Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000124641 Gene ID 9477 Accession 16840
Symbol MED20 Alias SRB2;TRFP;PRO0213 Full Name mediator complex subunit 20
Status Confidence Length 15786 bases Strand Minus strand
Position 6 : 41905354 - 41921139 RNA binding domain Med20
Summary This gene encodes a component of the mediator complex (also known as TRAP, SMCC, DRIP, or ARC), a transcriptional coactivator complex thought to be required for the expression of almost all genes. The mediator complex is recruited by transcriptional activators or nuclear receptors to induce gene expression, by interacting with RNA polymerase II and promoting the formation of a transcriptional pre-initiation complex. A mutation in this gene has been associated with a novel infantile-onset neurodegenerative movement disorder. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2015]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000265350 Med20 PF08612 4.5e-48 1
ENSP00000386668 Med20 PF08612 2.5e-36 1
ENSP00000377795 Med20 PF08612 3.3e-36 1
ENSP00000386816 Med20 PF08612 1.3e-23 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
25416Waist-Hip Ratio4.2310000E-005-

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003713enables transcription coactivator activity1IBAHomo_sapiens(9606)Function
GO:0003899enables DNA-directed 5-3 RNA polymerase activity1NASHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1TASHomo_sapiens(9606)Component
GO:0006351involved_in DNA-templated transcription1NASHomo_sapiens(9606)Process
GO:0006357involved_in regulation of transcription by RNA polymerase II1IBAHomo_sapiens(9606)Process
GO:0006366involved_in transcription by RNA polymerase II1TASHomo_sapiens(9606)Process
GO:0016592part_of mediator complex2IBA,NASHomo_sapiens(9606)Component
GO:0032968involved_in positive regulation of transcription elongation by RNA polymerase II1NASHomo_sapiens(9606)Process
GO:0035914involved_in skeletal muscle cell differentiation1IEAHomo_sapiens(9606)Process
GO:0051123involved_in RNA polymerase II preinitiation complex assembly1NASHomo_sapiens(9606)Process
GO:0060261involved_in positive regulation of transcription initiation by RNA polymerase II1NASHomo_sapiens(9606)Process
GO:0070847part_of core mediator complex1IPIHomo_sapiens(9606)Component

Expression