Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases SARS-COV-2
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations Stress granucle
BulkPerturb-seq

Description

Ensembl ID ENSG00000144848 Gene ID 64422 Accession 20962
Symbol ATG3 Alias APG3;APG3L;hApg3;PC3-96;APG3-LIKE Full Name autophagy related 3
Status Confidence Length 29537 bases Strand Minus strand
Position 3 : 112532510 - 112562046 RNA binding domain N.A.
Summary This gene encodes a ubiquitin-like-conjugating enzyme and is a component of ubiquitination-like systems involved in autophagy, the process of degradation, turnover and recycling of cytoplasmic constituents in eukaryotic cells. This protein is known to play a role in regulation of autophagy during cell death. A pseudogene of this gene is located on chromosome 20. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
ATG3-201 ENST00000283290 1568 314aa ENSP00000283290
ATG3-202 ENST00000402314 3010 311aa ENSP00000385943
ATG3-207 ENST00000494571 2758 No protein -
ATG3-208 ENST00000495756 1455 No protein -
ATG3-204 ENST00000467275 559 No protein -
ATG3-209 ENST00000496423 737 74aa ENSP00000420259
ATG3-206 ENST00000492886 639 83aa ENSP00000420378
ATG3-203 ENST00000465980 560 No protein -
ATG3-205 ENST00000488910 681 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
93207Asthma2E-623829686

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000045involved_in autophagosome assembly2IBA,ISSHomo_sapiens(9606)Process
GO:0000407is_active_in phagophore assembly site1IBAHomo_sapiens(9606)Component
GO:0000422involved_in autophagy of mitochondrion1IBAHomo_sapiens(9606)Process
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005737is_active_in cytoplasm1IDAHomo_sapiens(9606)Component
GO:0005829is_active_in cytosol3IBA,IDA,TASHomo_sapiens(9606)Component
GO:0006612involved_in protein targeting to membrane1ISSHomo_sapiens(9606)Process
GO:0016567involved_in protein ubiquitination1IDAHomo_sapiens(9606)Process
GO:0019776enables Atg8-family ligase activity2IBA,ISSHomo_sapiens(9606)Function
GO:0019777enables Atg12 transferase activity1ISSHomo_sapiens(9606)Function
GO:0019787enables ubiquitin-like protein transferase activity1IDAHomo_sapiens(9606)Function
GO:0019899enables enzyme binding1IPIHomo_sapiens(9606)Function
GO:0043653involved_in mitochondrial fragmentation involved in apoptotic process1ISSHomo_sapiens(9606)Process
GO:0044804involved_in nucleophagy1IBAHomo_sapiens(9606)Process
GO:0050765involved_in negative regulation of phagocytosis1IEAHomo_sapiens(9606)Process
GO:1902017involved_in regulation of cilium assembly1ISSHomo_sapiens(9606)Process

Expression