Description

Ensembl ID itb04g05220 Gene ID Accession -
Symbol Alias - Full Name RNA polymerase sigma factor sigD, chloroplastic
Status Confidence Length 1965 bases Strand Minus strand
Position 4 : 3243384 - 3245348 RNA binding domain Sigma70_r3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
itb04g05220 Sigma70_r3 PF04539 7.7e-11 1
itb04g05220 Sigma70_r3 PF04539 3.6e-07 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- itb04g05220.t4 1671 275aa itb04g05220.t4
- itb04g05220.t1 1406 433aa itb04g05220.t1
- itb04g05220.t3 1504 294aa itb04g05220.t3
- itb04g05220.t2 1490 361aa itb04g05220.t2

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
itb04g05220

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
itb04g05220

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression