Functions and Diseases

RBP Type Canonical_RBPs
Diseases Cancer
Drug N.A.
Main interacting RNAs ncRNA
Moonlighting functions N.A.
Localizations N.A.
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000137628 Gene ID 55601 Accession 25942
Symbol DDX60 Alias Full Name
Status Confidence Length 102593 bases Strand Minus strand
Position 4 : 168216291 - 168318883 RNA binding domain ResIII , DEAD
Summary

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000506501 DEAD PF00270 6.3e-17 1
ENSP00000506501 ResIII PF04851 1.8e-12 2
ENSP00000505292 DEAD PF00270 8.8e-17 1
ENSP00000505292 ResIII PF04851 3.5e-12 2
ENSP00000377344 DEAD PF00270 9e-17 1
ENSP00000377344 ResIII PF04851 3.6e-12 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
DDX60-207 ENST00000679510 6267 1392aa ENSP00000506501
DDX60-201 ENST00000393743 6015 1712aa ENSP00000377344
DDX60-209 ENST00000680771 6718 1682aa ENSP00000505292
DDX60-204 ENST00000511317 4877 191aa ENSP00000422669
DDX60-203 ENST00000507815 548 No protein -
DDX60-202 ENST00000505393 745 No protein -
DDX60-210 ENST00000680917 6641 249aa ENSP00000505790
DDX60-205 ENST00000513997 542 104aa ENSP00000423678
DDX60-208 ENST00000679744 6135 No protein -
DDX60-211 ENST00000680998 2442 No protein -
DDX60-212 ENST00000681832 1253 No protein -
DDX60-206 ENST00000514995 537 119aa ENSP00000423647

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000137628homo_sapiensENSP0000026423312.81856.67954homo_sapiensENSP0000037734419.392510.1051
ENSG00000137628homo_sapiensENSP0000036454327.287315.008homo_sapiensENSP0000037734419.859810.9229
ENSG00000137628homo_sapiensENSP0000050787279.132565.7093homo_sapiensENSP0000037734478.855165.479
ENSG00000137628homo_sapiensENSP0000031712317.6038.42697homo_sapiensENSP0000037734421.962610.514
ENSG00000137628homo_sapiensENSP0000035945422.926811.2195homo_sapiensENSP0000037734419.21739.40421
ENSG00000137628homo_sapiensENSP0000029548832.425116.9846homo_sapiensENSP0000037734420.852810.9229
ENSG00000137628homo_sapiensENSP0000035815917.75668.58311homo_sapiensENSP0000037734422.838811.0397
ENSG00000137628homo_sapiensENSP0000023064026.967414.3954homo_sapiensENSP0000037734416.41368.76168

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000137628homo_sapiensENSP0000037734497.546796.2033nomascus_leucogenysENSNLEP0000000798398.235396.8824
ENSG00000137628homo_sapiensENSP0000037734469.334168.8668pan_paniscusENSPPAP0000003484398.916798.25
ENSG00000137628homo_sapiensENSP0000037734498.422997.3131pongo_abeliiENSPPYP0000001696698.422997.3131
ENSG00000137628homo_sapiensENSP0000037734499.474399.1238pan_troglodytesENSPTRP0000002845699.474399.1238
ENSG00000137628homo_sapiensENSP0000037734493.574893.1075gorilla_gorillaENSGGOP0000001250999.503199.0062
ENSG00000137628homo_sapiensENSP0000037734475.350561.7407ornithorhynchus_anatinusENSOANP0000005322375.438661.8129
ENSG00000137628homo_sapiensENSP0000037734478.154263.3178sarcophilus_harrisiiENSSHAP0000001910578.337263.466
ENSG00000137628homo_sapiensENSP0000037734433.820126.8692notamacropus_eugeniiENSMEUP0000000476641.357132.8571
ENSG00000137628homo_sapiensENSP0000037734467.873859.1706choloepus_hoffmanniENSCHOP0000000943475.552765.8648
ENSG00000137628homo_sapiensENSP0000037734487.577.979dasypus_novemcinctusENSDNOP0000000656887.577.979
ENSG00000137628homo_sapiensENSP0000037734470.502360.4556erinaceus_europaeusENSEEUP0000000943171.125560.99
ENSG00000137628homo_sapiensENSP0000037734495.852891.2383callithrix_jacchusENSCJAP0000000865794.582190.0288
ENSG00000137628homo_sapiensENSP0000037734498.247796.1449cercocebus_atysENSCATP0000003146598.247796.1449
ENSG00000137628homo_sapiensENSP0000037734498.247796.3201macaca_fascicularisENSMFAP0000001147398.247796.3201
ENSG00000137628homo_sapiensENSP0000037734498.422996.4369macaca_mulattaENSMMUP0000007585598.422996.4369
ENSG00000137628homo_sapiensENSP0000037734495.151993.0491macaca_nemestrinaENSMNEP0000001255196.333594.2046
ENSG00000137628homo_sapiensENSP0000037734413.609813.3178papio_anubisENSPANP0000005365796.28194.2149
ENSG00000137628homo_sapiensENSP0000037734498.422996.5537papio_anubisENSPANP0000001524998.422996.5537
ENSG00000137628homo_sapiensENSP0000037734496.553794.5093mandrillus_leucophaeusENSMLEP0000001349397.984695.9099
ENSG00000137628homo_sapiensENSP0000037734475.876266.1215tursiops_truncatusENSTTRP0000001529975.34865.6613
ENSG00000137628homo_sapiensENSP0000037734487.733677.979vulpes_vulpesENSVVUP0000003311887.939178.1616
ENSG00000137628homo_sapiensENSP0000037734489.193980.3738equus_asinusENSEASP0000503205288.98680.1865
ENSG00000137628homo_sapiensENSP0000037734412.149510.5724loxodonta_africanaENSLAFP0000002889984.552873.5772
ENSG00000137628homo_sapiensENSP0000037734428.504724.6495loxodonta_africanaENSLAFP0000001205683.70572.3842
ENSG00000137628homo_sapiensENSP0000037734420.852818.4579loxodonta_africanaENSLAFP0000002537791.071480.6122
ENSG00000137628homo_sapiensENSP0000037734418.341115.8294loxodonta_africanaENSLAFP0000000259080.927869.8454
ENSG00000137628homo_sapiensENSP0000037734488.49379.8481panthera_leoENSPLOP0000000254188.752280.082
ENSG00000137628homo_sapiensENSP0000037734488.551479.965ailuropoda_melanoleucaENSAMEP0000001415388.65580.0585
ENSG00000137628homo_sapiensENSP0000037734487.383278.0958oryctolagus_cuniculusENSOCUP0000000550487.485478.1871
ENSG00000137628homo_sapiensENSP0000037734488.960379.8481equus_caballusENSECAP0000006816788.752979.662
ENSG00000137628homo_sapiensENSP0000037734488.200978.4463canis_lupus_familiarisENSCAFP0084501192388.407578.63
ENSG00000137628homo_sapiensENSP0000037734488.434679.6729panthera_pardusENSPPRP0000001721888.693679.9063
ENSG00000137628homo_sapiensENSP0000037734488.200979.0304marmota_marmota_marmotaENSMMMP0000001694688.56379.3548
ENSG00000137628homo_sapiensENSP0000037734485.864576.986balaenoptera_musculusENSBMSP0001001553887.292278.266
ENSG00000137628homo_sapiensENSP0000037734483.294473.1893cavia_porcellusENSCPOP0000000748482.810772.7642
ENSG00000137628homo_sapiensENSP0000037734488.376279.6145felis_catusENSFCAP0000001000588.63579.8477
ENSG00000137628homo_sapiensENSP000003773449.170568.29439ursus_americanusENSUAMP0000001113885.792477.5956
ENSG00000137628homo_sapiensENSP0000037734477.570162.2079monodelphis_domesticaENSMODP0000000321277.706362.3171
ENSG00000137628homo_sapiensENSP0000037734478.621562.9673monodelphis_domesticaENSMODP0000005239678.667463.0041
ENSG00000137628homo_sapiensENSP0000037734482.009371.8458monodon_monocerosENSMMNP0001502079386.475.6923
ENSG00000137628homo_sapiensENSP0000037734487.149577.6869sus_scrofaENSSSCP0000006682787.558778.0516
ENSG00000137628homo_sapiensENSP0000037734487.850577.8622microcebus_murinusENSMICP0000001238088.522778.4579
ENSG00000137628homo_sapiensENSP0000037734420.327118.2243jaculus_jaculusENSJJAP0000000034889.002679.7954
ENSG00000137628homo_sapiensENSP0000037734488.259379.7313ursus_maritimusENSUMAP0000002783087.951179.4529
ENSG00000137628homo_sapiensENSP0000037734468.341160.4556ochotona_princepsENSOPRP0000001082969.642961.6071
ENSG00000137628homo_sapiensENSP0000037734485.630875.5841delphinapterus_leucasENSDLEP0000002988087.00376.7952
ENSG00000137628homo_sapiensENSP0000037734486.740776.7523physeter_catodonENSPCTP0000500535987.250377.2033
ENSG00000137628homo_sapiensENSP0000037734485.572475.1168mus_caroliMGP_CAROLIEiJ_P008454185.622475.1607
ENSG00000137628homo_sapiensENSP0000037734485.280474.8248mus_musculusENSMUSP0000009119785.330274.8685
ENSG00000137628homo_sapiensENSP0000037734476.168264.1939dipodomys_ordiiENSDORP0000000689583.536270.4036
ENSG00000137628homo_sapiensENSP0000037734488.960380.8411mustela_putorius_furoENSMPUP0000000765489.116480.983
ENSG00000137628homo_sapiensENSP0000037734494.859890.7126aotus_nancymaaeENSANAP0000002635195.417291.2456
ENSG00000137628homo_sapiensENSP0000037734493.165988.0257saimiri_boliviensis_boliviensisENSSBOP0000001633394.658889.4362
ENSG00000137628homo_sapiensENSP0000037734466.004758.4696vicugna_pacosENSVPAP0000000246466.159258.6066
ENSG00000137628homo_sapiensENSP0000037734497.897296.028chlorocebus_sabaeusENSCSAP0000001488897.897296.028
ENSG00000137628homo_sapiensENSP0000037734461.098154.8481tupaia_belangeriENSTBEP0000000029861.856955.5293
ENSG00000137628homo_sapiensENSP0000037734485.572474.3575mesocricetus_auratusENSMAUP0000001796885.772874.5316
ENSG00000137628homo_sapiensENSP0000037734486.156575.993phocoena_sinusENSPSNP0000002630586.815876.5745
ENSG00000137628homo_sapiensENSP0000037734452.453347.8972carlito_syrichtaENSTSYP0000001060488.822981.1078
ENSG00000137628homo_sapiensENSP0000037734488.434679.7313panthera_tigris_altaicaENSPTIP0000002671588.693679.9649
ENSG00000137628homo_sapiensENSP0000037734484.579473.5981rattus_norvegicusENSRNOP0000008707484.777573.7705
ENSG00000137628homo_sapiensENSP0000037734484.579473.5397rattus_norvegicusENSRNOP0000007405784.727973.6688
ENSG00000137628homo_sapiensENSP0000037734481.834170.035microtus_ochrogasterENSMOCP0000000858284.346872.1854
ENSG00000137628homo_sapiensENSP0000037734484.404272.4883microtus_ochrogasterENSMOCP0000000779884.900172.9142
ENSG00000137628homo_sapiensENSP0000037734419.275717.0561microtus_ochrogasterENSMOCP0000001075584.39974.6803
ENSG00000137628homo_sapiensENSP0000037734464.48653.7383sorex_araneusENSSARP0000000228166.828155.6901
ENSG00000137628homo_sapiensENSP0000037734481.834171.729peromyscus_maniculatus_bairdiiENSPEMP0000002811584.703874.2443
ENSG00000137628homo_sapiensENSP0000037734485.864575.1752mus_spicilegusENSMSIP0000002930685.914775.2192
