Functions and Diseases

RBP Type Canonical_RBPs
Diseases Disease
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000124713 Gene ID 27232 Accession 4415
Symbol GNMT Alias HEL-S-182mP Full Name glycine N-methyltransferase
Status Confidence Length 3127 bases Strand Plus strand
Position 6 : 42960754 - 42963880 RNA binding domain Methyltransf_31
Summary The protein encoded by this gene is an enzyme that catalyzes the conversion of S-adenosyl-L-methionine (along with glycine) to S-adenosyl-L-homocysteine and sarcosine. This protein is found in the cytoplasm and acts as a homotetramer. Defects in this gene are a cause of GNMT deficiency (hypermethioninemia). Alternative splicing results in multiple transcript variants. Naturally occurring readthrough transcription occurs between the upstream CNPY3 (canopy FGF signaling regulator 3) gene and this gene and is represented with GeneID:107080644. [provided by RefSeq, Jan 2016]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000361894 Methyltransf_31 PF13847 3.6e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
30115977 MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma. Jung-Hsien Hung 2018-08-16 Scientific reports

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005542enables folic acid binding1IEAHomo_sapiens(9606)Function
GO:0005829is_active_in cytosol3IBA,IDA,TASHomo_sapiens(9606)Component
GO:0005977involved_in glycogen metabolic process1IEAHomo_sapiens(9606)Process
GO:0006111involved_in regulation of gluconeogenesis1IBAHomo_sapiens(9606)Process
GO:0006555involved_in methionine metabolic process1IEAHomo_sapiens(9606)Process
GO:0006730involved_in one-carbon metabolic process1IBAHomo_sapiens(9606)Process
GO:0016594enables glycine binding2IBA,IDAHomo_sapiens(9606)Function
GO:0017174enables glycine N-methyltransferase activity2IBA,IDAHomo_sapiens(9606)Function
GO:0032259involved_in methylation1IEAHomo_sapiens(9606)Process
GO:0036211involved_in protein modification process1NASHomo_sapiens(9606)Process
GO:0042802enables identical protein binding2IBA,IPIHomo_sapiens(9606)Function
GO:0046498involved_in S-adenosylhomocysteine metabolic process1IBAHomo_sapiens(9606)Process
GO:0046500involved_in S-adenosylmethionine metabolic process2IBA,IDAHomo_sapiens(9606)Process
GO:0051289involved_in protein homotetramerization2IBA,IPIHomo_sapiens(9606)Process
GO:1901052involved_in sarcosine metabolic process1IBAHomo_sapiens(9606)Process
GO:1904047enables S-adenosyl-L-methionine binding1IBAHomo_sapiens(9606)Function

Expression