RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Non-canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq

Description

Ensembl ID	ENSG00000117602	Gene ID	11123	Accession	3042
Symbol	RCAN3	Alias	RCN3;MCIP3;hRCN3;DSCR1L2	Full Name	RCAN family member 3
Status	Confidence	Length	38690 bases	Strand	Plus strand
Position	1 : 24502351 - 24541040	RNA binding domain	N.A.
Summary	Enables phosphatase binding activity and troponin I binding activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal
34529546	A systematic review and meta-analysis of imaging genetics studies of specific reading disorder.	Tina Thomas	2021-05-01	Cognitive neuropsychology

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RCAN3-207	ENST00000538532	2421	241aa	ENSP00000445401
RCAN3-209	ENST00000618490	2386	116aa	ENSP00000484519
RCAN3-202	ENST00000374395	6863	241aa	ENSP00000363516
RCAN3-205	ENST00000436717	2574	183aa	ENSP00000414447
RCAN3-208	ENST00000616511	2527	116aa	ENSP00000478174
RCAN3-204	ENST00000425530	997	231aa	ENSP00000409540
RCAN3-203	ENST00000412742	667	173aa	ENSP00000391912
RCAN3-210	ENST00000630217	658	183aa	ENSP00000486836
RCAN3-201	ENST00000374393	382	115aa	ENSP00000363514
RCAN3-206	ENST00000482807	497	108aa	ENSP00000437338

Gene Model

Click here to download ENSG00000117602's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000117602's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003723	enables RNA binding	1	TAS	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0005634	is_active_in nucleus	1	IBA	Homo_sapiens(9606)	Component
GO:0005737	is_active_in cytoplasm	1	IBA	Homo_sapiens(9606)	Component
GO:0005829	located_in cytosol	1	TAS	Homo_sapiens(9606)	Component
GO:0008597	enables calcium-dependent protein serine/threonine phosphatase regulator activity	1	IBA	Homo_sapiens(9606)	Function
GO:0009653	involved_in anatomical structure morphogenesis	1	TAS	Homo_sapiens(9606)	Process
GO:0019722	involved_in calcium-mediated signaling	1	IBA	Homo_sapiens(9606)	Process
GO:0019902	enables phosphatase binding	1	IPI	Homo_sapiens(9606)	Function
GO:0031013	enables troponin I binding	1	IPI	Homo_sapiens(9606)	Function

Expression