ENSG00000137628homo_sapiensENSP0000037734485.455674.4159cricetulus_griseus_chok1gshdENSCGRP0000101851585.455674.4159
ENSG00000137628homo_sapiensENSP0000037734484.345875.8178pteropus_vampyrusENSPVAP0000001077884.100275.597
ENSG00000137628homo_sapiensENSP0000037734488.668279.5561myotis_lucifugusENSMLUP0000000670688.513179.4169
ENSG00000137628homo_sapiensENSP0000037734468.925252.8621rhinolophus_ferrumequinumENSRFEP0001001321965.337850.1107
ENSG00000137628homo_sapiensENSP0000037734488.843580.4907neovison_visonENSNVIP0000001464288.999480.632
ENSG00000137628homo_sapiensENSP0000037734482.593572.2547heterocephalus_glaber_femaleENSHGLP0000005761684.82374.2052
ENSG00000137628homo_sapiensENSP0000037734486.740775.5841heterocephalus_glaber_femaleENSHGLP0000001921686.892975.7168
ENSG00000137628homo_sapiensENSP0000037734492.289790.3622rhinopithecus_bietiENSRBIP0000002086598.014995.9677
ENSG00000137628homo_sapiensENSP0000037734419.684618.1075canis_lupus_dingoENSCAFP0002000398486.410379.4872
ENSG00000137628homo_sapiensENSP0000037734420.502318.6332sciurus_vulgarisENSSVLP0000500189389.769881.5857
ENSG00000137628homo_sapiensENSP0000037734465.829457.4182procavia_capensisENSPCAP0000000261467.932559.2526
ENSG00000137628homo_sapiensENSP0000037734420.151917.9907nannospalax_galiliENSNGAP0000001757588.235378.7724
ENSG00000137628homo_sapiensENSP0000037734485.046774.2991chinchilla_lanigeraENSCLAP0000002235384.848574.1259
ENSG00000137628homo_sapiensENSP0000037734486.448677.1028catagonus_wagneriENSCWAP0000001796386.803577.4194
ENSG00000137628homo_sapiensENSP0000037734476.460368.1659ictidomys_tridecemlineatusENSSTOP0000002303689.351579.6587
ENSG00000137628homo_sapiensENSP0000037734495.385590.771cebus_imitatorENSCCAP0000003335095.329890.718
ENSG00000137628homo_sapiensENSP0000037734498.01496.028rhinopithecus_roxellanaENSRROP0000001295098.01496.028
ENSG00000137628homo_sapiensENSP0000037734484.813176.0514propithecus_coquereliENSPCOP0000000275487.417278.3865
ENSG00000137628homo_sapiensENSP0000037734466.588848.3645callorhinchus_miliiENSCMIP0000000492967.455648.9941
ENSG00000137628homo_sapiensENSP0000037734451.693940.3037latimeria_chalumnaeENSLACP0000001978870.856755.2442
ENSG00000137628homo_sapiensENSP000003773441.343460.525701oncorhynchus_mykissENSOMYP0000000035922.11548.65385
ENSG00000137628homo_sapiensENSP0000037734467.75750.4673xenopus_tropicalisENSXETP0000010891267.013349.9133
ENSG00000137628homo_sapiensENSP0000037734474.357559.3458chrysemys_picta_belliiENSCPBP0000004003072.701358.024
ENSG00000137628homo_sapiensENSP0000037734455.841145.2103sphenodon_punctatusENSSPUP0000002513372.2658.5034
ENSG00000137628homo_sapiensENSP0000037734467.46553.6799crocodylus_porosusENSCPRP0000501559072.052457.33
ENSG00000137628homo_sapiensENSP0000037734461.448647.9556anas_platyrhynchos_platyrhynchosENSAPLP0000000676769.668954.3709
ENSG00000137628homo_sapiensENSP0000037734471.845854.0888gallus_gallusENSGALP0001001078566.271649.8922
ENSG00000137628homo_sapiensENSP0000037734470.151953.4463meleagris_gallopavoENSMGAP0000000202467.020151.0603
ENSG00000137628homo_sapiensENSP0000037734471.845857.5935anolis_carolinensisENSACAP0000001579470.366156.4073
