Functions and Diseases

RBP Type Canonical_RBPs
Diseases CancerSARS-COV-2
Drug N.A.
Main interacting RNAs rRNA
Moonlighting functions N.A.
Localizations Stress granucleP-bodyNucleoli
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000107625 Gene ID 79009 Accession 17906
Symbol DDX50 Alias GU2;GUB;mcdrh;RH-II/GuB Full Name DExD-box helicase 50
Status Confidence Length 45562 bases Strand Plus strand
Position 10 : 68901286 - 68946847 RNA binding domain ResIII , DEAD , GUCT
Summary DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box enzyme that may be involved in ribosomal RNA synthesis or processing. This gene and DDX21, also called RH-II/GuA, have similar genomic structures and are in tandem orientation on chromosome 10, suggesting that the two genes arose by gene duplication in evolution. This gene has pseudogenes on chromosomes 2, 3 and 4. Alternative splicing of this gene generates multiple transcript variants, but the full length nature of all the other variants but one has not been defined. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000362687 DEAD PF00270 7.5e-47 1
ENSP00000362687 ResIII PF04851 1.6e-09 2
ENSP00000362687 GUCT PF08152 7.4e-27 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
35215908 DDX50 Is a Viral Restriction Factor That Enhances IRF3 Activation. A Mitchell Pallett 2022-02-03 Viruses
33692367 easyCLIP analysis of RNA-protein interactions incorporating absolute quantification. F Douglas Porter 2021-03-10 Nature communications

Transcripts

Name Transcript ID bp Protein Translation ID
DDX50-205 ENST00000483593 1067 39aa ENSP00000474785
DDX50-201 ENST00000373585 2501 737aa ENSP00000362687
DDX50-204 ENST00000471475 888 51aa ENSP00000474314
DDX50-202 ENST00000460470 531 No protein -
DDX50-203 ENST00000466265 744 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
77646Depressive Disorder9E-620800221

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000107625homo_sapiensENSP0000037947550.233625.7009homo_sapiensENSP0000036268729.172314.9254
ENSG00000107625homo_sapiensENSP0000038553633.470519.0672homo_sapiensENSP0000036268733.107218.8602
ENSG00000107625homo_sapiensENSP0000026323938.955222.0896homo_sapiensENSP0000036268735.413820.0814
ENSG00000107625homo_sapiensENSP0000049764149.63529.927homo_sapiensENSP0000036268727.679816.6893
ENSG00000107625homo_sapiensENSP0000048268033.071919.6078homo_sapiensENSP0000036268734.328420.3528
ENSG00000107625homo_sapiensENSP0000029383150.492631.2808homo_sapiensENSP0000036268727.815517.232
ENSG00000107625homo_sapiensENSP0000030611744.351524.477homo_sapiensENSP0000036268728.765315.8752
ENSG00000107625homo_sapiensENSP0000028807144.258924.4259homo_sapiensENSP0000036268728.765315.8752
ENSG00000107625homo_sapiensENSP0000048149528.870816.6473homo_sapiensENSP0000036268733.649919.403
ENSG00000107625homo_sapiensENSP0000041653425.387614.5349homo_sapiensENSP0000036268735.549520.3528
ENSG00000107625homo_sapiensENSP0000036123231.501317.6944homo_sapiensENSP0000036268731.88617.9104
ENSG00000107625homo_sapiensENSP0000049264316.76698.87218homo_sapiensENSP0000036268730.257816.0109
ENSG00000107625homo_sapiensENSP0000023814635.666720.6667homo_sapiensENSP0000036268729.036616.825
ENSG00000107625homo_sapiensENSP0000022579239.739423.2899homo_sapiensENSP0000036268733.107219.403
ENSG00000107625homo_sapiensENSP0000036866735.816220.1268homo_sapiensENSP0000036268730.664917.232
ENSG00000107625homo_sapiensENSP0000033046038.287619.8708homo_sapiensENSP0000036268732.157416.6893
ENSG00000107625homo_sapiensENSP0000026357641.407923.1884homo_sapiensENSP0000036268727.13715.1967
ENSG00000107625homo_sapiensENSP0000038049534.084117.8679homo_sapiensENSP0000036268730.800516.1465
ENSG00000107625homo_sapiensENSP0000031434827.771415.4286homo_sapiensENSP0000036268732.971518.3175
ENSG00000107625homo_sapiensENSP0000034612068.199256.1941homo_sapiensENSP0000036268772.455959.7015
ENSG00000107625homo_sapiensENSP0000037457427.505316.6311homo_sapiensENSP0000036268735.006821.1669
ENSG00000107625homo_sapiensENSP0000035871627.548515.2913homo_sapiensENSP0000036268730.800517.0963
ENSG00000107625homo_sapiensENSP0000044226641.407923.8095homo_sapiensENSP0000036268727.13715.6038
ENSG00000107625homo_sapiensENSP0000047950436.560920.3673homo_sapiensENSP0000036268729.715116.5536
ENSG00000107625homo_sapiensENSP0000035936137.191422.9938homo_sapiensENSP0000036268732.700120.2171
ENSG00000107625homo_sapiensENSP0000032638150.614332.1867homo_sapiensENSP0000036268727.951217.7748
ENSG00000107625homo_sapiensENSP0000025877237.842821.5722homo_sapiensENSP0000036268728.086816.0109
ENSG00000107625homo_sapiensENSP0000049404038.368622.8097homo_sapiensENSP0000036268734.46420.4885
ENSG00000107625homo_sapiensENSP0000033672538.030322.8788homo_sapiensENSP0000036268734.05720.4885
ENSG00000107625homo_sapiensENSP0000024700342.23624.4306homo_sapiensENSP0000036268727.679816.0109
ENSG00000107625homo_sapiensENSP0000033034939.871423.6334homo_sapiensENSP0000036268733.649919.9457
ENSG00000107625homo_sapiensENSP0000024277650.585525.7611homo_sapiensENSP0000036268729.30814.9254
ENSG00000107625homo_sapiensENSP0000023308430.945918.2432homo_sapiensENSP0000036268731.071918.3175
ENSG00000107625homo_sapiensENSP0000030407229.852416.5721homo_sapiensENSP0000036268735.685219.81
ENSG00000107625homo_sapiensENSP0000035069846.813228.1319homo_sapiensENSP0000036268728.900917.3677
ENSG00000107625homo_sapiensENSP0000031072328.658517.1951homo_sapiensENSP0000036268731.88619.1316
ENSG00000107625homo_sapiensENSP0000033234037.96320.7407homo_sapiensENSP0000036268727.815515.1967
ENSG00000107625homo_sapiensENSP0000042483832.872919.8895homo_sapiensENSP0000036268732.293119.5387

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000107625homo_sapiensENSP0000036268710099.8643nomascus_leucogenysENSNLEP0000001419110099.8643
ENSG00000107625homo_sapiensENSP0000036268710099.8643pan_paniscusENSPPAP0000003589510099.8643
ENSG00000107625homo_sapiensENSP00000362687100100pongo_abeliiENSPPYP00000002775100100
ENSG00000107625homo_sapiensENSP0000036268710099.8643pan_troglodytesENSPTRP0000005996010099.8643
ENSG00000107625homo_sapiensENSP00000362687100100gorilla_gorillaENSGGOP00000018967100100
ENSG00000107625homo_sapiensENSP0000036268787.381379.5115sarcophilus_harrisiiENSSHAP0000000653886.792478.9757
ENSG00000107625homo_sapiensENSP0000036268787.92486.2958choloepus_hoffmanniENSCHOP0000000020298.033396.2178
ENSG00000107625homo_sapiensENSP0000036268783.853579.9186dasypus_novemcinctusENSDNOP0000000129995.665691.1765
ENSG00000107625homo_sapiensENSP0000036268786.974285.2103erinaceus_europaeusENSEEUP0000000530087.210985.4422
ENSG00000107625homo_sapiensENSP0000036268788.466886.4315echinops_telfairiENSETEP0000001142188.828386.7847
ENSG00000107625homo_sapiensENSP0000036268710099.7286callithrix_jacchusENSCJAP0000003508610099.7286
ENSG00000107625homo_sapiensENSP0000036268797.42296.4722cercocebus_atysENSCATP0000001715998.626497.6648
ENSG00000107625homo_sapiensENSP0000036268791.180591.0448macaca_fascicularisENSMFAP0000002509410099.8512
ENSG00000107625homo_sapiensENSP0000036268710099.7286macaca_mulattaENSMMUP0000000135010099.7286
ENSG00000107625homo_sapiensENSP0000036268793.622893.3514macaca_nemestrinaENSMNEP0000001516897.595597.3126
ENSG00000107625homo_sapiensENSP0000036268797.964797.5577mandrillus_leucophaeusENSMLEP0000002637299.039898.6283
ENSG00000107625homo_sapiensENSP0000036268792.130391.1805tursiops_truncatusENSTTRP0000001177892.255491.3043
ENSG00000107625homo_sapiensENSP0000036268777.069275.3053vulpes_vulpesENSVVUP0000002793594.352292.1927
ENSG00000107625homo_sapiensENSP0000036268797.693495.6581mus_spretusMGP_SPRETEiJ_P002427998.092696.049
ENSG00000107625homo_sapiensENSP0000036268789.959389.4166equus_asinusENSEASP0000502287398.660798.0655
ENSG00000107625homo_sapiensENSP0000036268798.778897.1506capra_hircusENSCHIP0000000040098.64597.019
ENSG00000107625homo_sapiensENSP0000036268798.914597.9647loxodonta_africanaENSLAFP0000000519299.318898.3651
ENSG00000107625homo_sapiensENSP0000036268799.321698.3718panthera_leoENSPLOP0000002397299.052898.1055
ENSG00000107625homo_sapiensENSP0000036268798.778897.5577ailuropoda_melanoleucaENSAMEP0000001901298.511597.2936
ENSG00000107625homo_sapiensENSP0000036268790.50289.1452bos_indicus_hybridENSBIXP0000501485799.25697.7679
ENSG00000107625homo_sapiensENSP0000036268797.693495.7938oryctolagus_cuniculusENSOCUP0000001836897.959296.0544
ENSG00000107625homo_sapiensENSP0000036268791.587590.9091equus_caballusENSECAP0000002064498.110597.3837
ENSG00000107625homo_sapiensENSP0000036268799.321697.9647canis_lupus_familiarisENSCAFP0084500419199.052897.6996
ENSG00000107625homo_sapiensENSP0000036268799.321698.3718panthera_pardusENSPPRP0000002550899.18798.2385
ENSG00000107625homo_sapiensENSP0000036268799.321697.6934marmota_marmota_marmotaENSMMMP0000001040899.052897.429
ENSG00000107625homo_sapiensENSP0000036268718.181817.3677balaenoptera_musculusENSBMSP0001001925695.035590.7801
ENSG00000107625homo_sapiensENSP0000036268797.964796.6079cavia_porcellusENSCPOP0000000192998.231396.8708
ENSG00000107625homo_sapiensENSP0000036268799.321698.3718felis_catusENSFCAP0000002397199.052898.1055
ENSG00000107625homo_sapiensENSP0000036268798.914597.829ursus_americanusENSUAMP0000001462098.780597.6965
ENSG00000107625homo_sapiensENSP0000036268787.652680.7327monodelphis_domesticaENSMODP0000001345886.711479.8658
ENSG00000107625homo_sapiensENSP0000036268799.185997.422bison_bison_bisonENSBBBP0000002721899.185997.422
ENSG00000107625homo_sapiensENSP0000036268798.778897.6934monodon_monocerosENSMMNP0001502442698.378497.2973
ENSG00000107625homo_sapiensENSP0000036268796.607994.7083sus_scrofaENSSSCP0000001092498.478696.5422
ENSG00000107625homo_sapiensENSP0000036268791.994690.7734microcebus_murinusENSMICP0000001597399.267997.9502
ENSG00000107625homo_sapiensENSP0000036268798.507596.4722octodon_degusENSODEP0000001976898.641396.6033
ENSG00000107625homo_sapiensENSP0000036268797.557794.9796jaculus_jaculusENSJJAP0000002448397.690295.1087
ENSG00000107625homo_sapiensENSP0000036268776.255173.9484jaculus_jaculusENSJJAP0000001834291.382188.6179
ENSG00000107625homo_sapiensENSP0000036268798.643297.1506ovis_aries_rambouilletENSOARP0002001229098.643297.1506
ENSG00000107625homo_sapiensENSP0000036268798.914597.829ursus_maritimusENSUMAP0000001027898.646897.5643
ENSG00000107625homo_sapiensENSP0000036268797.286394.3012ochotona_princepsENSOPRP0000000149397.817294.8158
ENSG00000107625homo_sapiensENSP0000036268790.773489.6879delphinapterus_leucasENSDLEP0000001200798.382497.2059
ENSG00000107625homo_sapiensENSP0000036268798.778897.2863physeter_catodonENSPCTP0000500894198.64597.1545
ENSG00000107625homo_sapiensENSP0000036268797.557795.251mus_caroliMGP_CAROLIEiJ_P002313497.956495.6403
ENSG00000107625homo_sapiensENSP0000036268797.693495.6581mus_musculusENSMUSP0000002027098.092696.049
ENSG00000107625homo_sapiensENSP0000036268799.050297.2863dipodomys_ordiiENSDORP0000000685499.050297.2863
ENSG00000107625homo_sapiensENSP0000036268786.702985.346mustela_putorius_furoENSMPUP0000000455498.611197.0679
ENSG00000107625homo_sapiensENSP0000036268784.938982.0896aotus_nancymaaeENSANAP0000000227790.724687.6812
ENSG00000107625homo_sapiensENSP0000036268790.50290.2307saimiri_boliviensis_boliviensisENSSBOP0000000283699.850399.5509
ENSG00000107625homo_sapiensENSP0000036268798.507597.2863vicugna_pacosENSVPAP0000000057998.507597.2863
ENSG00000107625homo_sapiensENSP0000036268710099.7286chlorocebus_sabaeusENSCSAP0000000393610099.7286
ENSG00000107625homo_sapiensENSP0000036268777.611976.3908tupaia_belangeriENSTBEP0000000095077.611976.3908
ENSG00000107625homo_sapiensENSP0000036268744.233443.0122mesocricetus_auratusENSMAUP0000000010996.735994.0653
ENSG00000107625homo_sapiensENSP0000036268744.233443.0122mesocricetus_auratusENSMAUP0000001125996.735994.0653
ENSG00000107625homo_sapiensENSP0000036268798.778897.829phocoena_sinusENSPSNP0000002586098.245697.3009
ENSG00000107625homo_sapiensENSP0000036268798.643297.5577camelus_dromedariusENSCDRP0000502572998.509597.4255
ENSG00000107625homo_sapiensENSP0000036268799.592998.3718carlito_syrichtaENSTSYP0000000384599.592998.3718
ENSG00000107625homo_sapiensENSP0000036268799.321698.3718panthera_tigris_altaicaENSPTIP0000000659799.18798.2385
ENSG00000107625homo_sapiensENSP0000036268797.693495.251rattus_norvegicusENSRNOP0000009750798.092695.6403
ENSG00000107625homo_sapiensENSP0000036268799.321698.3718prolemur_simusENSPSMP0000001331599.321698.3718
ENSG00000107625homo_sapiensENSP0000036268798.100495.9294microtus_ochrogasterENSMOCP0000000213197.967595.7995
ENSG00000107625homo_sapiensENSP0000036268783.582181.9539sorex_araneusENSSARP0000001224383.923782.2888
ENSG00000107625homo_sapiensENSP0000036268795.522492.2659peromyscus_maniculatus_bairdiiENSPEMP0000003314595.006791.7679
ENSG00000107625homo_sapiensENSP0000036268799.185997.422bos_mutusENSBMUP0000003025199.185997.422
ENSG00000107625homo_sapiensENSP0000036268797.557795.5224mus_spicilegusENSMSIP0000003656097.956495.9128
ENSG00000107625homo_sapiensENSP0000036268798.371896.0651cricetulus_griseus_chok1gshdENSCGRP0000102134898.505496.1957
