Description

Ensembl ID gene-LSAT_2X33981 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 9476 bases Strand Minus strand
Position 2 : 76032139 - 76041614 RNA binding domain PPR_3 , RNA_pol , PPR_long , PPR , RPOL_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
cds-PLY65132 PPR_3 PF13812 7e-77 1
cds-PLY65132 PPR_3 PF13812 7e-77 2
cds-PLY65132 PPR_3 PF13812 7e-77 3
cds-PLY65132 PPR_3 PF13812 7e-77 4
cds-PLY65132 PPR_3 PF13812 7e-77 5
cds-PLY65132 PPR_3 PF13812 7e-77 6
cds-PLY65132 RNA_pol PF00940 2.3e-25 7
cds-PLY65132 PPR_long PF17177 8.7e-45 8
cds-PLY65132 PPR_long PF17177 8.7e-45 9
cds-PLY65132 PPR_long PF17177 8.7e-45 10
cds-PLY65132 PPR PF01535 5.8e-82 11
cds-PLY65132 PPR PF01535 5.8e-82 12
cds-PLY65132 PPR PF01535 5.8e-82 13
cds-PLY65132 PPR PF01535 5.8e-82 14
cds-PLY65132 PPR PF01535 5.8e-82 15
cds-PLY65132 PPR PF01535 5.8e-82 16
cds-PLY65132 PPR PF01535 5.8e-82 17
cds-PLY65132 PPR PF01535 5.8e-82 18
cds-PLY65132 PPR PF01535 5.8e-82 19
cds-PLY65132 PPR PF01535 5.8e-82 20
cds-PLY65132 PPR PF01535 5.8e-82 21
cds-PLY65132 PPR PF01535 5.8e-82 22
cds-PLY65132 RPOL_N PF14700 9.1e-53 23

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- rna-gnl
WGS:NBSK
LSAT_2X33981_mrna 3877 1207aa cds-PLY65132.1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
gene-LSAT_2X33981

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
gene-LSAT_2X33981

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression