Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases Disease
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000125450 Gene ID 79902 Accession 8734
Symbol NUP85 Alias Nup75;FROUNT;NPHS17 Full Name nucleoporin 85
Status Confidence Length 30100 bases Strand Plus strand
Position 17 : 75205659 - 75235758 RNA binding domain N.A.
Summary This gene encodes a protein component of the Nup107-160 subunit of the nuclear pore complex. Nuclear pore complexes are embedded in the nuclear envelope and promote bidirectional transport of macromolecules between the cytoplasm and nucleus. The encoded protein can also bind to the C-terminus of chemokine (C-C motif) receptor 2 (CCR2) and promote chemotaxis of monocytes, thereby participating in the inflammatory response. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
NUP85-222 ENST00000583569 553 120aa ENSP00000462487
NUP85-201 ENST00000245544 2133 656aa ENSP00000245544
NUP85-224 ENST00000583948 1197 No protein -
NUP85-219 ENST00000582833 453 No protein -
NUP85-211 ENST00000579324 2010 544aa ENSP00000463382
NUP85-202 ENST00000449421 1287 No protein -
NUP85-204 ENST00000577208 572 No protein -
NUP85-221 ENST00000583548 562 No protein -
NUP85-210 ENST00000579298 1890 611aa ENSP00000462749
NUP85-216 ENST00000581104 2233 169aa ENSP00000461919
NUP85-208 ENST00000578830 922 100aa ENSP00000462920
NUP85-223 ENST00000583877 575 191aa ENSP00000463715
NUP85-205 ENST00000577561 524 No protein -
NUP85-212 ENST00000579557 817 272aa ENSP00000463496
NUP85-206 ENST00000577645 869 No protein -
NUP85-220 ENST00000583070 907 302aa ENSP00000463542
NUP85-215 ENST00000580879 583 19aa ENSP00000463377
NUP85-217 ENST00000581335 566 No protein -
NUP85-203 ENST00000540768 1926 259aa ENSP00000445855
NUP85-218 ENST00000582681 595 No protein -
NUP85-207 ENST00000578294 385 No protein -
NUP85-214 ENST00000579900 528 114aa ENSP00000463437
NUP85-209 ENST00000578987 388 46aa ENSP00000464544
NUP85-213 ENST00000579838 373 98aa ENSP00000462364
NUP85-225 ENST00000584155 300 18aa ENSP00000464433

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
24904Waist Circumference9.2210000E-005-
24954Waist Circumference9.2210000E-005-

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000776colocalizes_with kinetochore1IDAHomo_sapiens(9606)Component
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005635located_in nuclear envelope2IDA,TASHomo_sapiens(9606)Component
GO:0005643part_of nuclear pore1NASHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1IDAHomo_sapiens(9606)Component
GO:0005819located_in spindle1IEAHomo_sapiens(9606)Component
GO:0005829located_in cytosol2IDA,TASHomo_sapiens(9606)Component
GO:0006406involved_in mRNA export from nucleus1IBAHomo_sapiens(9606)Process
GO:0006606involved_in protein import into nucleus1IBAHomo_sapiens(9606)Process
GO:0006913involved_in nucleocytoplasmic transport1NASHomo_sapiens(9606)Process
GO:0016020located_in membrane1HDAHomo_sapiens(9606)Component
GO:0017056enables structural constituent of nuclear pore1IBAHomo_sapiens(9606)Function
GO:0030032involved_in lamellipodium assembly1IEAHomo_sapiens(9606)Process
GO:0031080part_of nuclear pore outer ring3IBA,IDA,NASHomo_sapiens(9606)Component
GO:0031965located_in nuclear membrane1IEAHomo_sapiens(9606)Component
GO:0045893involved_in positive regulation of DNA-templated transcription1IBAHomo_sapiens(9606)Process
GO:0048246involved_in macrophage chemotaxis1IEAHomo_sapiens(9606)Process
GO:0072006involved_in nephron development1IMPHomo_sapiens(9606)Process

Expression