Description

Ensembl ID g28632 Gene ID Accession -
Symbol Alias - Full Name HEAT repeat-containing protein
Status Confidence Length 8762 bases Strand Minus strand
Position FJVB01000238.1 : 106800 - 115561 RNA binding domain Symplekin_C , SYMPK_PTA1_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g28632 Symplekin_C PF12295 5.2e-61 1
g28632 SYMPK_PTA1_N PF11935 7.3e-44 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g28632.t1 4688 1479aa g28632.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g28632arabidopsis_hallerig18517.t1.cds141.528219.2691arabidopsis_hallerig28632.t18.451663.92157
g28632arabidopsis_hallerig12900.t149.391632.6414arabidopsis_hallerig28632.t146.653130.8316
g28632arabidopsis_hallerig08112.t1.cds135.023817.5911arabidopsis_hallerig28632.t114.94257.50507
g28632arabidopsis_hallerig04696.t1.cds134.615417.9487arabidopsis_hallerig28632.t114.60457.57268
g28632arabidopsis_hallerig23555.t1.cds133.794216.8971arabidopsis_hallerig28632.t114.87497.43746
g28632arabidopsis_hallerig21198.t1.cds131.775716.2617arabidopsis_hallerig28632.t111.49435.88235
g28632arabidopsis_hallerig12675.t1.cds128.698814.6168arabidopsis_hallerig28632.t110.88575.54429

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g28632arabidopsis_hallerig28632.t129.614615.551chondrus_crispusCDF4039235.696818.7449
g28632arabidopsis_hallerig28632.t135.699820.5544chlamydomonas_reinhardtiiPNW8687026.307915.147
g28632arabidopsis_hallerig28632.t158.282645.6389papaver_somniferumRZC7926663.899250.0371
g28632arabidopsis_hallerig28632.t160.108246.9236papaver_somniferumRZC8443865.463951.1046
g28632arabidopsis_hallerig28632.t165.652552.0622cannabis_sativa_femalecds.evm.model.09.32469.856155.3957
g28632arabidopsis_hallerig28632.t148.478733.6038physcomitrium_patensPp3c2_10640V3.555.452438.4377
g28632arabidopsis_hallerig28632.t164.908751.8594ficus_caricaFCD_00015202-RA:cds68.718754.9034
g28632arabidopsis_hallerig28632.t161.054846.3151beta_vulgarisKMT1232967.488851.1958
g28632arabidopsis_hallerig28632.t163.826950.0338citrullus_lanatusCla97C04G073610.171.245355.8491
g28632arabidopsis_hallerig28632.t164.638350.5747cucumis_sativusKGN5438369.426354.321
g28632arabidopsis_hallerig28632.t165.855353.8878theobroma_cacaoEOY0719572.795259.5665
g28632arabidopsis_hallerig28632.t194.590992.3597arabidopsis_thalianaAT5G01400.195.364793.1152
g28632arabidopsis_hallerig28632.t164.16550.3043cucumis_meloMELO3C025994.2.171.622656.1509
g28632arabidopsis_hallerig28632.t165.720152.6031populus_trichocarpaPotri.016G116600.1.v4.171.628657.3324
g28632arabidopsis_hallerig28632.t184.44979.0399brassica_junceacds.BjuB05g36270S86.316580.7878
g28632arabidopsis_hallerig28632.t184.110979.1075brassica_napusCDY0484085.498380.4124
g28632arabidopsis_hallerig28632.t152.603141.2441malus_domestica_goldenmRNA:MD12G013790069.094154.1741
g28632arabidopsis_hallerig28632.t151.04835.2265marchantia_polymorphaPTQ4135253.622237.0028
g28632arabidopsis_hallerig28632.t165.517253.0088prunus_dulcisVVA1425172.747758.8589
g28632arabidopsis_hallerig28632.t165.449652.9412prunus_persicaONI0372572.672758.7838
g28632arabidopsis_hallerig28632.t156.592343.881cajanus_cajanC.cajan_34639.t68.832253.3717
g28632arabidopsis_hallerig28632.t166.193452.5355glycine_maxKRH6572772.144457.2587
g28632arabidopsis_hallerig28632.t165.787752.1298glycine_maxKRH7596971.544156.6912
g28632arabidopsis_hallerig28632.t19.601087.09939glycine_maxKRG8846170.29751.9802
g28632arabidopsis_hallerig28632.t165.38251.7918lupinus_angustifoliusOIW1766371.895956.9517
g28632arabidopsis_hallerig28632.t165.314451.6565medicago_truncatulaKEH2887772.197357.1002
g28632arabidopsis_hallerig28632.t166.193452.7383phaseolus_vulgarisESW0588471.303756.8099
g28632arabidopsis_hallerig28632.t17.099395.54429pisum_sativumPsat5g138240.1.cds173.943757.7465
g28632arabidopsis_hallerig28632.t165.584952.5355pisum_sativumPsat7g245160.1.cds70.391956.3861
g28632arabidopsis_hallerig28632.t163.488850.5071vigna_radiataVradi09g09630.168.892254.8056
g28632arabidopsis_hallerig28632.t166.26152.4003vigna_unguiculataVigun10g080000.1.v1.271.117656.2409
g28632arabidopsis_hallerig28632.t126.436820.7573vigna_angularisKOM5811268.71753.9543
g28632arabidopsis_hallerig28632.t142.934433.1981manihot_esculentaOAY4148269.780253.956
g28632arabidopsis_hallerig28632.t160.31147.3969capsicum_annuumPHT7266467.575853.1061
g28632arabidopsis_hallerig28632.t159.229246.7884solanum_lycopersicumSolyc09g005330.3.141.146132.5035
g28632arabidopsis_hallerig28632.t160.378645.4361sesamum_indicumSIN_1011081.t67.193450.5643
g28632arabidopsis_hallerig28632.t159.905346.856helianthus_annuusmRNA:HanXRQr2_Chr15g067108166.817552.2624
g28632arabidopsis_hallerig28632.t159.229245.977lactuca_sativacds-PLY72989.167.488452.3883
g28632arabidopsis_hallerig28632.t153.887839.0128lolium_perennecds.KYUSt_chr2.290662.363145.1487
g28632arabidopsis_hallerig28632.t154.428739.2833avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0000371.263.636445.9289
g28632arabidopsis_hallerig28632.t154.428739.2833avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0002839.859.629643.037
g28632arabidopsis_hallerig28632.t154.631539.4861avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0002932.260.569743.7781
g28632arabidopsis_hallerig28632.t154.225839.2157avena_sativa_sangAVESA.00010b.r2.6AG1064120.2.CDS63.399245.8498
g28632arabidopsis_hallerig28632.t154.496339.2833avena_sativa_sangAVESA.00010b.r2.5DG0945410.1.CDS63.715445.9289
g28632arabidopsis_hallerig28632.t154.090639.1481avena_sativa_sangAVESA.00010b.r2.4CG1260320.1.CDS63.241145.7708
g28632arabidopsis_hallerig28632.t147.464534.3475oryza_longistaminataKN538721.1_FGP06562.123944.9558
g28632arabidopsis_hallerig28632.t154.293439.7566oryza_rufipogonORUFI07G28320.164.49847.2289
g28632arabidopsis_hallerig28632.t154.090639.689oryza_brachyanthaOB07G32870.164.360447.2245
g28632arabidopsis_hallerig28632.t152.603137.9986oryza_punctataOPUNC07G25830.163.927746.1791
g28632arabidopsis_hallerig28632.t154.225839.7566oryza_glaberrimaORGLA07G0217800.164.417747.2289
g28632arabidopsis_hallerig28632.t154.293439.0805secale_cerealeSECCE2Rv1G0069300.163.780845.9095
g28632arabidopsis_hallerig28632.t153.887840.027setaria_viridisTKW3667863.50647.1713
g28632arabidopsis_hallerig28632.t154.699139.9594sorghum_bicolorKXG3704265.084547.5463
g28632arabidopsis_hallerig28632.t153.820140.0947setaria_italicaKQL2730263.375847.2134
g28632arabidopsis_hallerig28632.t154.293438.9452triticum_aestivumTraesCS2D02G082200.363.780845.7506
g28632arabidopsis_hallerig28632.t154.496339.0128triticum_aestivumTraesCS2B02G098800.363.816345.6849
g28632arabidopsis_hallerig28632.t154.361138.8776triticum_aestivumTraesCS2A02G084200.163.860245.6712
g28632arabidopsis_hallerig28632.t154.361139.5538zea_maysZm00001eb331590_P00264.734347.1014
