Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000155827 Gene ID 56254 Accession 10062
Symbol RNF20 Alias Full Name
Status Confidence Length 29492 bases Strand Plus strand
Position 9 : 101533853 - 101563344 RNA binding domain N.A.
Summary

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
26687599 Activation of ULK Kinase and Autophagy by GABARAP Trafficking from the Centrosome Is Regulated by WAC and GM130. Justin Joachim 2015-12-17 Molecular cell

Transcripts

Name Transcript ID bp Protein Translation ID
RNF20-202 ENST00000389120 3938 975aa ENSP00000373772
RNF20-201 ENST00000374819 596 181aa ENSP00000363952
RNF20-205 ENST00000479306 387 99aa ENSP00000419201
RNF20-206 ENST00000481046 601 No protein -
RNF20-203 ENST00000466817 784 145aa ENSP00000418924
RNF20-204 ENST00000478072 609 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000151part_of ubiquitin ligase complex1IDAHomo_sapiens(9606)Component
GO:0000209involved_in protein polyubiquitination1IDAHomo_sapiens(9606)Process
GO:0002039enables p53 binding1IDAHomo_sapiens(9606)Function
GO:0003682enables chromatin binding1IEAHomo_sapiens(9606)Function
GO:0003713enables transcription coactivator activity1IDAHomo_sapiens(9606)Function
GO:0003730enables mRNA 3-UTR binding1IDAHomo_sapiens(9606)Function
GO:0004842contributes_to ubiquitin-protein transferase activity2IDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634is_active_in nucleus2IBA,IDAHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm2IDA,TASHomo_sapiens(9606)Component
GO:0005730located_in nucleolus1IDAHomo_sapiens(9606)Component
GO:0006338involved_in chromatin remodeling1IEAHomo_sapiens(9606)Process
GO:0006355involved_in regulation of DNA-templated transcription1IMPHomo_sapiens(9606)Process
GO:0006511involved_in ubiquitin-dependent protein catabolic process1IMPHomo_sapiens(9606)Process
GO:0007346NOT involved_in regulation of mitotic cell cycle1IMPHomo_sapiens(9606)Process
GO:0030336involved_in negative regulation of cell migration1IDAHomo_sapiens(9606)Process
GO:0031625enables ubiquitin protein ligase binding1IPIHomo_sapiens(9606)Function
GO:0033503part_of HULC complex2IBA,IDAHomo_sapiens(9606)Component
GO:0042393enables histone binding1IDAHomo_sapiens(9606)Function
GO:0042802enables identical protein binding1IPIHomo_sapiens(9606)Function
GO:0045893involved_in positive regulation of DNA-templated transcription1IMPHomo_sapiens(9606)Process
GO:0045944involved_in positive regulation of transcription by RNA polymerase II1IDAHomo_sapiens(9606)Process
GO:0046872enables metal ion binding1IEAHomo_sapiens(9606)Function
GO:0061630enables ubiquitin protein ligase activity1IBAHomo_sapiens(9606)Function
GO:0071894involved_in histone H2B conserved C-terminal lysine ubiquitination1IBAHomo_sapiens(9606)Process
GO:0140850enables histone H2B C-terminal K residue ubiquitin ligase activity1IMPHomo_sapiens(9606)Function

Expression