Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions TF
Localizations Nucleoli
BulkPerturb-seq

Description

Ensembl ID ENSG00000104221 Gene ID 55290 Accession 17298
Symbol BRF2 Alias BRFU;TFIIIB50 Full Name BRF2 RNA polymerase III transcription initiation factor subunit
Status Confidence Length 6594 bases Strand Minus strand
Position 8 : 37843268 - 37849861 RNA binding domain TF_Zn_Ribbon
Summary This gene encodes one of the multiple subunits of the RNA polymerase III transcription factor complex required for transcription of genes with promoter elements upstream of the initiation site. The product of this gene, a TFIIB-like factor, is directly recruited to the TATA-box of polymerase III small nuclear RNA gene promoters through its interaction with the TATA-binding protein. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000429554 TF_Zn_Ribbon PF08271 3.4e-08 1
ENSP00000430193 TF_Zn_Ribbon PF08271 3.4e-08 1
ENSP00000430107 TF_Zn_Ribbon PF08271 1.9e-07 1
ENSP00000220659 TF_Zn_Ribbon PF08271 5.2e-07 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
21518452 RNA polymerase III transcription in cancer: the BRF2 connection. Stephanie Cabarcas 2011-04-25 Molecular cancer
17670747 The protein kinase CK2 phosphorylates SNAP190 to negatively regulate SNAPC DNA binding and human U6 transcription by RNA polymerase III. Liping Gu 2007-09-21 The Journal of biological chemistry
35110532 Manipulation of RNA polymerase III by Herpes Simplex Virus-1. E Sarah Dremel 2022-02-02 Nature communications
27378302 Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data. Guillaume Devailly 2016-11-01 Bioinformatics (Oxford, England)

Transcripts

Name Transcript ID bp Protein Translation ID
BRF2-201 ENST00000220659 2560 419aa ENSP00000220659
BRF2-202 ENST00000520601 1192 202aa ENSP00000430107
BRF2-203 ENST00000521170 550 72aa ENSP00000430193
BRF2-204 ENST00000522539 473 72aa ENSP00000429554

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000126part_of transcription factor TFIIIB complex1IMPHomo_sapiens(9606)Component
GO:0001006enables RNA polymerase III type 3 promoter sequence-specific DNA binding1IDAHomo_sapiens(9606)Function
GO:0005634is_active_in nucleus1IBAHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1TASHomo_sapiens(9606)Component
GO:0006352involved_in DNA-templated transcription initiation1IBAHomo_sapiens(9606)Process
GO:0006359involved_in regulation of transcription by RNA polymerase III1IMPHomo_sapiens(9606)Process
GO:0017025enables TBP-class protein binding1IBAHomo_sapiens(9606)Function
GO:0034599involved_in cellular response to oxidative stress1IMPHomo_sapiens(9606)Process
GO:0046872enables metal ion binding1IEAHomo_sapiens(9606)Function
GO:0070897involved_in transcription preinitiation complex assembly1IEAHomo_sapiens(9606)Process
GO:0097550part_of transcription preinitiation complex1IBAHomo_sapiens(9606)Component

Expression