Description

Ensembl ID scaffold_604079.1 Gene ID Accession -
Symbol Alias - Full Name
Status Confidence Length Strand
Position RNA binding domain MutS_II
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- scaffold_604079.1 4022 1326aa scaffold_604079.1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
scaffold_604079.1arabidopsis_lyrataAl_scaffold_0002_85926.150413.5802arabidopsis_lyratascaffold_604079.117.57169.12519
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.3__2659__AT3G24495.145.576429.3119arabidopsis_lyratascaffold_604079.138.461524.736
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.3__2059__AT3G18524.138.313820.7044arabidopsis_lyratascaffold_604079.127.073914.6305
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.3__2273__AT3G20475.139.033520.9418arabidopsis_lyratascaffold_604079.123.755712.7451
scaffold_604079.1arabidopsis_lyratascaffold_302339.142.48723.8342arabidopsis_lyratascaffold_604079.16.184013.46908
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.7__1706__AT4G25540.140.16724.5826arabidopsis_lyratascaffold_604079.132.654619.9849
scaffold_604079.1arabidopsis_lyratafgenesh1_pg.C_scaffold_200086826.065213.7845arabidopsis_lyratascaffold_604079.17.843144.14781
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.3__2647__AT3G24320.130.134517.2197arabidopsis_lyratascaffold_604079.125.339414.4796
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.7__2572__AT4G17380.140.025323.2323arabidopsis_lyratascaffold_604079.123.906513.8763
scaffold_604079.1arabidopsis_lyratafgenesh2_kg.8__1303__AT5G54090.127.763814.8241arabidopsis_lyratascaffold_604079.116.66678.89894

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
scaffold_604079.1arabidopsis_lyratascaffold_604079.134.389120.9653chondrus_crispusCDF3996547.848929.171
scaffold_604079.1arabidopsis_lyratascaffold_604079.137.782826.546chlamydomonas_reinhardtiiPNW8358139.667527.8701
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.935144.5701marchantia_polymorphaPTQ4005151.010137.3106
scaffold_604079.1arabidopsis_lyratascaffold_604079.168.17558.371cannabis_sativa_femalecds.evm.model.01.55171.125160.8969
scaffold_604079.1arabidopsis_lyratascaffold_604079.171.568659.8039ficus_caricaFCD_00013732-RA:cds7361
scaffold_604079.1arabidopsis_lyratascaffold_604079.15.052793.69532beta_vulgarisKMS9375251.93837.9845
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.105650cucumis_meloMELO3C015928.2.168.294856.8123
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.965359.1252cucumis_sativusKGN4501171.996959.9847
scaffold_604079.1arabidopsis_lyratascaffold_604079.114.253412.0664populus_trichocarpaPotri.008G191051.1.v4.17563.4921
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.739159.3514citrullus_lanatusCla97C09G167590.172.209460.5851
scaffold_604079.1arabidopsis_lyratascaffold_604079.196.983494.5701arabidopsis_thalianaAT4G02070.197.129994.713
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.135758.9744prunus_dulcisVVA2533472.998461.3815
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.478186.4253brassica_napusCDX9180891.824486.7525
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.779886.4253brassica_napusCDX9095691.024785.7143
scaffold_604079.1arabidopsis_lyratascaffold_604079.135.520429.7134malus_domestica_goldenmRNA:MD01G000240072.018360.2446
scaffold_604079.1arabidopsis_lyratascaffold_604079.110.1817.99397malus_domestica_goldenmRNA:MD11G025840064.903850.9615
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.060358.9744malus_domestica_goldenmRNA:MD03G024280070.485659.3323
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.834158.6727prunus_persicaONH9411872.798761.1635
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.855286.5008brassica_junceacds.BjuB08g29740S89.165483.9678
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.176586.1991brassica_junceacds.BjuA03g31610S88.701483.8591
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.683358.1448cajanus_cajanC.cajan_28153.t73.217161.0935
scaffold_604079.1arabidopsis_lyratascaffold_604079.171.040760.0302glycine_maxKRG9652373.998462.5295
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.286659.5777lupinus_angustifoliusOIW1341473.328162.1558
scaffold_604079.1arabidopsis_lyratascaffold_604079.158.597348.4163lupinus_angustifoliusOIV9552471.481159.0616