g28632arabidopsis_hallerig28632.t155.983841.2441ananas_comosusAco011048.1.mrna160.218244.3636
g28632arabidopsis_hallerig28632.t118.796514.6045ananas_comosusAco029452.1.mrna175.543558.6957
g28632arabidopsis_hallerig28632.t145.368532.9277asparagus_officinalisONK6250461.843344.8848
g28632arabidopsis_hallerig28632.t154.699139.1481triticum_turgidumTRITD2Bv1G026090.763.006245.0935
g28632arabidopsis_hallerig28632.t154.361138.8776triticum_turgidumTRITD2Av1G019750.763.45745.3828
g28632arabidopsis_hallerig28632.t128.465213.9283caenorhabditis_elegansF25G6.2.136.832918.0227
g28632arabidopsis_hallerig28632.t131.102116.5652drosophila_melanogasterFBpp007837239.48521.03
g28632arabidopsis_hallerig28632.t158.282644.0838amborella_trichopodaERN0524164.958549.1334
g28632arabidopsis_hallerig28632.t164.50350.9804corylus_avellanaCav09g16020.t168.930654.4798
g28632arabidopsis_hallerig28632.t166.801954.0906gossypium_raimondiiKJB1706673.896859.8355
g28632arabidopsis_hallerig28632.t154.225839.2833brachypodium_distachyonKQK1447663.955346.3317
g28632arabidopsis_hallerig28632.t134.956119.7431homo_sapiensENSP0000024593440.580822.9199
g28632arabidopsis_hallerig28632.t158.485545.9094fraxinus_excelsiorFRAEX38873_v2_000163750.2.cds68.869454.0605
g28632arabidopsis_hallerig28632.t152.400338.1339eragrostis_curvulaTVU3710063.31746.0784
g28632arabidopsis_hallerig28632.t154.293439.8242oryza_indicaBGIOSGA026449-PA64.49847.3092
g28632arabidopsis_hallerig28632.t163.150850.5071vitis_viniferaVitvi08g00644_P00170.120156.0811
g28632arabidopsis_hallerig28632.t161.1948.4787nicotiana_attenuataOIT2263768.147653.991
g28632arabidopsis_hallerig28632.t160.446245.7066coffea_canephoraCDP0647964.923749.0922
g28632arabidopsis_hallerig28632.t162.542348.5463ipomoea_trilobaitb09g10090.t149.838438.6853
g28632arabidopsis_hallerig28632.t152.400337.593triticum_urartuTuG1812G0200000867.01.T0264.799346.4883
g28632arabidopsis_hallerig28632.t150.033836.5112oryza_meridionalisOMERI07G23860.162.447345.5696
g28632arabidopsis_hallerig28632.t163.691751.6565prunus_aviumPav_sc0001925.1_g210.1.mk:mrna70.561857.2285
g28632arabidopsis_hallerig28632.t154.225839.7566oryza_sativaOs07t0693900-0164.417747.2289
g28632arabidopsis_hallerig28632.t150.912840.0947pistacia_veracds-EVM0030960.169.981455.1115
g28632arabidopsis_hallerig28632.t166.869553.144quercus_subercds-POF16199.173.096858.0931
g28632arabidopsis_hallerig28632.t132.251517.1062galdieria_sulphurariaEME2648240.151521.2963
g28632arabidopsis_hallerig28632.t130.628816.4976ciona_savignyiENSCSAVP0000000867944.195123.8049
g28632arabidopsis_hallerig28632.t112.50859.26302chenopodium_quinoaAUR62043836-RA:cds66.78749.4585
g28632arabidopsis_hallerig28632.t130.358422.5828dioscorea_rotundataDRNTG_29332.159.156844.0053
g28632arabidopsis_hallerig28632.t166.328654.2258citrus_clementinaESR4263673.926160.4371
g28632arabidopsis_hallerig28632.t166.328653.2116juglans_regiacds.Jr03_25680_p173.263658.7752
g28632arabidopsis_hallerig28632.t131.440217.6471ostreococcus_lucimarinusABO9652742.157823.6627
g28632arabidopsis_hallerig28632.t164.232650.8452actinidia_chinensisPSS3467071.752356.7976
g28632arabidopsis_hallerig28632.t153.617339.3509leersia_perrieriLPERR07G24120.164.419247.2786
g28632arabidopsis_hallerig28632.t154.293438.9452aegilops_tauschiiAET2Gv20157200.363.780845.7506
g28632arabidopsis_hallerig28632.t157.944643.6105musa_acuminataMa06_p17130.164.484648.5327
g28632arabidopsis_hallerig28632.t144.962832.2515selaginella_moellendorffiiEFJ2375156.983740.874
