Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs rRNA
Moonlighting functions N.A.
Localizations N.A.
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000171861 Gene ID 55178 Accession 18485
Symbol MRM3 Alias RMTL1;RNMTL1 Full Name mitochondrial rRNA methyltransferase 3
Status Confidence Length 10157 bases Strand Plus strand
Position 17 : 782353 - 792509 RNA binding domain SpoU_methylase
Summary Efficient translation of mitochondrial-derived transcripts requires proper assembly of the large subunit of the mitochondrial ribosome. Central to the biogenesis of this large subunit is the A-loop of mitochondrial 16S rRNA, which is modified by three rRNA methyltransferases located near mtDNA nucleoids. The protein encoded by this gene methylates G(1370) of 16S rRNA, and this modification is necessary for proper ribosomal large subnit assembly. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000306080 SpoU_methylase PF00588 5.8e-21 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
MRM3-201 ENST00000304478 1729 420aa ENSP00000306080
MRM3-204 ENST00000574916 770 No protein -
MRM3-203 ENST00000574509 727 110aa ENSP00000458328
MRM3-202 ENST00000571157 572 177aa ENSP00000460957

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
75296Diabetes Mellitus, Type 24E-623300278

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000171861homo_sapiensENSP0000004087711.3516.29241homo_sapiensENSP0000030608043.809524.2857
ENSG00000171861homo_sapiensENSP0000048155931.444815.864homo_sapiensENSP0000030608026.428613.3333

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000171861homo_sapiensENSP0000030608097.857195.9524nomascus_leucogenysENSNLEP0000002583097.857195.9524
ENSG00000171861homo_sapiensENSP0000030608010099.5238pan_paniscusENSPPAP0000003109910099.5238
ENSG00000171861homo_sapiensENSP0000030608098.571496.9048pongo_abeliiENSPPYP0000000874598.571496.9048
ENSG00000171861homo_sapiensENSP0000030608010099.7619pan_troglodytesENSPTRP0000001452710099.7619
ENSG00000171861homo_sapiensENSP00000306080100100gorilla_gorillaENSGGOP00000015137100100
ENSG00000171861homo_sapiensENSP0000030608047.61928.0952ornithorhynchus_anatinusENSOANP0000003478913.07197.71242
ENSG00000171861homo_sapiensENSP0000030608079.761967.619sarcophilus_harrisiiENSSHAP0000001359973.951462.6932
ENSG00000171861homo_sapiensENSP0000030608065.238158.3333notamacropus_eugeniiENSMEUP0000001113191.029981.3953
ENSG00000171861homo_sapiensENSP0000030608089.761982.381choloepus_hoffmanniENSCHOP0000001007589.976182.5776
ENSG00000171861homo_sapiensENSP0000030608091.428682.381dasypus_novemcinctusENSDNOP0000000331191.646882.5776
ENSG00000171861homo_sapiensENSP0000030608056.904849.2857erinaceus_europaeusENSEEUP0000000055860.050352.0101
ENSG00000171861homo_sapiensENSP0000030608058.571453.0952echinops_telfairiENSETEP0000001450258.432352.9691
ENSG00000171861homo_sapiensENSP0000030608080.952474.0476callithrix_jacchusENSCJAP0000009142867.460361.7063
ENSG00000171861homo_sapiensENSP0000030608097.38195cercocebus_atysENSCATP0000001630097.38195
ENSG00000171861homo_sapiensENSP0000030608096.666794.0476macaca_fascicularisENSMFAP0000002802596.666794.0476
ENSG00000171861homo_sapiensENSP0000030608096.428693.5714macaca_mulattaENSMMUP0000007704696.428693.5714
ENSG00000171861homo_sapiensENSP0000030608096.428693.8095macaca_nemestrinaENSMNEP0000001780096.428693.8095
ENSG00000171861homo_sapiensENSP0000030608096.666794.5238papio_anubisENSPANP0000001946596.437194.2993
ENSG00000171861homo_sapiensENSP0000030608096.428694.5238mandrillus_leucophaeusENSMLEP0000002019496.428694.5238
ENSG00000171861homo_sapiensENSP0000030608090.476281.9048tursiops_truncatusENSTTRP0000000361089.834581.3239
ENSG00000171861homo_sapiensENSP0000030608090.476282.619vulpes_vulpesENSVVUP0000002951780.168873.2067
ENSG00000171861homo_sapiensENSP0000030608089.523880.7143mus_spretusMGP_SPRETEiJ_P002974389.952281.1005
ENSG00000171861homo_sapiensENSP0000030608090.952484.7619equus_asinusENSEASP0000504334890.952484.7619
ENSG00000171861homo_sapiensENSP0000030608091.428683.0952capra_hircusENSCHIP0000003051091.211482.8979
ENSG00000171861homo_sapiensENSP0000030608090.714382.619loxodonta_africanaENSLAFP0000001397790.070982.0331
ENSG00000171861homo_sapiensENSP0000030608089.285782.1429panthera_leoENSPLOP0000002294677.639871.4286
ENSG00000171861homo_sapiensENSP0000030608090.714383.8095ailuropoda_melanoleucaENSAMEP0000000878190.070983.2151
ENSG00000171861homo_sapiensENSP0000030608085.952478.0952oryctolagus_cuniculusENSOCUP0000000191287.409279.4189
ENSG00000171861homo_sapiensENSP0000030608090.238184.0476equus_caballusENSECAP0000002187585.55379.684
ENSG00000171861homo_sapiensENSP0000030608090.714383.8095canis_lupus_familiarisENSCAFP0084501907790.070983.2151
ENSG00000171861homo_sapiensENSP0000030608089.285782.381panthera_pardusENSPPRP0000001550489.073682.1853
ENSG00000171861homo_sapiensENSP0000030608090.952483.8095marmota_marmota_marmotaENSMMMP0000002764090.952483.8095
ENSG00000171861homo_sapiensENSP0000030608089.761980.2381balaenoptera_musculusENSBMSP0001002462388.705979.2941
ENSG00000171861homo_sapiensENSP0000030608090.714384.5238cavia_porcellusENSCPOP0000001596089.647183.5294
ENSG00000171861homo_sapiensENSP0000030608089.523883.0952felis_catusENSFCAP0000000155277.846872.2567
ENSG00000171861homo_sapiensENSP0000030608090.714383.0952ursus_americanusENSUAMP0000001720490.070982.5059
ENSG00000171861homo_sapiensENSP0000030608079.761969.7619monodelphis_domesticaENSMODP0000001256174.776865.4018
ENSG00000171861homo_sapiensENSP0000030608090.476282.381bison_bison_bisonENSBBBP0000001298891.787483.5749
ENSG00000171861homo_sapiensENSP0000030608091.190582.619monodon_monocerosENSMMNP0001502937290.543782.0331
ENSG00000171861homo_sapiensENSP0000030608090.476282.1429sus_scrofaENSSSCP0000001886590.047481.7536
ENSG00000171861homo_sapiensENSP0000030608092.142985.9524microcebus_murinusENSMICP0000003760992.142985.9524
ENSG00000171861homo_sapiensENSP0000030608081.428674.7619octodon_degusENSODEP0000001271393.18885.5586
ENSG00000171861homo_sapiensENSP0000030608087.38177.8571jaculus_jaculusENSJJAP0000002484088.433778.7952
ENSG00000171861homo_sapiensENSP0000030608091.666782.619ovis_aries_rambouilletENSOARP0002001571091.016582.0331
ENSG00000171861homo_sapiensENSP0000030608090.714383.3333ursus_maritimusENSUMAP0000001364690.070982.7423
ENSG00000171861homo_sapiensENSP000003060806053.8095ochotona_princepsENSOPRP0000000231867.924560.9164
ENSG00000171861homo_sapiensENSP0000030608091.190582.619delphinapterus_leucasENSDLEP0000001038190.543782.0331
ENSG00000171861homo_sapiensENSP0000030608090.238181.6667physeter_catodonENSPCTP0000500756772.466565.5832
ENSG00000171861homo_sapiensENSP0000030608089.047681.6667mus_caroliMGP_CAROLIEiJ_P002834989.473782.0574
ENSG00000171861homo_sapiensENSP0000030608089.047680.7143mus_musculusENSMUSP0000004288289.473781.1005
ENSG00000171861homo_sapiensENSP0000030608088.095278.5714dipodomys_ordiiENSDORP0000000708689.588479.9031
ENSG00000171861homo_sapiensENSP0000030608077.857170mustela_putorius_furoENSMPUP0000001369089.344380.3279
ENSG00000171861homo_sapiensENSP0000030608094.047689.2857aotus_nancymaaeENSANAP0000000168292.074687.4126
ENSG00000171861homo_sapiensENSP0000030608093.333388.5714saimiri_boliviensis_boliviensisENSSBOP0000002624493.779988.9952
ENSG00000171861homo_sapiensENSP0000030608093.095284.0476vicugna_pacosENSVPAP0000000872192.43583.4515
ENSG00000171861homo_sapiensENSP0000030608097.142995chlorocebus_sabaeusENSCSAP0000001037597.142995
ENSG00000171861homo_sapiensENSP000003060809082.1429mesocricetus_auratusENSMAUP0000002094590.214882.3389
ENSG00000171861homo_sapiensENSP0000030608090.952481.9048phocoena_sinusENSPSNP0000003075890.307381.3239
ENSG00000171861homo_sapiensENSP0000030608090.476281.4286camelus_dromedariusENSCDRP0000501980282.788774.5098
ENSG00000171861homo_sapiensENSP0000030608092.38185.7143carlito_syrichtaENSTSYP0000000555192.161585.5107
ENSG00000171861homo_sapiensENSP0000030608088.809582.619panthera_tigris_altaicaENSPTIP0000002562788.809582.619
ENSG00000171861homo_sapiensENSP0000030608089.523882.1429rattus_norvegicusENSRNOP0000005311789.952282.5359
ENSG00000171861homo_sapiensENSP0000030608092.857186.4286prolemur_simusENSPSMP0000000132592.636686.2233
ENSG00000171861homo_sapiensENSP0000030608090.714382.1429microtus_ochrogasterENSMOCP0000002136490.930882.3389
ENSG00000171861homo_sapiensENSP0000030608081.666773.3333sorex_araneusENSSARP0000000559686.39877.5819
ENSG00000171861homo_sapiensENSP0000030608090.476282.619peromyscus_maniculatus_bairdiiENSPEMP0000002636090.476282.619
ENSG00000171861homo_sapiensENSP0000030608088.809579.5238mus_spicilegusENSMSIP0000002957089.234579.9043
ENSG00000171861homo_sapiensENSP0000030608090.714382.8571cricetulus_griseus_chok1gshdENSCGRP0000101350490.930883.0549
ENSG00000171861homo_sapiensENSP0000030608090.476282.619pteropus_vampyrusENSPVAP0000001103890.261382.4228
ENSG00000171861homo_sapiensENSP0000030608090.714382.619myotis_lucifugusENSMLUP0000000137990.714382.619
ENSG00000171861homo_sapiensENSP0000030608076.904868.8095vombatus_ursinusENSVURP0001001105973.744365.9817
ENSG00000171861homo_sapiensENSP0000030608089.761982.381rhinolophus_ferrumequinumENSRFEP0001001505290.191482.7751
ENSG00000171861homo_sapiensENSP0000030608090.952482.8571neovison_visonENSNVIP0000000905390.307382.2695
ENSG00000171861homo_sapiensENSP0000030608092.38184.7619heterocephalus_glaber_femaleENSHGLP0000001335391.943184.3602
ENSG00000171861homo_sapiensENSP0000030608095.714393.0952rhinopithecus_bietiENSRBIP0000004184795.486992.8741
ENSG00000171861homo_sapiensENSP0000030608090.714383.8095canis_lupus_dingoENSCAFP0002001363490.070983.2151
ENSG00000171861homo_sapiensENSP0000030608091.666784.5238sciurus_vulgarisENSSVLP0000501729691.666784.5238
ENSG00000171861homo_sapiensENSP0000030608077.61968.8095phascolarctos_cinereusENSPCIP0000003474372.605864.3653
ENSG00000171861homo_sapiensENSP0000030608088.809580.9524procavia_capensisENSPCAP0000000749688.598680.7601
ENSG00000171861homo_sapiensENSP0000030608091.190585.2381nannospalax_galiliENSNGAP0000000826691.190585.2381
ENSG00000171861homo_sapiensENSP0000030608090.476282.381bos_grunniensENSBGRP0000002523091.787483.5749
ENSG00000171861homo_sapiensENSP0000030608091.428683.8095chinchilla_lanigeraENSCLAP0000001243190.352982.8235
ENSG00000171861homo_sapiensENSP0000030608091.190582.619cervus_hanglu_yarkandensisENSCHYP0000001353490.973982.4228
ENSG00000171861homo_sapiensENSP0000030608092.142984.7619ictidomys_tridecemlineatusENSSTOP0000001470392.362884.9642
ENSG00000171861homo_sapiensENSP0000030608091.904885.7143otolemur_garnettiiENSOGAP0000000120991.904885.7143
ENSG00000171861homo_sapiensENSP0000030608093.809589.0476cebus_imitatorENSCCAP0000004062394.258489.4737
ENSG00000171861homo_sapiensENSP0000030608092.142985.2381urocitellus_parryiiENSUPAP0001002346492.362885.4415
ENSG00000171861homo_sapiensENSP0000030608092.142983.3333moschus_moschiferusENSMMSP0000001609891.706282.9384
ENSG00000171861homo_sapiensENSP0000030608095.952493.8095rhinopithecus_roxellanaENSRROP0000003651293.939491.8415
ENSG00000171861homo_sapiensENSP0000030608089.285781.4286mus_pahariMGP_PahariEiJ_P003509089.712981.8182
ENSG00000171861homo_sapiensENSP0000030608092.38186.6667propithecus_coquereliENSPCOP0000000428192.161586.4608
ENSG00000171861homo_sapiensENSP0000030608026.904810.9524caenorhabditis_elegansT14B4.1.19.224493.7551
ENSG00000171861homo_sapiensENSP0000030608050.476236.6667petromyzon_marinusENSPMAP0000000175761.988345.0292
ENSG00000171861homo_sapiensENSP0000030608056.428646.9048callorhinchus_miliiENSCMIP0000002209367.908356.447
ENSG00000171861homo_sapiensENSP0000030608071.190556.1905latimeria_chalumnaeENSLACP0000000808565.283851.5284
ENSG00000171861homo_sapiensENSP0000030608057.142941.4286lepisosteus_oculatusENSLOCP0000000739154.421839.4558
ENSG00000171861homo_sapiensENSP0000030608065.238148.8095esox_luciusENSELUP0000004080758.924744.086
ENSG00000171861homo_sapiensENSP0000030608062.857146.1905electrophorus_electricusENSEEEP0000000329561.252945.0116
ENSG00000171861homo_sapiensENSP0000030608067.38150.2381oncorhynchus_kisutchENSOKIP0000509889362.749446.7849
ENSG00000171861homo_sapiensENSP0000030608067.61950oncorhynchus_mykissENSOMYP0000008731560.425544.6809
ENSG00000171861homo_sapiensENSP0000030608063.571449.0476salmo_salarENSSSAP0000004466661.098447.1396
ENSG00000171861homo_sapiensENSP0000030608055.952442.381poecilia_reticulataENSPREP0000001467065.826349.8599
ENSG00000171861homo_sapiensENSP0000030608071.428653.0952xenopus_tropicalisENSXETP0000004860272.289253.7349
ENSG00000171861homo_sapiensENSP0000030608061.904851.4286crocodylus_porosusENSCPRP0000501807560.185250
ENSG00000171861homo_sapiensENSP0000030608058.333344.7619laticauda_laticaudataENSLLTP0000000139866.576151.087
ENSG00000171861homo_sapiensENSP0000030608038.571431.1905pseudonaja_textilisENSPTXP0000001090768.936255.7447
ENSG00000171861homo_sapiensENSP0000030608064.285751.9048gallus_gallusENSGALP0001004470166.339153.5627
ENSG00000171861homo_sapiensENSP0000030608062.38149.7619meleagris_gallopavoENSMGAP0000000705245.172436.0345
ENSG00000171861homo_sapiensENSP0000030608058.809547.619serinus_canariaENSSCAP0000001433263.010251.0204
ENSG00000171861homo_sapiensENSP0000030608064.761954.2857parus_majorENSPMJP0000002718266.666755.8824
ENSG00000171861homo_sapiensENSP0000030608034.761927.8571naja_najaENSNNAP0000000055267.592654.1667
ENSG00000171861homo_sapiensENSP0000030608060.476249.2857podarcis_muralisENSPMRP0000003716270.555657.5
ENSG00000171861homo_sapiensENSP0000030608059.761949.0476geospiza_fortisENSGFOP0000001717662.437851.2438
ENSG00000171861homo_sapiensENSP000003060806554.2857taeniopygia_guttataENSTGUP0000000745762.614752.2936
ENSG00000171861homo_sapiensENSP0000030608040.952435.7143pelodiscus_sinensisENSPSIP0000001597672.573863.2911
ENSG00000171861homo_sapiensENSP0000030608055.714346.1905struthio_camelus_australisENSSCUP0000000814565.181154.039
ENSG00000171861homo_sapiensENSP0000030608064.761951.6667anser_brachyrhynchusENSABRP0000001264967.830454.1147
ENSG00000171861homo_sapiensENSP0000030608064.761948.3333gasterosteus_aculeatusENSGACP0000001452460.579145.2116
ENSG00000171861homo_sapiensENSP0000030608055.714342.619sander_luciopercaENSSLUP0000003143255.847342.7208
ENSG00000171861homo_sapiensENSP0000030608018.333312.381hucho_huchoENSHHUP0000003117931.818221.4876
ENSG00000171861homo_sapiensENSP0000030608064.523847.8571betta_splendensENSBSLP0000002531857.782542.8571
ENSG00000171861homo_sapiensENSP0000030608063.809547.381pygocentrus_nattereriENSPNAP0000001361159.423544.1242
ENSG00000171861homo_sapiensENSP0000030608067.61950.7143oncorhynchus_tshawytschaENSOTSP0000507109461.605246.2039
ENSG00000171861homo_sapiensENSP0000030608065.238153.5714aquila_chrysaetos_chrysaetosENSACCP0002002341765.707453.9568
ENSG00000171861homo_sapiensENSP0000030608067.142950.2381cyprinodon_variegatusENSCVAP0000001592862.114546.4758
ENSG00000171861homo_sapiensENSP0000030608057.61944.7619denticeps_clupeoidesENSDCDP0000003156959.313746.0784
ENSG00000171861homo_sapiensENSP0000030608066.666750takifugu_rubripesENSTRUP0000000356461.269145.9519
ENSG00000171861homo_sapiensENSP0000030608037.142932.1429ficedula_albicollisENSFALP0000000604770.270360.8108
ENSG00000171861homo_sapiensENSP0000030608062.857150.7143coturnix_japonicaENSCJPP0000502047765.185252.5926
ENSG00000171861homo_sapiensENSP0000030608052.61939.7619sinocyclocheilus_grahamiENSSGRP0000009295965.384649.4083
ENSG00000171861homo_sapiensENSP0000030608065.476250.2381tetraodon_nigroviridisENSTNIP0000001931364.55449.5305
ENSG00000171861homo_sapiensENSP0000030608068.333351.4286paramormyrops_kingsleyaeENSPKIP0000003271561.324846.1538

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000451involved_in rRNA 2-O-methylation1TASHomo_sapiens(9606)Process
GO:0003723enables RNA binding1HDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005739located_in mitochondrion1IDAHomo_sapiens(9606)Component
GO:0005759located_in mitochondrial matrix1TASHomo_sapiens(9606)Component
GO:0042802enables identical protein binding1IPIHomo_sapiens(9606)Function
GO:0070039enables rRNA (guanosine-2-O-)-methyltransferase activity2EXP,IMPHomo_sapiens(9606)Function

Expression