RBPWorld - a comprehensive database of RNA Binding Proteins

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Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	Cancer
Drug	N.A.
Main interacting RNAs	rRNA
Moonlighting functions	Metabolic enzyme
Localizations	N.A.
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000163923	Gene ID	116832	Accession	17094
Symbol	RPL39L	Alias	L39-2;RPL39L1	Full Name	ribosomal protein L39 like
Status	Confidence	Length	59961 bases	Strand	Minus strand
Position	3 : 187120948 - 187180908	RNA binding domain	Ribosomal_L39
Summary	This gene encodes a protein sharing high sequence similarity with ribosomal protein L39. Although the name of this gene has been referred to as 'ribosomal protein L39' in the public databases, its official name is 'ribosomal protein L39-like'. It is not currently known whether the encoded protein is a functional ribosomal protein or whether it has evolved a function that is independent of the ribosome. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000296277	Ribosomal_L39	PF00832	7e-22	1
ENSP00000389356	Ribosomal_L39	PF00832	7e-22	1
ENSP00000397240	Ribosomal_L39	PF00832	7e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL39L-203	ENST00000455270	653	51aa	ENSP00000397240
RPL39L-201	ENST00000296277	729	51aa	ENSP00000296277
RPL39L-202	ENST00000433055	749	51aa	ENSP00000389356

Gene Model

Click here to download ENSG00000163923's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000163923's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000163923	homo_sapiens	ENSP00000355315	96.0784	92.1569	homo_sapiens	ENSP00000296277	96.0784	92.1569

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	nomascus_leucogenys	ENSNLEP00000048454	100	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	98.0392	98.0392	pan_paniscus	ENSPPAP00000000440	98.0392	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	98.0392	98.0392	pan_troglodytes	ENSPTRP00000040334	98.0392	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	gorilla_gorilla	ENSGGOP00000035742	100	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	86.2745	72.549	callithrix_jacchus	ENSCJAP00000079486	86.2745	72.549
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	macaca_nemestrina	ENSMNEP00000000516	100	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	98.0392	94.1176	papio_anubis	ENSPANP00000059227	96.1538	92.3077
ENSG00000163923	homo_sapiens	ENSP00000296277	84.3137	76.4706	panthera_pardus	ENSPPRP00000024697	84.3137	76.4706
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	chlorocebus_sabaeus	ENSCSAP00000018447	100	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	84.3137	76.4706	panthera_tigris_altaica	ENSPTIP00000000194	84.3137	76.4706
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	rhinopithecus_bieti	ENSRBIP00000011669	100	98.0392
ENSG00000163923	homo_sapiens	ENSP00000296277	100	98.0392	rhinopithecus_roxellana	ENSRROP00000004087	100	98.0392

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003735	enables structural constituent of ribosome	1	ISS	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0006412	involved_in translation	1	IEA	Homo_sapiens(9606)	Process
GO:0007283	involved_in spermatogenesis	2	IEP,ISS	Homo_sapiens(9606)	Process
GO:0022625	part_of cytosolic large ribosomal subunit	3	IBA,ISS,NAS	Homo_sapiens(9606)	Component

Expression