scaffold_604079.1arabidopsis_lyratascaffold_604079.171.116159.6531phaseolus_vulgarisESW3516673.044261.2703
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.060357.8431medicago_truncatulaAES8218372.578159.9219
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.286659.276vigna_angularisKOM3941070.392759.3656
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.512857.9186pisum_sativumPsat3g020000.1.cds72.932959.9064
scaffold_604079.1arabidopsis_lyratascaffold_604079.166.440456.3348vigna_radiataVradi03g06460.174.34663.038
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.889959.5777vigna_unguiculataVigun01g196700.1.v1.273.038161.3831
scaffold_604079.1arabidopsis_lyratascaffold_604079.167.571655.5807solanum_lycopersicumSolyc01g079520.3.131.165225.6348
scaffold_604079.1arabidopsis_lyratascaffold_604079.174.132762.0664manihot_esculentaOAY6191775.152962.9205
scaffold_604079.1arabidopsis_lyratascaffold_604079.168.778357.9186capsicum_annuumPHT9487369.353658.403
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.758757.994sesamum_indicumSIN_1012611.t67.765656.337
scaffold_604079.1arabidopsis_lyratascaffold_604079.15.656114.6003lactuca_sativacds-PLY68601.168.181855.4545
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.532457.2398helianthus_annuusmRNA:HanXRQr2_Chr04g017682173.642260.623
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.99148.7179avena_sativa_sangAVESA.00010b.r2.5DG0965790.1.CDS63.182249.6541
scaffold_604079.1arabidopsis_lyratascaffold_604079.146.229335.6712avena_sativa_sangAVESA.00010b.r2.5CG0889440.1.CDS59.746646.1014
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.915548.7179avena_sativa_sangAVESA.00010b.r2.5AG0843950.1.CDS63.105349.6541
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.915548.7934avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002415.163.105349.731
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.99148.7179avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001954.163.182249.6541
scaffold_604079.1arabidopsis_lyratascaffold_604079.146.455535.7466avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0002078.159.287845.6208
scaffold_604079.1arabidopsis_lyratascaffold_604079.155.429943.8914oryza_longistaminataKN539584.1_FGP00366.395752.5745
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.236847.9638oryza_rufipogonORUFI09G10530.164.189750.2767
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.764748.7934lolium_perennecds.KYUSt_chr5.2953757.352945.3081
scaffold_604079.1arabidopsis_lyratascaffold_604079.156.334844.5701oryza_brachyanthaOB09G16400.165.641551.9332
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.613948.5671oryza_punctataOPUNC09G08350.163.778350.2732
scaffold_604079.1arabidopsis_lyratascaffold_604079.155.505343.5143oryza_glaberrimaORGLA09G0073300.157.187344.8329
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.725550.5279secale_cerealeSECCE5Rv1G0326850.163.438450.3003
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.745149.6983setaria_viridisTKW3307063.414650.2287
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.99149.3213setaria_italicaKQL2443763.133650.2304
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.046849.9246triticum_urartuTuG1812G0500002363.01.T0163.381350.1895
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.840150.1508zea_maysZm00001eb312280_P00163.271651.3117
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.518949.4721triticum_turgidumTRITD5Bv1G125190.362.237249.2492
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.197649.7738triticum_turgidumTRITD0Uv1G046350.163.340949.8866
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.443449.0196ananas_comosusAco001058.1.mrna167.924553.3224
scaffold_604079.1arabidopsis_lyratascaffold_604079.156.18444.721triticum_aestivumTraesCS5D02G212500.165.465752.109
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.197649.9246triticum_aestivumTraesCS5A02G206300.163.53350.1895
scaffold_604079.1arabidopsis_lyratascaffold_604079.140.648625.264caenorhabditis_elegansY47G6A.11.145.446928.2462
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.99150.0754sorghum_bicolorKXG3560163.036850.9202
scaffold_604079.1arabidopsis_lyratascaffold_604079.147.81337.7074asparagus_officinalisONK6717964.95951.2295
scaffold_604079.1arabidopsis_lyratascaffold_604079.144.871829.1101homo_sapiensENSP0000023442043.7528.3824
