002875190.610390.1408
ENSG00000187837homo_sapiensENSP0000033956690.610390.1408ochotona_princepsENSOPRP0000001287890.610390.1408
ENSG00000187837homo_sapiensENSP0000033956692.018889.6714delphinapterus_leucasENSDLEP0000002660892.018889.6714
ENSG00000187837homo_sapiensENSP0000033956692.488390.6103physeter_catodonENSPCTP0000501439492.488390.6103
ENSG00000187837homo_sapiensENSP0000033956689.201987.7934mus_caroliMGP_CAROLIEiJ_P003387889.622688.2076
ENSG00000187837homo_sapiensENSP0000033956689.671488.2629mus_musculusENSMUSP0000004581690.094388.6792
ENSG00000187837homo_sapiensENSP0000033956692.018888.7324aotus_nancymaaeENSANAP0000001405289.908386.6973
ENSG00000187837homo_sapiensENSP0000033956689.201986.385aotus_nancymaaeENSANAP0000001780593.137390.1961
ENSG00000187837homo_sapiensENSP0000033956695.774794.8357aotus_nancymaaeENSANAP0000000414595.774794.8357
ENSG00000187837homo_sapiensENSP0000033956689.201988.7324vicugna_pacosENSVPAP0000000765092.23391.7476
ENSG00000187837homo_sapiensENSP0000033956695.774794.3662chlorocebus_sabaeusENSCSAP0000001860695.774794.3662
ENSG00000187837homo_sapiensENSP0000033956691.079889.2019mesocricetus_auratusENSMAUP0000002011891.943190.0474
ENSG00000187837homo_sapiensENSP0000033956692.018889.6714phocoena_sinusENSPSNP0000000770192.018889.6714
ENSG00000187837homo_sapiensENSP0000033956692.957792.4883camelus_dromedariusENSCDRP0000500506392.957792.4883
ENSG00000187837homo_sapiensENSP0000033956689.201988.2629rattus_norvegicusENSRNOP0000007708089.622688.6792
ENSG00000187837homo_sapiensENSP0000033956691.079890.1408prolemur_simusENSPSMP0000000681091.079890.1408
ENSG00000187837homo_sapiensENSP0000033956692.018890.1408microtus_ochrogasterENSMOCP0000000329292.452890.566
ENSG00000187837homo_sapiensENSP0000033956691.549389.6714sorex_araneusENSSARP0000000437291.549389.6714
ENSG00000187837homo_sapiensENSP0000033956691.549390.6103peromyscus_maniculatus_bairdiiENSPEMP0000000572591.981191.0377
ENSG00000187837homo_sapiensENSP0000033956692.488391.5493bos_mutusENSBMUP0000000099192.488391.5493
ENSG00000187837homo_sapiensENSP0000033956691.549390.1408cricetulus_griseus_chok1gshdENSCGRP0000100758591.981190.566
ENSG00000187837homo_sapiensENSP0000033956692.018892.0188pteropus_vampyrusENSPVAP0000001659792.018892.0188
ENSG00000187837homo_sapiensENSP0000033956692.018889.2019rhinolophus_ferrumequinumENSRFEP0001002524292.018889.2019
ENSG00000187837homo_sapiensENSP0000033956690.140889.6714neovison_visonENSNVIP0000000789066.666766.3194
ENSG00000187837homo_sapiensENSP0000033956692.018891.0798bos_taurusENSBTAP0000001549986.343685.4626
ENSG00000187837homo_sapiensENSP0000033956690.140888.7324heterocephalus_glaber_femaleENSHGLP0000005039390.56689.1509
ENSG00000187837homo_sapiensENSP0000033956687.323985.446canis_lupus_dingoENSCAFP0002001116486.511684.6512
ENSG00000187837homo_sapiensENSP0000033956687.323986.385canis_lupus_dingoENSCAFP0002000284785.321184.4037
ENSG00000187837homo_sapiensENSP0000033956692.018890.6103sciurus_vulgarisENSSVLP0000501844692.452891.0377
ENSG00000187837homo_sapiensENSP0000033956690.140888.2629procavia_capensisENSPCAP0000000334590.56688.6792
ENSG00000187837homo_sapiensENSP0000033956690.140889.2019nannospalax_galiliENSNGAP0000000358790.995390.0474
ENSG00000187837homo_sapiensENSP0000033956684.50784.0376bos_grunniensENSBGRP0000002472893.264392.7461
ENSG00000187837homo_sapiensENSP0000033956690.140889.2019chinchilla_lanigeraENSCLAP0000002543690.140889.2019
ENSG00000187837homo_sapiensENSP0000033956692.488391.5493cervus_hanglu_yarkandensisENSCHYP0000001264592.488391.5493
ENSG00000187837homo_sapiensENSP0000033956692.488391.5493catagonus_wagneriENSCWAP0000001104992.488391.5493
ENSG00000187837homo_sapiensENSP0000033956691.549390.1408ictidomys_tridecemlineatusENSSTOP0000001604391.981190.566
ENSG00000187837homo_sapiensENSP0000033956692.018891.5493otolemur_garnettiiENSOGAP0000002042992.018891.5493
ENSG00000187837homo_sapiensENSP0000033956691.549390.1408urocitellus_parryiiENSUPAP0001000733391.981190.566
ENSG00000187837homo_sapiensENSP0000033956692.957791.5493moschus_moschiferusENSMMSP0000001446792.957791.5493
ENSG00000187837homo_sapiensENSP0000033956690.610388.7324mus_pahariMGP_PahariEiJ_P004048191.037789.1509
ENSG00000187837homo_sapiensENSP0000033956635.680828.169caenorhabditis_elegansF59A7.4.14031.5789
ENSG00000187837homo_sapiensENSP0000033956638.497730.5164caenorhabditis_elegansY73B6BL.9a.142.931934.0314
ENSG00000187837homo_sapiensENSP0000033956638.497731.4554caenorhabditis_elegansF22F1.1.139.423132.2115
ENSG00000187837homo_sapiensENSP0000033956638.967129.108caenorhabditis_elegansC18G1.5.132.806324.5059
ENSG00000187837homo_sapiensENSP0000033956638.028230.0469caenorhabditis_elegansB0414.3.13628.4444
ENSG00000187837homo_sapiensENSP0000033956651.643244.1315sphenodon_punctatusENSSPUP0000002423263.953554.6512
ENSG00000187837homo_sapiensENSP0000033956645.070440.8451sphenodon_punctatusENSSPUP0000002444064.429558.3893
ENSG00000187837homo_sapiensENSP0000033956661.032953.5211serinus_canariaENSSCAP0000001446554.393347.6987

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000122involved_in negative regulation of transcription by RNA polymerase II1IEAHomo_sapiens(9606)Process
GO:0000786part_of nucleosome1IEAHomo_sapiens(9606)Component
GO:0000791part_of euchromatin1IDAHomo_sapiens(9606)Component
GO:0003690enables double-stranded DNA binding1IBAHomo_sapiens(9606)Function
GO:0003723enables RNA binding1HDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634is_active_in nucleus2IBA,IDAHomo_sapiens(9606)Component
GO:0006334involved_in nucleosome assembly1IEAHomo_sapiens(9606)Process
GO:0030261involved_in chromosome condensation1IBAHomo_sapiens(9606)Process
GO:0030527enables structural constituent of chromatin1IEAHomo_sapiens(9606)Function
GO:0031490enables chromatin DNA binding1IDAHomo_sapiens(9606)Function
GO:0031492enables nucleosomal DNA binding1IBAHomo_sapiens(9606)Function
GO:0045910involved_in negative regulation of DNA recombination1IBAHomo_sapiens(9606)Process
GO:0080182involved_in histone H3-K4 trimethylation1IEAHomo_sapiens(9606)Process
GO:0098532involved_in histone H3-K27 trimethylation1IEAHomo_sapiens(9606)Process

Expression