RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	g27226	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2229 bases	Strand	Plus strand
Position	FJVB01000194.1 : 39076 - 41304	RNA binding domain	Suf
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
g27226	Suf	PF05843	5.3e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	g27226.t1	1788	490aa	g27226.t1

Gene Model

Click here to download g27226's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download g27226's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g27226	arabidopsis_halleri	g25462.t1	42.9664	40.367	arabidopsis_halleri	g27226.t1	57.3469	53.8776
g27226	arabidopsis_halleri	g29194.t1	40.305	33.0065	arabidopsis_halleri	g27226.t1	75.5102	61.8367
g27226	arabidopsis_halleri	g16221.t1	21.9325	10.2761	arabidopsis_halleri	g27226.t1	29.1837	13.6735
g27226	arabidopsis_halleri	g08996.t1.cds1	14.7348	6.4833	arabidopsis_halleri	g27226.t1	30.6122	13.4694
g27226	arabidopsis_halleri	g02733.t1.cds1	14.8803	6.9719	arabidopsis_halleri	g27226.t1	29.1837	13.6735
g27226	arabidopsis_halleri	g28539.t1	21.733	11.5057	arabidopsis_halleri	g27226.t1	31.2245	16.5306
g27226	arabidopsis_halleri	g14917.t1.cds1	27.5482	14.876	arabidopsis_halleri	g27226.t1	20.4082	11.0204
g27226	arabidopsis_halleri	g14918.t1.cds1	12.963	5.8642	arabidopsis_halleri	g27226.t1	8.57143	3.87755
g27226	arabidopsis_halleri	g05695.t1	22.1113	11.2696	arabidopsis_halleri	g27226.t1	31.6327	16.1224

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g27226	arabidopsis_halleri	g27226.t1	50.6122	32.0408	chondrus_crispus	CDF33252	25.5407	16.1689
g27226	arabidopsis_halleri	g27226.t1	60	42.449	chlamydomonas_reinhardtii	PNW75122	31.7838	22.4865
g27226	arabidopsis_halleri	g27226.t1	67.3469	54.6939	brassica_juncea	cds.BjuB04g36770S	46.0251	37.378
g27226	arabidopsis_halleri	g27226.t1	53.8776	35.102	caenorhabditis_elegans	C50F2.3.1	30.8772	20.117
g27226	arabidopsis_halleri	g27226.t1	61.2245	41.4286	drosophila_melanogaster	FBpp0086749	33.9751	22.9898
g27226	arabidopsis_halleri	g27226.t1	27.1429	11.6327	drosophila_melanogaster	FBpp0312391	14.2857	6.12245
g27226	arabidopsis_halleri	g27226.t1	61.4286	43.4694	homo_sapiens	ENSP00000351137	35.2047	24.9123
g27226	arabidopsis_halleri	g27226.t1	29.7959	12.8571	homo_sapiens	ENSP00000266079	15.5154	6.69501
g27226	arabidopsis_halleri	g27226.t1	53.8776	33.8776	galdieria_sulphuraria	EME27500	29.1713	18.3425
g27226	arabidopsis_halleri	g27226.t1	59.5918	42.449	ciona_savignyi	ENSCSAVP00000009363	34.3934	24.4994
g27226	arabidopsis_halleri	g27226.t1	60.2041	39.1837	ostreococcus_lucimarinus	ABP00725	33.7915	21.9931
g27226	arabidopsis_halleri	g27226.t1	42.8571	21.8367	saccharomyces_cerevisiae	YDR416W	24.447	12.4563
g27226	arabidopsis_halleri	g27226.t1	66.9388	61.8367	camelina_sativa	Csa05g044670.1.cds1	81.592	75.3731
g27226	arabidopsis_halleri	g27226.t1	66.7347	53.8776	brassica_oleracea	Bo9g043710.1	47.1861	38.0952
g27226	arabidopsis_halleri	g27226.t1	66.7347	53.8776	brassica_oleracea	Bo9g043680.1	47.2543	38.1503
g27226	arabidopsis_halleri	g27226.t1	66.7347	54.0816	brassica_oleracea	Bo02020s010.1	47.2543	38.2948

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression