RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	TF
Localizations	N.A.
BulkPerturb-seq

Description

Ensembl ID	ENSG00000188321	Gene ID	84527	Accession	28197
Symbol	ZNF559	Alias	NBLA00121	Full Name	zinc finger protein 559
Status	Confidence	Length	27391 bases	Strand	Plus strand
Position	19 : 9323772 - 9351162	RNA binding domain	zf-met
Summary	Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000468153	zf-met	PF12874	0.00037	1
ENSP00000468153	zf-met	PF12874	0.00037	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ZNF559-206	ENST00000587557	2991	602aa	ENSP00000468153
ZNF559-213	ENST00000603380	4675	538aa	ENSP00000474760
ZNF559-211	ENST00000592504	1398	175aa	ENSP00000467841
ZNF559-203	ENST00000585352	967	84aa	ENSP00000467048
ZNF559-201	ENST00000317221	2732	84aa	ENSP00000325393
ZNF559-205	ENST00000586255	1016	149aa	ENSP00000465787
ZNF559-212	ENST00000592896	1488	112aa	ENSP00000466496
ZNF559-214	ENST00000605750	2117	524aa	ENSP00000474719
ZNF559-208	ENST00000589208	569	147aa	ENSP00000474260
ZNF559-210	ENST00000592298	588	68aa	ENSP00000468299
ZNF559-204	ENST00000585377	571	39aa	ENSP00000465526
ZNF559-202	ENST00000393883	5095	538aa	ENSP00000377461
ZNF559-207	ENST00000588124	801	81aa	ENSP00000466325
ZNF559-209	ENST00000591652	692	52aa	ENSP00000466745

Gene Model

Click here to download ENSG00000188321's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000188321's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000122	involved_in negative regulation of transcription by RNA polymerase II	1	IBA	Homo_sapiens(9606)	Process
GO:0000977	enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	1	IBA	Homo_sapiens(9606)	Function
GO:0001227	enables DNA-binding transcription repressor activity, RNA polymerase II-specific	1	IBA	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0005634	located_in nucleus	1	IEA	Homo_sapiens(9606)	Component
GO:0046872	enables metal ion binding	1	IEA	Homo_sapiens(9606)	Function

Expression