ENSG00000107625homo_sapiensENSP0000036268777.476376.2551pteropus_vampyrusENSPVAP0000000896877.581576.3587
ENSG00000107625homo_sapiensENSP0000036268798.236196.3365myotis_lucifugusENSMLUP0000001604198.772296.8622
ENSG00000107625homo_sapiensENSP0000036268787.245678.9688vombatus_ursinusENSVURP0001001987082.967775.0968
ENSG00000107625homo_sapiensENSP0000036268799.050297.829neovison_visonENSNVIP0000001592498.782197.5643
ENSG00000107625homo_sapiensENSP0000036268799.185997.422bos_taurusENSBTAP0000002200299.185997.422
ENSG00000107625homo_sapiensENSP0000036268797.693495.9294heterocephalus_glaber_femaleENSHGLP0000001879797.693495.9294
ENSG00000107625homo_sapiensENSP0000036268799.321697.9647canis_lupus_dingoENSCAFP0002003345799.052897.6996
ENSG00000107625homo_sapiensENSP0000036268799.321697.9647sciurus_vulgarisENSSVLP0000500502999.18797.832
ENSG00000107625homo_sapiensENSP0000036268787.51779.3758phascolarctos_cinereusENSPCIP0000002111686.461178.4182
ENSG00000107625homo_sapiensENSP0000036268770.69270.1493procavia_capensisENSPCAP0000000904884.991884.3393
ENSG00000107625homo_sapiensENSP0000036268798.507596.8792nannospalax_galiliENSNGAP0000000363598.775597.1429
ENSG00000107625homo_sapiensENSP0000036268799.185997.422bos_grunniensENSBGRP0000001666399.185997.422
ENSG00000107625homo_sapiensENSP0000036268798.778897.829chinchilla_lanigeraENSCLAP0000001892098.91397.962
ENSG00000107625homo_sapiensENSP0000036268773.812869.6065chinchilla_lanigeraENSCLAP0000000268690.515885.3577
ENSG00000107625homo_sapiensENSP0000036268745.590244.5047chinchilla_lanigeraENSCLAP0000000214090.56688.4097
ENSG00000107625homo_sapiensENSP0000036268791.180589.0095catagonus_wagneriENSCWAP0000002880097.674495.3488
ENSG00000107625homo_sapiensENSP0000036268797.82996.0651ictidomys_tridecemlineatusENSSTOP0000002189298.362996.5894
ENSG00000107625homo_sapiensENSP0000036268799.457398.3718otolemur_garnettiiENSOGAP0000000164299.457398.3718
ENSG00000107625homo_sapiensENSP0000036268781.818278.5617cebus_imitatorENSCCAP0000002555491.087687.4622
ENSG00000107625homo_sapiensENSP0000036268799.321697.829urocitellus_parryiiENSUPAP0001001065899.18797.6965
ENSG00000107625homo_sapiensENSP0000036268798.778897.829moschus_moschiferusENSMMSP0000003117598.64597.6965
ENSG00000107625homo_sapiensENSP0000036268799.864399.4573rhinopithecus_roxellanaENSRROP0000001601099.864399.4573
ENSG00000107625homo_sapiensENSP0000036268797.82995.7938mus_pahariMGP_PahariEiJ_P008630598.228996.1853
ENSG00000107625homo_sapiensENSP0000036268772.455969.7422propithecus_coquereliENSPCOP0000000430089.747986.3866
ENSG00000107625homo_sapiensENSP0000036268772.048857.9376oryzias_javanicusENSOJAP0000004438868.339854.955

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003723enables RNA binding2HDA,IBAHomo_sapiens(9606)Function
GO:0003724enables RNA helicase activity1IBAHomo_sapiens(9606)Function
GO:0005524enables ATP binding1IEAHomo_sapiens(9606)Function
GO:0005730is_active_in nucleolus2IBA,IDAHomo_sapiens(9606)Component
GO:0005886located_in plasma membrane1IDAHomo_sapiens(9606)Component
GO:0016020located_in membrane1HDAHomo_sapiens(9606)Component
GO:0016887enables ATP hydrolysis activity1IEAHomo_sapiens(9606)Function

Expression