scaffold_604079.1arabidopsis_lyratascaffold_604079.164.705950.5279amborella_trichopodaERN0309262.995649.1924
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.889960.4072corylus_avellanaCav02g15330.t171.537360.9589
scaffold_604079.1arabidopsis_lyratascaffold_604079.172.247460.7843vitis_viniferaVitvi07g00406_P00173.862862.1434
scaffold_604079.1arabidopsis_lyratascaffold_604079.141.478126.8477drosophila_melanogasterFBpp007539946.218529.916
scaffold_604079.1arabidopsis_lyratascaffold_604079.168.476656.1086ipomoea_trilobaitb07g21380.t169.685357.099
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.122250.3017brachypodium_distachyonKQJ9017863.505350.607
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.010647.5113oryza_sativaOs09t0407600-0263.401349.373
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.312248.0392oryza_meridionalisOMERI09G07650.164.677850.6762
scaffold_604079.1arabidopsis_lyratascaffold_604079.155.882444.6455eragrostis_curvulaTVU0949455.464144.3114
scaffold_604079.1arabidopsis_lyratascaffold_604079.157.164442.6094physcomitrium_patensPp3c20_1350V3.153.606839.9576
scaffold_604079.1arabidopsis_lyratascaffold_604079.17.843146.18401gossypium_raimondiiKJB8216964.596350.9317
scaffold_604079.1arabidopsis_lyratascaffold_604079.17.918556.25943gossypium_raimondiiKJB6109565.217451.5528
scaffold_604079.1arabidopsis_lyratascaffold_604079.172.171961.2368gossypium_raimondiiKJB0946072.775761.7491
scaffold_604079.1arabidopsis_lyratascaffold_604079.16.63655.58069gossypium_raimondiiKJB3111961.971852.1127
scaffold_604079.1arabidopsis_lyratascaffold_604079.15.354454.44947gossypium_raimondiiKJB1017259.663949.5798
scaffold_604079.1arabidopsis_lyratascaffold_604079.165.309254.2232prunus_aviumPav_sc0000130.1_g170.1.mk:mrna70.463858.5028
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.387647.813oryza_glumipatulaOGLUM09G10160.164.398750.1582
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.758757.3152nicotiana_attenuataOIT2050570.182157.6631
scaffold_604079.1arabidopsis_lyratascaffold_604079.169.230857.089coffea_canephoraCDP1707770.615458.2308
scaffold_604079.1arabidopsis_lyratascaffold_604079.173.604862.6697theobroma_cacaoEOX9524674.164163.1459
scaffold_604079.1arabidopsis_lyratascaffold_604079.142.609426.7722ciona_savignyiENSCSAVP0000000684443.934727.605
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.286657.6923fraxinus_excelsiorFRAEX38873_v2_000265200.1.cds71.362958.5758
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.312248.0392oryza_indicaBGIOSGA030733-PA64.268850.3557
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.895953.1674cynara_cardunculusKVI1244771.282160.2564
scaffold_604079.1arabidopsis_lyratascaffold_604079.172.624462.0664juglans_regiacds.Jr11_15860_p171.492261.0987
scaffold_604079.1arabidopsis_lyratascaffold_604079.172.171961.9155pistacia_veracds-EVM0003149.173.502363.0568
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.478186.2745arabis_alpinaKFK3077692.666287.395
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.739159.7285eucalyptus_grandisKCW5010871.168460.091
scaffold_604079.1arabidopsis_lyratascaffold_604079.165.535453.6953chenopodium_quinoaAUR62011818-RA:cds71.463858.5526
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.292651.5837chenopodium_quinoaAUR62024662-RA:cds73.22760.6383
scaffold_604079.1arabidopsis_lyratascaffold_604079.136.274522.6244galdieria_sulphurariaEME3006645.896928.626
scaffold_604079.1arabidopsis_lyratascaffold_604079.146.606334.6154chara_brauniiGBG8621244.717833.2127
scaffold_604079.1arabidopsis_lyratascaffold_604079.172.322861.2368citrus_clementinaESR5772374.456563.0435
scaffold_604079.1arabidopsis_lyratascaffold_604079.193.81689.2911eutrema_salsugineumESQ3785893.113888.6228
scaffold_604079.1arabidopsis_lyratascaffold_604079.139.668223.454saccharomyces_cerevisiaeYDR097C42.35125.0403
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.387648.0392oryza_barthiiOBART09G09880.164.347850.3557
scaffold_604079.1arabidopsis_lyratascaffold_604079.135.897427.9789dioscorea_rotundataDRNTG_06836.161.65848.057
scaffold_604079.1arabidopsis_lyratascaffold_604079.129.110124.1327dioscorea_rotundataDRNTG_17418.175.390662.5
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.135759.5023corymbia_citriodoracds-KAF8006661.171.31960.5061
