Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations Nucleoli
BulkPerturb-seq

Description

Ensembl ID ENSG00000023608 Gene ID 6617 Accession 11134
Symbol SNAPC1 Alias SNAP43;PTFgamma Full Name small nuclear RNA activating complex polypeptide 1
Status Confidence Length 34009 bases Strand Plus strand
Position 14 : 61762420 - 61796428 RNA binding domain SNAPC1
Summary Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000216294 SNAPC1 PF09808 1e-68 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SNAPC1-201 ENST00000216294 2593 368aa ENSP00000216294

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000995enables RNA polymerase III general transcription initiation factor activity1TASHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005654located_in nucleoplasm2IDA,TASHomo_sapiens(9606)Component
GO:0005730located_in nucleolus1IDAHomo_sapiens(9606)Component
GO:0016251enables RNA polymerase II general transcription initiation factor activity1TASHomo_sapiens(9606)Function
GO:0019185part_of snRNA-activating protein complex1IBAHomo_sapiens(9606)Component
GO:0042795involved_in snRNA transcription by RNA polymerase II1IBAHomo_sapiens(9606)Process
GO:0042796involved_in snRNA transcription by RNA polymerase III1IBAHomo_sapiens(9606)Process
GO:0043565enables sequence-specific DNA binding1IBAHomo_sapiens(9606)Function

Expression