ENSG00000137628homo_sapiensENSP0000037734469.626256.1916podarcis_muralisENSPMRP0000001792673.625759.4194
ENSG00000137628homo_sapiensENSP0000037734418.808416.0631salvator_merianaeENSSMRP0000000351782.989770.8763
ENSG00000137628homo_sapiensENSP0000037734475.175260.1051pelodiscus_sinensisENSPSIP0000000460175.307260.2107
ENSG00000137628homo_sapiensENSP0000037734418.925216.2967gopherus_evgoodeiENSGEVP0000500899683.076971.5385
ENSG00000137628homo_sapiensENSP0000037734471.787455.1402struthio_camelus_australisENSSCUP0000001837167.305651.6977
ENSG00000137628homo_sapiensENSP0000037734462.266448.5981anser_brachyrhynchusENSABRP0000001936371.304355.6522
ENSG00000137628homo_sapiensENSP0000037734413.551410.7477strigops_habroptilaENSSHBP0000501024973.650858.4127
ENSG00000137628homo_sapiensENSP0000037734473.422958.8201terrapene_carolina_triunguisENSTMTP0000000477075.314660.3355
ENSG00000137628homo_sapiensENSP000003773441.693930.584112pygocentrus_nattereriENSPNAP0000002989726.12619.00901
ENSG00000137628homo_sapiensENSP0000037734415.24537.06776saccharomyces_cerevisiaeYGL251C21.988210.1938
ENSG00000137628homo_sapiensENSP0000037734467.114551.6355aquila_chrysaetos_chrysaetosENSACCP0002000180972.537955.8081
ENSG00000137628homo_sapiensENSP0000037734471.436954.264coturnix_japonicaENSCJPP0000500068166.940350.8484
ENSG00000137628homo_sapiensENSP000003773445.257012.39486poecilia_latipinnaENSPLAP0000000067627.950312.7329
ENSG00000137628homo_sapiensENSP000003773444.264022.04439sinocyclocheilus_grahamiENSSGRP0000007553522.461510.7692
ENSG00000137628homo_sapiensENSP0000037734452.803737.3832leptobrachium_leishanenseENSLLEP0000001558261.538543.5671
ENSG00000137628homo_sapiensENSP0000037734454.906539.5444leptobrachium_leishanenseENSLLEP0000004880862.087244.716
ENSG00000137628homo_sapiensENSP0000037734411.79918.3528leptobrachium_leishanenseENSLLEP0000002695559.411842.0588
ENSG00000137628homo_sapiensENSP0000037734410.10517.47664leptobrachium_leishanenseENSLLEP0000001874863.3746.8864

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003690enables double-stranded DNA binding1IDAHomo_sapiens(9606)Function
GO:0003724enables RNA helicase activity1IEAHomo_sapiens(9606)Function
GO:0003725enables double-stranded RNA binding2IBA,IDAHomo_sapiens(9606)Function
GO:0003727enables single-stranded RNA binding2IBA,IDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005524enables ATP binding1IEAHomo_sapiens(9606)Function
GO:0005737is_active_in cytoplasm2IBA,IDAHomo_sapiens(9606)Component
GO:0005829located_in cytosol1IDAHomo_sapiens(9606)Component
GO:0009615involved_in response to virus1IDAHomo_sapiens(9606)Process
GO:0016887enables ATP hydrolysis activity1IEAHomo_sapiens(9606)Function
GO:0045087involved_in innate immune response1IEAHomo_sapiens(9606)Process
GO:0045111located_in intermediate filament cytoskeleton1IDAHomo_sapiens(9606)Component
GO:0051607involved_in defense response to virus1IBAHomo_sapiens(9606)Process
GO:1900245involved_in positive regulation of MDA-5 signaling pathway1IMPHomo_sapiens(9606)Process
GO:1900246involved_in positive regulation of RIG-I signaling pathway1IMPHomo_sapiens(9606)Process

Expression