scaffold_604079.1arabidopsis_lyratascaffold_604079.166.817553.092musa_acuminataMa05_p26770.269.272955.043
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.060357.3152rosa_chinensisPRQ2166073.55560.1742
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.046850.1508hordeum_vulgareHORVU.MOREX.r3.5HG0479520.162.904450.0376
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.62986.6516brassica_oleraceaBo3g052790.189.601884.7345
scaffold_604079.1arabidopsis_lyratascaffold_604079.18.14486.78733quercus_lobataQL07p024515:mrna69.230857.6923
scaffold_604079.1arabidopsis_lyratascaffold_604079.173.227861.6893corchorus_capsularisOMO6398073.504961.9228
scaffold_604079.1arabidopsis_lyratascaffold_604079.167.119255.1282kalanchoe_fedtschenkoiKaladp0067s0250.1.v1.169.314656.9315
scaffold_604079.1arabidopsis_lyratascaffold_604079.135.82223.1523cyanidioschyzon_merolaeCMI229CT42.8727.7076
scaffold_604079.1arabidopsis_lyratascaffold_604079.198.717997.4359arabidopsis_hallerig09153.t198.717997.4359
scaffold_604079.1arabidopsis_lyratascaffold_604079.145.852230.9201ostreococcus_lucimarinusABO9676954.627136.8374
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.764748.9442triticum_dicoccoidesTRIDC5BG035080.265.25951.7131
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.895949.6229triticum_dicoccoidesTRIDC5AG033220.363.13449.8107
scaffold_604079.1arabidopsis_lyratascaffold_604079.167.571656.2594daucus_carotaKZM9507271.737459.7278
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.859747.8884digitaria_exilisDexi2B01G0016140.1:cds62.220548.9591
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.256447.5113digitaria_exilisDexi2A01G0017200.1:cds61.794348.7239
scaffold_604079.1arabidopsis_lyratascaffold_604079.119.984916.6667nymphaea_colorataNC5G0161380.1:cds61.915951.6355
scaffold_604079.1arabidopsis_lyratascaffold_604079.141.553531.9759nymphaea_colorataNC5G0161360.1:cds61.42747.2687
scaffold_604079.1arabidopsis_lyratascaffold_604079.196.229393.2127camelina_sativaCsa02g005230.185.408382.7309
scaffold_604079.1arabidopsis_lyratascaffold_604079.163.876362.1418camelina_sativaCsa08g052420.196.689594.0639
scaffold_604079.1arabidopsis_lyratascaffold_604079.195.852293.1373camelina_sativaCsa13g055210.195.99793.2779
scaffold_604079.1arabidopsis_lyratascaffold_604079.152.18739.0649selaginella_moellendorffiiEFJ2912456.168842.0455
scaffold_604079.1arabidopsis_lyratascaffold_604079.147.360536.2745selaginella_moellendorffiiEFJ1766064.410349.3333
scaffold_604079.1arabidopsis_lyratascaffold_604079.191.327386.0483brassica_rapa_ro18A03p032920.1_BraROA.190.575985.3403
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.538549.7738eragrostis_tefEt_2A_016348.CDS63.452651.3219
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.407249.1704eragrostis_tefEt_2B_020441.CDS62.286250.6998
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.312248.0392leersia_perrieriLPERR09G06740.163.072149.4182
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.518948.9442panicum_halliiPUZ7065562.660649.0552
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.512859.0498actinidia_chinensisPSS1472372.033960.3236
scaffold_604079.1arabidopsis_lyratascaffold_604079.164.705953.6953actinidia_chinensisPSR9471572.222259.9327
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.935148.2655aegilops_tauschiiAET5Gv20503900.163.974750.673
scaffold_604079.1arabidopsis_lyratascaffold_604079.170.588258.2956olea_europaeaOE9A029260C371.669259.1884
scaffold_604079.1arabidopsis_lyratascaffold_604079.160.18148.0392echinochloa_crusgalliscaffold275.88.cds57.742446.0926
scaffold_604079.1arabidopsis_lyratascaffold_604079.162.292649.9246echinochloa_crusgalliscaffold87.217.cds58.292246.7184
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.236848.5671echinochloa_crusgalliscaffold64.217.cds56.271744.6292
scaffold_604079.1arabidopsis_lyratascaffold_604079.161.236848.1146oryza_nivaraONIVA09G09380.164.189750.4348
scaffold_604079.1arabidopsis_lyratascaffold_604079.166.666754.6003trifolium_pratenseTp57577_TGAC_v2_mRNA425172.697459.5395
scaffold_604079.1arabidopsis_lyratascaffold_604079.168.929159.7285quercus_subercds-POE57964.175.474865.4005
scaffold_604079.1arabidopsis_lyratascaffold_604079.15.354454.29864quercus_subercds-POE57963.156.845.6

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression