Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases Cancer Disease
Drug N.A.
Main interacting RNAs snRNA
Moonlighting functions N.A.
Localizations Stress granucle
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000164610 Gene ID 6100 Accession 10288
Symbol RP9 Alias PAP1;PAP-1 Full Name RP9 pre-mRNA splicing factor
Status Confidence Length 14608 bases Strand Minus strand
Position 7 : 33094797 - 33109404 RNA binding domain N.A.
Summary The protein encoded by this gene can be bound and phosphorylated by the protooncogene PIM1 product, a serine/threonine protein kinase . This protein localizes in nuclear speckles containing the splicing factors, and has a role in pre-mRNA splicing. CBF1-interacting protein (CIR), a corepressor of CBF1, can also bind to this protein and effects alternative splicing. Mutations in this gene result in autosomal dominant retinitis pigmentosa-9. This gene has a pseudogene (GeneID: 441212), which is located in tandem array approximately 166 kb distal to this gene. [provided by RefSeq, Sep 2009]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RP9-206 ENST00000683432 1445 51aa ENSP00000508174
RP9-201 ENST00000297157 1135 221aa ENSP00000297157
RP9-203 ENST00000474370 3057 No protein -
RP9-205 ENST00000682645 4155 No protein -
RP9-204 ENST00000492391 2088 No protein -
RP9-202 ENST00000448915 629 166aa ENSP00000411577
RP9-207 ENST00000684207 1656 156aa ENSP00000506942

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000164610

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000164610homo_sapiensENSP0000029715798.1998.19nomascus_leucogenysENSNLEP0000001871498.1998.19
ENSG00000164610homo_sapiensENSP0000029715797.737697.7376pongo_abeliiENSPPYP0000001978497.737697.7376
ENSG00000164610homo_sapiensENSP0000029715799.547599.5475pan_troglodytesENSPTRP0000003258299.547599.5475
ENSG00000164610homo_sapiensENSP0000029715799.547599.5475gorilla_gorillaENSGGOP0000000745199.547599.5475
ENSG00000164610homo_sapiensENSP0000029715796.380194.5701dasypus_novemcinctusENSDNOP0000000797296.380194.5701
ENSG00000164610homo_sapiensENSP0000029715797.737696.3801callithrix_jacchusENSCJAP0000004381597.737696.3801
ENSG00000164610homo_sapiensENSP0000029715798.1998.19cercocebus_atysENSCATP0000001475598.1998.19
ENSG00000164610homo_sapiensENSP0000029715797.737697.7376macaca_fascicularisENSMFAP0000000357997.737697.7376
ENSG00000164610homo_sapiensENSP0000029715797.285197.2851macaca_mulattaENSMMUP0000000385297.285197.2851
ENSG00000164610homo_sapiensENSP0000029715797.737697.7376macaca_nemestrinaENSMNEP0000004277797.737697.7376
ENSG00000164610homo_sapiensENSP0000029715798.1998.19papio_anubisENSPANP0000000446998.1998.19
ENSG00000164610homo_sapiensENSP0000029715738.91437.5566tursiops_truncatusENSTTRP0000000330864.179161.9403
ENSG00000164610homo_sapiensENSP0000029715792.760289.1403mus_spretusMGP_SPRETEiJ_P009059196.244192.4883
ENSG00000164610homo_sapiensENSP0000029715764.253455.2036equus_asinusENSEASP0000504068963.392954.4643
ENSG00000164610homo_sapiensENSP0000029715795.022691.8552equus_asinusENSEASP0000505185694.594691.4414
ENSG00000164610homo_sapiensENSP0000029715780.090577.3756capra_hircusENSCHIP0000002550593.157990
ENSG00000164610homo_sapiensENSP0000029715796.380194.1176capra_hircusENSCHIP0000000856096.380194.1176
ENSG00000164610homo_sapiensENSP0000029715792.760290.9502panthera_leoENSPLOP0000000062797.61995.7143
ENSG00000164610homo_sapiensENSP0000029715796.380194.5701panthera_leoENSPLOP0000000085496.380194.5701
ENSG00000164610homo_sapiensENSP0000029715778.73377.8281ailuropoda_melanoleucaENSAMEP0000000696682.857181.9048
ENSG00000164610homo_sapiensENSP0000029715795.475193.2127bos_indicus_hybridENSBIXP0000500748864.329362.8049
ENSG00000164610homo_sapiensENSP0000029715761.99160.181oryctolagus_cuniculusENSOCUP0000002674391.946389.2617
ENSG00000164610homo_sapiensENSP0000029715797.737694.5701equus_caballusENSECAP0000001791285.375582.6087
ENSG00000164610homo_sapiensENSP0000029715795.475192.7602canis_lupus_familiarisENSCAFP0084503217557.181655.5556
ENSG00000164610homo_sapiensENSP0000029715796.380194.5701panthera_pardusENSPPRP0000002163196.380194.5701
ENSG00000164610homo_sapiensENSP0000029715797.285195.4751balaenoptera_musculusENSBMSP0001001570597.285195.4751
ENSG00000164610homo_sapiensENSP0000029715792.307783.7104cavia_porcellusENSCPOP0000002357292.727384.0909
ENSG00000164610homo_sapiensENSP0000029715781.44879.638bison_bison_bisonENSBBBP0000001043181.44879.638
ENSG00000164610homo_sapiensENSP0000029715765.158461.991monodon_monocerosENSMMNP000150110779691.3333
ENSG00000164610homo_sapiensENSP0000029715796.832695.0226monodon_monocerosENSMMNP0001501122696.832695.0226
ENSG00000164610homo_sapiensENSP0000029715795.927693.6652sus_scrofaENSSSCP0000005511195.927693.6652
ENSG00000164610homo_sapiensENSP0000029715788.687886.8778microcebus_murinusENSMICP0000001548792.018890.1408
ENSG00000164610homo_sapiensENSP0000029715792.307790.4977microcebus_murinusENSMICP0000004896392.727390.9091
ENSG00000164610homo_sapiensENSP0000029715780.54373.3032octodon_degusENSODEP000000125158981
ENSG00000164610homo_sapiensENSP0000029715796.380194.1176ovis_aries_rambouilletENSOARP0002000806863.017761.5385
ENSG00000164610homo_sapiensENSP0000029715747.058844.7964ochotona_princepsENSOPRP0000000119567.532564.2857
ENSG00000164610homo_sapiensENSP0000029715796.832695.0226delphinapterus_leucasENSDLEP0000001914796.832695.0226
ENSG00000164610homo_sapiensENSP0000029715765.158461.086delphinapterus_leucasENSDLEP000000192529690
ENSG00000164610homo_sapiensENSP0000029715797.737695.9276physeter_catodonENSPCTP0000500523197.737695.9276
ENSG00000164610homo_sapiensENSP0000029715792.760289.1403mus_caroliMGP_CAROLIEiJ_P008703596.244192.4883
ENSG00000164610homo_sapiensENSP0000029715792.760289.1403mus_musculusENSMUSP0000003476396.244192.4883
ENSG00000164610homo_sapiensENSP0000029715796.380194.5701mustela_putorius_furoENSMPUP0000000552096.380194.5701
ENSG00000164610homo_sapiensENSP0000029715760.18159.276mustela_putorius_furoENSMPUP0000000545291.724190.3448
ENSG00000164610homo_sapiensENSP0000029715797.737696.8326aotus_nancymaaeENSANAP0000001595997.737696.8326
ENSG00000164610homo_sapiensENSP0000029715798.1998.19chlorocebus_sabaeusENSCSAP0000001098098.1998.19
ENSG00000164610homo_sapiensENSP0000029715792.307789.5928mesocricetus_auratusENSMAUP0000000488696.226493.3962
ENSG00000164610homo_sapiensENSP0000029715797.737695.9276phocoena_sinusENSPSNP0000001124597.737695.9276
ENSG00000164610homo_sapiensENSP0000029715797.285194.5701camelus_dromedariusENSCDRP0000500471197.727395
ENSG00000164610homo_sapiensENSP0000029715792.307788.2353rattus_norvegicusENSRNOP0000008749996.682592.4171
ENSG00000164610homo_sapiensENSP0000029715793.212789.5928microtus_ochrogasterENSMOCP0000002344397.169893.3962
ENSG00000164610homo_sapiensENSP0000029715790.950287.7828peromyscus_maniculatus_bairdiiENSPEMP0000001210695.714392.381
ENSG00000164610homo_sapiensENSP0000029715792.760289.1403mus_spicilegusENSMSIP0000002944896.244192.4883
ENSG00000164610homo_sapiensENSP0000029715793.212790.0452cricetulus_griseus_chok1gshdENSCGRP0000101142697.169893.8679
ENSG00000164610homo_sapiensENSP0000029715795.927692.7602rhinolophus_ferrumequinumENSRFEP0001003014061.988359.9415
ENSG00000164610homo_sapiensENSP0000029715791.855286.4253heterocephalus_glaber_femaleENSHGLP0000005244168.581164.527
ENSG00000164610homo_sapiensENSP0000029715797.285197.2851rhinopithecus_bietiENSRBIP0000000492997.285197.2851
ENSG00000164610homo_sapiensENSP0000029715795.475192.3077canis_lupus_dingoENSCAFP0002000619295.475192.3077
ENSG00000164610homo_sapiensENSP0000029715796.832694.1176sciurus_vulgarisENSSVLP0000502218396.832694.1176
ENSG00000164610homo_sapiensENSP0000029715796.380194.1176nannospalax_galiliENSNGAP0000000050997.706495.4128
ENSG00000164610homo_sapiensENSP0000029715795.475192.7602bos_grunniensENSBGRP0000000878564.329362.5
ENSG00000164610homo_sapiensENSP0000029715795.927694.1176catagonus_wagneriENSCWAP0000000724195.927694.1176
ENSG00000164610homo_sapiensENSP0000029715795.022691.4027catagonus_wagneriENSCWAP0000000688995.022691.4027
ENSG00000164610homo_sapiensENSP0000029715796.380195.4751otolemur_garnettiiENSOGAP0000001890196.380195.4751
ENSG00000164610homo_sapiensENSP0000029715784.162983.2579cebus_imitatorENSCCAP0000003243297.894796.8421
ENSG00000164610homo_sapiensENSP0000029715771.040761.991urocitellus_parryiiENSUPAP0001001173075.845466.1836
ENSG00000164610homo_sapiensENSP0000029715795.927694.1176moschus_moschiferusENSMMSP0000001771095.927694.1176
ENSG00000164610homo_sapiensENSP0000029715786.425386.4253rhinopithecus_roxellanaENSRROP0000003868798.453698.4536
ENSG00000164610homo_sapiensENSP0000029715792.307788.6878mus_pahariMGP_PahariEiJ_P002268795.774792.0188
ENSG00000164610homo_sapiensENSP0000029715789.592888.2353propithecus_coquereliENSPCOP0000000371592.09390.6977

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003723enables RNA binding1HDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IEAHomo_sapiens(9606)Component
GO:0005785part_of signal recognition particle receptor complex1IEAHomo_sapiens(9606)Component
GO:0008380involved_in RNA splicing1TASHomo_sapiens(9606)Process
GO:0046872enables metal ion binding1IEAHomo_sapiens(9606)Function
GO:0050890involved_in cognition1IMPHomo_sapiens(9606)Process

Expression