RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
mRNA
Moonlighting functions
N.A.
Localizations
Nucleoli
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000226941 Gene ID
378951 Accession
23917
Symbol
RBMY1J
Alias
NA
Full Name
RNA binding motif protein Y-linked family 1 member J
Status
Confidence
Length
14472 bases
Strand
Plus strand
Position
Y : 22403410 - 22417881
RNA binding domain
RBM1CTR , RRM_1
Summary
This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000250831
RRM_1
PF00076 1.2e-20
1
ENSP00000250831
RBM1CTR
PF08081 2.3e-21
2
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
31134133 Identifying Novel Copy Number Variants in Azoospermia Factor Regions and Evaluating Their Effects on Spermatogenic Impairment.
Ran Zhou
2019-01-01
Frontiers in genetics
Name
Transcript ID
bp
Protein
Translation ID
RBMY1J-202
ENST00000470460
1717
No protein
-
RBMY1J-201
ENST00000250831
1946
496aa
ENSP00000250831
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000226941 homo_sapiens ENSP00000295971 12.9848 7.75717 homo_sapiens ENSP00000250831 15.5242 9.27419 ENSG00000226941 homo_sapiens ENSP00000304139 59.4388 48.2143 homo_sapiens ENSP00000250831 46.9758 38.1048 ENSG00000226941 homo_sapiens ENSP00000417451 18.7441 14.3393 homo_sapiens ENSP00000250831 40.3226 30.8468 ENSG00000226941 homo_sapiens ENSP00000478691 34.3109 20.5279 homo_sapiens ENSP00000250831 23.5887 14.1129 ENSG00000226941 homo_sapiens ENSP00000445366 13.5977 7.93201 homo_sapiens ENSP00000250831 9.67742 5.64516 ENSG00000226941 homo_sapiens ENSP00000341826 33.6021 19.8925 homo_sapiens ENSP00000250831 25.2016 14.9194 ENSG00000226941 homo_sapiens ENSP00000350090 37.5 22.8125 homo_sapiens ENSP00000250831 24.1935 14.7177 ENSG00000226941 homo_sapiens ENSP00000493805 38.4375 23.125 homo_sapiens ENSP00000250831 24.7984 14.9194 ENSG00000226941 homo_sapiens ENSP00000376309 32.2751 20.3704 homo_sapiens ENSP00000250831 24.5968 15.5242 ENSG00000226941 homo_sapiens ENSP00000284073 30.1829 17.9878 homo_sapiens ENSP00000250831 19.9597 11.8952 ENSG00000226941 homo_sapiens ENSP00000310471 22.2841 12.8134 homo_sapiens ENSP00000250831 16.129 9.27419 ENSG00000226941 homo_sapiens ENSP00000309166 21.7033 12.3626 homo_sapiens ENSP00000250831 15.9274 9.07258 ENSG00000226941 homo_sapiens ENSP00000498248 71.5385 58.9744 homo_sapiens ENSP00000250831 56.25 46.371 ENSG00000226941 homo_sapiens ENSP00000359645 73.6573 61.3811 homo_sapiens ENSP00000250831 58.0645 48.3871 ENSG00000226941 homo_sapiens ENSP00000401371 22.2798 12.1762 homo_sapiens ENSP00000250831 17.3387 9.47581 ENSG00000226941 homo_sapiens ENSP00000257552 27.9006 16.0221 homo_sapiens ENSP00000250831 20.3629 11.6935 ENSG00000226941 homo_sapiens ENSP00000281722 15.0094 7.50469 homo_sapiens ENSP00000250831 16.129 8.06452 ENSG00000226941 homo_sapiens ENSP00000352956 12.7563 7.51708 homo_sapiens ENSP00000250831 11.2903 6.65323 ENSG00000226941 homo_sapiens ENSP00000362936 23.3449 13.5889 homo_sapiens ENSP00000250831 13.5081 7.8629 ENSG00000226941 homo_sapiens ENSP00000313199 26.4789 17.4648 homo_sapiens ENSP00000250831 18.9516 12.5 ENSG00000226941 homo_sapiens ENSP00000253363 11.8868 7.35849 homo_sapiens ENSP00000250831 12.7016 7.8629 ENSG00000226941 homo_sapiens ENSP00000363109 13.3106 7.84983 homo_sapiens ENSP00000250831 15.7258 9.27419 ENSG00000226941 homo_sapiens ENSP00000316042 32.1311 20.6557 homo_sapiens ENSP00000250831 19.7581 12.7016 ENSG00000226941 homo_sapiens ENSP00000318195 12.2535 6.47887 homo_sapiens ENSP00000250831 17.5403 9.27419 ENSG00000226941 homo_sapiens ENSP00000394902 22.6667 11.7333 homo_sapiens ENSP00000250831 17.1371 8.87097 ENSG00000226941 homo_sapiens ENSP00000351108 27.4096 17.1687 homo_sapiens ENSP00000250831 18.3468 11.4919 ENSG00000226941 homo_sapiens ENSP00000261741 9.79167 4.58333 homo_sapiens ENSP00000250831 18.9516 8.87097 ENSG00000226941 homo_sapiens ENSP00000233078 31.2039 18.9189 homo_sapiens ENSP00000250831 25.6048 15.5242 ENSG00000226941 homo_sapiens ENSP00000295470 20.4762 12.381 homo_sapiens ENSP00000250831 17.3387 10.4839 ENSG00000226941 homo_sapiens ENSP00000466025 39.3939 28.2828 homo_sapiens ENSP00000250831 23.5887 16.9355 ENSG00000226941 homo_sapiens ENSP00000365950 63.6943 49.0446 homo_sapiens ENSP00000250831 20.1613 15.5242 ENSG00000226941 homo_sapiens ENSP00000307155 100 100 homo_sapiens ENSP00000250831 100 100 ENSG00000226941 homo_sapiens ENSP00000372105 98.9919 98.7903 homo_sapiens ENSP00000250831 98.9919 98.7903 ENSG00000226941 homo_sapiens ENSP00000372154 99.1936 99.1936 homo_sapiens ENSP00000250831 99.1936 99.1936 ENSG00000226941 homo_sapiens ENSP00000372127 98.9919 98.9919 homo_sapiens ENSP00000250831 98.9919 98.9919 ENSG00000226941 homo_sapiens ENSP00000372484 99.1936 99.1936 homo_sapiens ENSP00000250831 99.1936 99.1936
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000226941 homo_sapiens ENSP00000250831 93.5484 92.1371 pan_troglodytes ENSPTRP00000086742 92.0635 90.6746 ENSG00000226941 homo_sapiens ENSP00000250831 90.9274 89.1129 pan_troglodytes ENSPTRP00000087489 91.6667 89.8374 ENSG00000226941 homo_sapiens ENSP00000250831 95.5645 94.5564 pan_troglodytes ENSPTRP00000065125 95.3722 94.3662 ENSG00000226941 homo_sapiens ENSP00000250831 92.9436 92.1371 pan_troglodytes ENSPTRP00000060371 94.4672 93.6475 ENSG00000226941 homo_sapiens ENSP00000250831 93.3468 91.9355 pan_troglodytes ENSPTRP00000063209 91.8651 90.4762 ENSG00000226941 homo_sapiens ENSP00000250831 95.1613 94.1532 pan_troglodytes ENSPTRP00000086688 94.9698 93.9638 ENSG00000226941 homo_sapiens ENSP00000250831 88.1048 87.0968 pan_troglodytes ENSPTRP00000064207 93.9785 92.9032 ENSG00000226941 homo_sapiens ENSP00000250831 93.3468 91.9355 pan_troglodytes ENSPTRP00000062985 91.8651 90.4762 ENSG00000226941 homo_sapiens ENSP00000250831 81.8548 76.6129 pan_troglodytes ENSPTRP00000065819 86.5672 81.0235 ENSG00000226941 homo_sapiens ENSP00000250831 88.5081 87.2984 pan_troglodytes ENSPTRP00000086775 92.2269 90.9664 ENSG00000226941 homo_sapiens ENSP00000250831 95.3629 94.1532 pan_troglodytes ENSPTRP00000070297 94.7896 93.5872 ENSG00000226941 homo_sapiens ENSP00000250831 84.2742 80.4436 macaca_fascicularis ENSMFAP00000060089 70.6081 67.3987 ENSG00000226941 homo_sapiens ENSP00000250831 84.4758 80.6452 macaca_mulatta ENSMMUP00000075587 66.6137 63.593 ENSG00000226941 homo_sapiens ENSP00000250831 37.7016 34.6774 macaca_mulatta ENSMMUP00000042043 80.9524 74.4589 ENSG00000226941 homo_sapiens ENSP00000250831 26.8145 23.9919 marmota_marmota_marmota ENSMMMP00000008320 80.6061 72.1212 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.4516 mus_musculus ENSMUSP00000139527 55.7895 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.4516 mus_musculus ENSMUSP00000140704 55.7895 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.4516 mus_musculus ENSMUSP00000139784 55.7895 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 42.5403 31.4516 mus_musculus ENSMUSP00000140512 55.5263 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 22.379 16.9355 mus_musculus ENSMUSP00000139969 66.8675 50.6024 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.6532 mus_musculus ENSMUSP00000140936 55.7895 41.3158 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.4516 mus_musculus ENSMUSP00000097930 55.7895 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.6532 mus_musculus ENSMUSP00000140575 55.7895 41.3158 ENSG00000226941 homo_sapiens ENSP00000250831 42.7419 31.4516 mus_musculus ENSMUSP00000139659 55.7895 41.0526 ENSG00000226941 homo_sapiens ENSP00000250831 43.1452 32.0564 mus_musculus ENSMUSP00000141183 56.3158 41.8421 ENSG00000226941 homo_sapiens ENSP00000250831 71.9758 66.129 chlorocebus_sabaeus ENSCSAP00000014317 73.0061 67.0757 ENSG00000226941 homo_sapiens ENSP00000250831 45.1613 34.4758 rattus_norvegicus ENSRNOP00000074643 57.732 44.0722 ENSG00000226941 homo_sapiens ENSP00000250831 12.0968 9.27419 mus_spicilegus ENSMSIP00000005559 75 57.5 ENSG00000226941 homo_sapiens ENSP00000250831 70.7661 67.5403 rhinopithecus_bieti ENSRBIP00000001570 83.1754 79.3839 ENSG00000226941 homo_sapiens ENSP00000250831 26.8145 23.5887 urocitellus_parryii ENSUPAP00010011141 80.6061 70.9091 ENSG00000226941 homo_sapiens ENSP00000250831 70.7661 67.9436 rhinopithecus_roxellana ENSRROP00000010671 83.3729 80.0475 ENSG00000226941 homo_sapiens ENSP00000250831 12.2984 9.07258 eptatretus_burgeri ENSEBUP00000024062 65.5914 48.3871 ENSG00000226941 homo_sapiens ENSP00000250831 12.7016 9.47581 eptatretus_burgeri ENSEBUP00000011933 67.0213 50
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0003723 enables RNA binding 1 IBA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005654 located_in nucleoplasm 1 IDA Homo_sapiens(9606) Component GO:0005681 part_of spliceosomal complex 1 IBA Homo_sapiens(9606) Component GO:0005730 located_in nucleolus 1 IDA Homo_sapiens(9606) Component GO:0006397 involved_in mRNA processing 1 IEA Homo_sapiens(9606) Process GO:0008380 involved_in RNA splicing 1 IEA Homo_sapiens(9606) Process GO:0042802 enables identical protein binding 1 IPI Homo_sapiens(9606) Function GO:0048026 involved_in positive regulation of mRNA splicing, via spliceosome 1 IBA Homo_sapiens(9606) Process
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