RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Non-canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	mRNA
Moonlighting functions	N.A.
Localizations	Stress granucle
BulkPerturb-seq

Description

Ensembl ID	ENSG00000288701	Gene ID	84726	Accession	28121
Symbol	PRRC2B	Alias	BAT2L;BAT2L1;LQFBS-1;KIAA0515	Full Name	proline rich coiled-coil 2B
Status	Confidence	Length	126562 bases	Strand	Plus strand
Position	9 : 131373636 - 131500197	RNA binding domain	N.A.
Summary	Enables RNA binding activity. Predicted to be involved in cell differentiation. Predicted to act upstream of or within in utero embryonic development. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal
37125639	RNA binding protein PRRC2B mediates translation of specific mRNAs and regulates cell cycle progression.	Feng Jiang	2023-06-23	Nucleic acids research
36092348	Characterization of somatic mutations and pathway alterations during hepatocellular carcinoma vascular invasion using next-generation sequencing.	Qi Li	2022-08-01	Journal of gastrointestinal oncology

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PRRC2B-202	ENST00000682525	266	38aa	ENSP00000507978
PRRC2B-208	ENST00000684596	11253	2229aa	ENSP00000508005
PRRC2B-206	ENST00000683519	11238	2229aa	ENSP00000508048
PRRC2B-201	ENST00000682501	9157	1535aa	ENSP00000508073
PRRC2B-209	ENST00000684694	797	No protein	-
PRRC2B-210	ENST00000684736	535	178aa	ENSP00000507145
PRRC2B-205	ENST00000683353	1762	588aa	ENSP00000507866
PRRC2B-203	ENST00000682662	6949	877aa	ENSP00000507615
PRRC2B-204	ENST00000683161	4950	178aa	ENSP00000508072
PRRC2B-207	ENST00000684112	5366	No protein	-

Gene Model

Click here to download ENSG00000288701's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000288701's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003723	enables RNA binding	1	HDA	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0030154	involved_in cell differentiation	1	IBA	Homo_sapiens(9606)	Process

Expression