g28632arabidopsis_hallerig28632.t154.225840.2975panicum_halliiPUZ7358363.904447.49
g28632arabidopsis_hallerig28632.t186.342181.0007arabis_alpinaKFK2464888.190682.7348
g28632arabidopsis_hallerig28632.t167.410453.8878quercus_lobataQL07p035631:mrna74.126459.2565
g28632arabidopsis_hallerig28632.t167.004753.6173quercus_lobataQL07p019818:mrna73.900159.135
g28632arabidopsis_hallerig28632.t186.54581.9473eutrema_salsugineumESQ4007189.761684.993
g28632arabidopsis_hallerig28632.t162.339446.856kalanchoe_fedtschenkoiKaladp0550s0074.1.v1.165.021248.8717
g28632arabidopsis_hallerig28632.t154.631539.3509hordeum_vulgareHORVU.MOREX.r3.2HG0107980.164.177946.2272
g28632arabidopsis_hallerig28632.t164.300251.4537rosa_chinensisPRQ4293970.758956.622
g28632arabidopsis_hallerig28632.t152.670738.4719oryza_barthiiOBART07G27350.162.3245.52
g28632arabidopsis_hallerig28632.t144.151528.5328chara_brauniiGBG6414119.704312.7339
g28632arabidopsis_hallerig28632.t161.730947.6673corymbia_citriodoracds-KAF8038513.170.284854.2725
g28632arabidopsis_hallerig28632.t183.90878.8371brassica_rapa_ro18A02p000240.1_BraROA.184.652179.5362
g28632arabidopsis_hallerig28632.t162.06947.9378olea_europaeaOE9A090132C163.661649.1678
g28632arabidopsis_hallerig28632.t149.087236.5112eucalyptus_grandisKCW8610767.472150.1859
g28632arabidopsis_hallerig28632.t128.938516.3624cyanidioschyzon_merolaeCMF174CT31.656817.8994
g28632arabidopsis_hallerig28632.t191.95488.4381camelina_sativaCsa20g001690.193.406689.8352
g28632arabidopsis_hallerig28632.t191.548387.9648camelina_sativaCsa08g063080.193.962590.2845
g28632arabidopsis_hallerig28632.t190.669487.1535camelina_sativaCsa13g001480.192.674589.0809
g28632arabidopsis_hallerig28632.t154.563942.7316daucus_carotaKZM9722967.815153.1092
g28632arabidopsis_hallerig28632.t147.667334.9561digitaria_exilisDexi2B01G0036530.1:cds63.513546.5766
g28632arabidopsis_hallerig28632.t147.667335.0237digitaria_exilisDexi2A01G0037510.1:cds63.456346.6247
g28632arabidopsis_hallerig28632.t154.428739.689eragrostis_tefEt_5A_040577.CDS64.297146.885
g28632arabidopsis_hallerig28632.t154.158239.689eragrostis_tefEt_5B_043390.CDS64.234247.073
g28632arabidopsis_hallerig28632.t141.311730.0879triticum_dicoccoidesTRIDC2AG009370.264.248246.7929
g28632arabidopsis_hallerig28632.t153.346938.3367triticum_dicoccoidesTRIDC2BG011150.265.045346.7436
g28632arabidopsis_hallerig28632.t197.633596.2813arabidopsis_lyratafgenesh2_kg.6__70__AT5G01400.197.501796.1513
g28632arabidopsis_hallerig28632.t156.321842.0554nymphaea_colorataNC2G0053400.1:cds63.539347.4447
g28632arabidopsis_hallerig28632.t150.507136.8492echinochloa_crusgalliscaffold992.2.cds63.19846.1083
g28632arabidopsis_hallerig28632.t154.090639.3509echinochloa_crusgalliscaffold1.1833.cds63.795946.4115
g28632arabidopsis_hallerig28632.t153.887839.3509echinochloa_crusgalliscaffold2.13.cds63.862246.6346
g28632arabidopsis_hallerig28632.t183.840478.4314brassica_oleraceaBo2g001270.185.28279.7799
g28632arabidopsis_hallerig28632.t165.720153.4821corchorus_capsularisOMO8506273.804160.0607
g28632arabidopsis_hallerig28632.t146.991233.9419oryza_nivaraONIVA07G27140.260.645743.8045
g28632arabidopsis_hallerig28632.t19.803927.43746trifolium_pratenseTp57577_TGAC_v2_mRNA740968.075151.6432
g28632arabidopsis_hallerig28632.t156.727543.881cynara_cardunculusKVH9487366.01151.0622

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression