Description

Ensembl ID scaffold_302544.1 Gene ID Accession -
Symbol Alias - Full Name
Status Confidence Length Strand
Position RNA binding domain Methyltransf_31 , Met_10 , Methyltransf_15 , tRNA_U5-meth_tr , MTS
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- scaffold_302544.1 1721 559aa scaffold_302544.1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
scaffold_302544.1arabidopsis_lyrataAl_scaffold_0004_112327.750617.4817arabidopsis_lyratascaffold_302544.140.608225.5814
scaffold_302544.1arabidopsis_lyratascaffold_500633.129.296915.0391arabidopsis_lyratascaffold_302544.126.833613.7746
scaffold_302544.1arabidopsis_lyratascaffold_105445.125.400514.8741arabidopsis_lyratascaffold_302544.119.856911.6279

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
scaffold_302544.1arabidopsis_lyratascaffold_302544.125.402518.6047chondrus_crispusCDF3235766.046548.3721
scaffold_302544.1arabidopsis_lyratascaffold_302544.152.593937.5671chlamydomonas_reinhardtiiPNW7499440.776729.1262
scaffold_302544.1arabidopsis_lyratascaffold_302544.171.019753.3095marchantia_polymorphaPTQ3801267.747450.8532
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.899871.9141papaver_somniferumRZC4983778.823567.563
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.363272.093papaver_somniferumRZC5173984.115572.7437
scaffold_302544.1arabidopsis_lyratascaffold_302544.146.869441.1449papaver_somniferumRZC5087572.375763.5359
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.794372.6297cannabis_sativa_femalecds.evm.model.02.292086.338873.9526
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.184374.0608ficus_caricaFCD_00005578-RA:cds83.783874.5946
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.720969.9463beta_vulgarisKMT0171482.105368.5965
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.720971.1986cucumis_meloMELO3C024409.2.183.27470.8185
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.54271.3775cucumis_sativusKGN4554783.096170.9964
scaffold_302544.1arabidopsis_lyratascaffold_302544.185.867673.703populus_trichocarpaPotri.001G195300.1.v4.184.955772.9204
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.647671.5564citrullus_lanatusCla97C09G162380.182.206471.1744
scaffold_302544.1arabidopsis_lyratascaffold_302544.197.137794.8122arabidopsis_thalianaAT3G21300.198.014495.6679
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.615474.9553prunus_dulcisVVA2428387.430777.4492
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.665588.3721brassica_napusCDY5145288.095284.0136
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.128887.6565brassica_napusCDY5691788.336284.048
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.110972.8086malus_domestica_goldenmRNA:MD17G015540083.606674.1348
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.615474.7764prunus_persicaONI1565787.430777.2643
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.844488.3721brassica_junceacds.BjuB01g15390S87.966183.7288
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.486688.551brassica_junceacds.BjuA05g23740S87.478983.7563
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744264.5796cajanus_cajanC.cajan_13348.t82.65969.5568
scaffold_302544.1arabidopsis_lyratascaffold_302544.151.878444.0072glycine_maxKRH0998477.74865.9517
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.037670.3041glycine_maxKRH2334784.990673.7336
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.216569.7674lupinus_angustifoliusOIW0378972.178162.0032
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.858770.6619phaseolus_vulgarisESW2254483.088272.6103
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.500968.3363medicago_truncatulaAES6789480.357168.2143
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.858769.9463vigna_angularisKOM4436979.577568.838
scaffold_302544.1arabidopsis_lyratascaffold_302544.137.209334.347pisum_sativumPsat5g294640.2.cds93.693786.4865
scaffold_302544.1arabidopsis_lyratascaffold_302544.147.406138.1038pisum_sativumPsat5g294680.1.cds72.802258.5165
scaffold_302544.1arabidopsis_lyratascaffold_302544.177.280967.6208vigna_radiataVradi05g20840.179.704869.7417
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.395370.8408vigna_unguiculataVigun05g277700.1.v1.274.468164.8118
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.037668.6941solanum_lycopersicumSolyc03g121260.3.149.889942.2907
scaffold_302544.1arabidopsis_lyratascaffold_302544.185.330972.8086manihot_esculentaOAY3655484.12771.7813
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.037668.1574capsicum_annuumPHT8894879.753567.0775
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.395369.2308solanum_tuberosumPGSC0003DMT40000643771.20560.5634
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.574268.6941sesamum_indicumSIN_1010360.t82.758669.6915
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.468768.3363lactuca_sativacds-PLY94655.180.034766.3194
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.110968.5152helianthus_annuusmRNA:HanXRQr2_Chr04g014061180.385367.0753
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.313162.254avena_sativa_sangAVESA.00010b.r2.3DG0522420.1.CDS75.719462.5899
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.670862.4329avena_sativa_sangAVESA.00010b.r2.3CG0493580.3.CDS75.942662.6571
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.670862.254avena_sativa_sangAVESA.00010b.r2.3AG0421170.1.CDS76.079162.5899
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.670862.4329avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0001935.671.694959.1525
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.313162.254avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0000305.172.212759.6913
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.670862.254avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000845.171.573658.8832
scaffold_302544.1arabidopsis_lyratascaffold_302544.128.801425.2236oryza_longistaminataAMDW01039695.1_FGP00193.063681.5029
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.565362.7907oryza_rufipogonORUFI01G06560.176.702562.9032
scaffold_302544.1arabidopsis_lyratascaffold_302544.155.992847.9428oryza_brachyanthaOB01G15960.186.944474.4444
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.028663.1485oryza_punctataOPUNC01G05790.173.529461.0727
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744262.7907oryza_glaberrimaORGLA01G0056900.176.881762.9032
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.134262.254secale_cerealeSECCE3Rv1G0160940.175.134262.254
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.028661.8962setaria_viridisTKW1395476.301662.1185
scaffold_302544.1arabidopsis_lyratascaffold_302544.154.382842.7549setaria_italicaKQL0480971.867656.5012
scaffold_302544.1arabidopsis_lyratascaffold_302544.143.649439.1771triticum_urartuTuG1812S0002924200.01.T0291.385882.0225
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.207561.5385zea_maysZm00001eb121120_P00376.344161.6487
scaffold_302544.1arabidopsis_lyratascaffold_302544.171.198659.3918triticum_turgidumTRITD3Av1G032490.166.444155.4257
scaffold_302544.1arabidopsis_lyratascaffold_302544.174.955362.4329triticum_turgidumTRITD3Bv1G039700.175.089662.5448
scaffold_302544.1arabidopsis_lyratascaffold_302544.177.10264.4007ananas_comosusAco009933.1.mrna167.343856.25
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.49262.9696triticum_aestivumTraesCS3D02G108100.175.627263.0824
scaffold_302544.1arabidopsis_lyratascaffold_302544.174.955362.4329triticum_aestivumTraesCS3B02G124400.175.089662.5448
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.49262.9696triticum_aestivumTraesCS3A02G105900.175.49262.9696
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744262.6118sorghum_bicolorEES0013676.881762.724
scaffold_302544.1arabidopsis_lyratascaffold_302544.172.629763.6852asparagus_officinalisONK6659189.230878.2418
scaffold_302544.1arabidopsis_lyratascaffold_302544.178.533164.2218amborella_trichopodaERN1538980.847166.1142
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.363271.1986corylus_avellanaCav07g09920.t173.040762.3824
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.615471.9141vitis_viniferaVitvi09g00224_P00183.421570.8995
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.574269.7674ipomoea_trilobaitb06g16240.t180.851169.1489
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.49261.5385brachypodium_distachyonKQK0314376.03661.982
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.565362.7907oryza_sativaOs01t0193600-0176.840263.0162
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.923162.7907oryza_meridionalisOMERI01G06170.177.477563.2432
scaffold_302544.1arabidopsis_lyratascaffold_302544.177.280962.9696eragrostis_curvulaTVU2140577.005362.7451
scaffold_302544.1arabidopsis_lyratascaffold_302544.170.48353.8462physcomitrium_patensPp3c25_5440V3.865.666750.1667
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.720970.8408gossypium_raimondiiKJB7033884.936571.8693
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.436574.7764prunus_aviumPav_sc0001797.1_g400.1.mk:mrna87.245877.2643
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744262.7907oryza_glumipatulaOGLUM01G06550.177.158363.1295
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.93268.6941nicotiana_attenuataOIT2095080.77667.7249
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.574268.873coffea_canephoraCDO9795077.948765.812
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.184370.483theobroma_cacaoEOY2700985.635472.5599
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.753171.0197fraxinus_excelsiorFRAEX38873_v2_000222810.1.cds81.316770.6406
scaffold_302544.1arabidopsis_lyratascaffold_302544.167.084154.5617cynara_cardunculusKVH9797476.844362.5
scaffold_302544.1arabidopsis_lyratascaffold_302544.179.069869.9463juglans_regiacds.Jr12_18320_p186.328176.3672
scaffold_302544.1arabidopsis_lyratascaffold_302544.144.18639.8927juglans_regiacds.Jr12_18310_p192.509483.5206
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.565361.8962saccharum_spontaneumSspon.03G0022950-3C-mRNA-1:cds72.913158.9438
scaffold_302544.1arabidopsis_lyratascaffold_302544.150.447245.6172pistacia_veracds-EVM0003014.192.45983.6066
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.257673.703pistacia_veracds-EVM0009176.185.636474.9091
scaffold_302544.1arabidopsis_lyratascaffold_302544.193.023388.551arabis_alpinaKFK3944095.412890.8257
scaffold_302544.1arabidopsis_lyratascaffold_302544.153.130644.0072eucalyptus_grandisKCW5362878.779865.252
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.500969.5886eucalyptus_grandisKCW5363288.408676.4244
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.216568.3363chenopodium_quinoaAUR62023880-RA:cds80.35467.6106
scaffold_302544.1arabidopsis_lyratascaffold_302544.150.80536.8515galdieria_sulphurariaEME3161351.449337.3188
scaffold_302544.1arabidopsis_lyratascaffold_302544.161.001845.975chara_brauniiGBG7172846.776435.2538
scaffold_302544.1arabidopsis_lyratascaffold_302544.184.436573.3453citrus_clementinaESR3970183.245172.3104
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.486688.1932eutrema_salsugineumESQ4773994.171289.7996
scaffold_302544.1arabidopsis_lyratascaffold_302544.133.810419.4991saccharomyces_cerevisiaeYKR056W29.577517.0579
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744262.7907oryza_barthiiOBART01G05980.177.019763.0162
scaffold_302544.1arabidopsis_lyratascaffold_302544.179.785367.4419dioscorea_rotundataDRNTG_21894.181.535768.9214
scaffold_302544.1arabidopsis_lyratascaffold_302544.161.001851.3417corymbia_citriodoracds-KAF8031022.178.390865.977
scaffold_302544.1arabidopsis_lyratascaffold_302544.143.470538.8193corymbia_citriodoracds-KAF7847848.192.045582.197
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.32268.5152musa_acuminataMa02_p21290.180.900969.009
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.54272.093rosa_chinensisPRQ5122286.003774.2173
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.134262.4329hordeum_vulgareHORVU.MOREX.r3.3HG0236330.275.134262.4329
scaffold_302544.1arabidopsis_lyratascaffold_302544.191.949987.4776brassica_oleraceaBo5g101210.188.164783.8765
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.005472.6297quercus_lobataQL05p016421:mrna84.826374.223
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.647668.873kalanchoe_fedtschenkoiKaladp0092s0224.1.v1.184.15370.1275
scaffold_302544.1arabidopsis_lyratascaffold_302544.197.316696.0644arabidopsis_hallerig11232.t198.372597.1067
scaffold_302544.1arabidopsis_lyratascaffold_302544.150.268333.6315ostreococcus_lucimarinusABO9374952.425435.0746
scaffold_302544.1arabidopsis_lyratascaffold_302544.163.506355.0984triticum_dicoccoidesTRIDC3BG017510.180.865670.1595
scaffold_302544.1arabidopsis_lyratascaffold_302544.162.611854.3828triticum_dicoccoidesTRIDC3AG013050.381.206570.5336
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.500969.7674daucus_carotaKZM8102880.789970.018
scaffold_302544.1arabidopsis_lyratascaffold_302544.167.978554.5617digitaria_exilisDexi5B01G0003340.1:cds75.098860.2767
scaffold_302544.1arabidopsis_lyratascaffold_302544.155.277343.4705digitaria_exilisDexi5A01G0003310.1:cds71.034555.8621
scaffold_302544.1arabidopsis_lyratascaffold_302544.173.524162.6118nymphaea_colorataNC1G0132420.1:cds82.862970.5645
scaffold_302544.1arabidopsis_lyratascaffold_302544.118.962418.6047camelina_sativaCsa15g031700.193.805392.0354
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.468777.2809camelina_sativaCsa19g029360.193.131387.2727
scaffold_302544.1arabidopsis_lyratascaffold_302544.195.706692.6655camelina_sativaCsa01g024410.196.050392.9982
scaffold_302544.1arabidopsis_lyratascaffold_302544.193.917791.0555camelina_sativaCsa15g031720.196.685193.7385
scaffold_302544.1arabidopsis_lyratascaffold_302544.168.694152.0572selaginella_moellendorffiiEFJ2485671.641854.291
scaffold_302544.1arabidopsis_lyratascaffold_302544.168.87352.0572selaginella_moellendorffiiEFJ3027671.828454.291
scaffold_302544.1arabidopsis_lyratascaffold_302544.192.844488.3721brassica_rapa_ro18A05p036830.1_BraROA.193.177788.6894
scaffold_302544.1arabidopsis_lyratascaffold_302544.171.019757.7818eragrostis_tefEt_9B_064165.CDS76.053661.8774
scaffold_302544.1arabidopsis_lyratascaffold_302544.177.459763.1485eragrostis_tefEt_3B_030897.CDS77.183662.9234
scaffold_302544.1arabidopsis_lyratascaffold_302544.174.418661.7174leersia_perrieriLPERR01G05690.178.048864.728
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.028662.7907panicum_halliiPUZ5848276.438963.1295
scaffold_302544.1arabidopsis_lyratascaffold_302544.183.005471.7352actinidia_chinensisPSS0737682.709471.4795
scaffold_302544.1arabidopsis_lyratascaffold_302544.175.313162.7907aegilops_tauschiiAET3Gv20233900.169.243457.7303
scaffold_302544.1arabidopsis_lyratascaffold_302544.181.93271.1986olea_europaeaOE9A077673C181.494770.8185
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.028661.5385echinochloa_crusgalliscaffold36.312.cds70.833357.3333
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.744262.0751echinochloa_crusgalliscaffold4.102.cds50.234240.6323
scaffold_302544.1arabidopsis_lyratascaffold_302544.176.207562.6118oryza_nivaraONIVA01G06930.176.481162.8366
scaffold_302544.1arabidopsis_lyratascaffold_302544.180.32267.9785trifolium_pratenseTp57577_TGAC_v2_mRNA677280.46668.1004
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.647672.2719quercus_subercds-POF11318.184.770674.1284
scaffold_302544.1arabidopsis_lyratascaffold_302544.182.468772.2719quercus_subercds-POF11854.184.587274.1284

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression