Description

Ensembl ID g27105 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 4027 bases Strand Plus strand
Position FJVB01000191.1 : 76286 - 80312 RNA binding domain tRNA-synt_2c , tRNA_SAD , DHHA1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g27105 tRNA-synt_2c PF01411 4.5e-198 1
g27105 tRNA_SAD PF07973 1.2e-18 2
g27105 DHHA1 PF02272 3.5e-22 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g27105.t1 3105 966aa g27105.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g27105arabidopsis_hallerig06551.t142.968824.2188arabidopsis_hallerig27105.t111.38726.41822
g27105arabidopsis_hallerig15307.t150.890132.4607arabidopsis_hallerig27105.t150.310632.0911
g27105arabidopsis_hallerig25416.t186.034981.5461arabidopsis_hallerig27105.t135.714333.8509

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g27105arabidopsis_hallerig27105.t158.488645.2381chondrus_crispusCDF3463165.317950.5202
g27105arabidopsis_hallerig27105.t163.664651.6563chlamydomonas_reinhardtiiPNW7984364.805152.5817
g27105arabidopsis_hallerig27105.t120.393417.7019papaver_somniferumRZC4855974.621264.7727
g27105arabidopsis_hallerig27105.t183.747473.913cannabis_sativa_femalecds.evm.model.01.81258.538351.6643
g27105arabidopsis_hallerig27105.t174.741260.0414physcomitrium_patensPp3c2_4380V3.371.698157.5968
g27105arabidopsis_hallerig27105.t184.47273.913ficus_caricaFCD_00007135-RA:cds81.437171.2575
g27105arabidopsis_hallerig27105.t182.194671.8427ficus_caricaFCD_00000009-RA:cds81.519571.2526
g27105arabidopsis_hallerig27105.t181.159469.6687beta_vulgarisKMT0128579.674868.3943
g27105arabidopsis_hallerig27105.t182.608771.0145citrullus_lanatusCla97C02G036830.179.868.6
g27105arabidopsis_hallerig27105.t18.695656.10766cucumis_sativusKGN4671546.927432.9609
g27105arabidopsis_hallerig27105.t175.879964.9068cucumis_sativusKGN4671781.899470.0559
g27105arabidopsis_hallerig27105.t182.712271.3251theobroma_cacaoEOX9751179.9868.969
g27105arabidopsis_hallerig27105.t194.61792.3395arabidopsis_thalianaAT5G22800.291.126688.9332
g27105arabidopsis_hallerig27105.t171.014561.3872cucumis_meloMELO3C013645.2.184.171872.7607
g27105arabidopsis_hallerig27105.t183.747472.8778populus_trichocarpaPotri.009G141300.6.v4.181.062170.5411
g27105arabidopsis_hallerig27105.t192.132586.4389brassica_junceacds.BjuA02g33930S91.847386.1713
g27105arabidopsis_hallerig27105.t192.546686.4389brassica_napusCDY5028592.260186.1713
g27105arabidopsis_hallerig27105.t192.546687.06brassica_napusCDY0916892.260186.7905
g27105arabidopsis_hallerig27105.t175.879964.2857malus_domestica_goldenmRNA:MD05G010800076.673664.9582
g27105arabidopsis_hallerig27105.t141.925535.5072malus_domestica_goldenmRNA:MD10G010970085.08472.0588
g27105arabidopsis_hallerig27105.t136.64630.9524malus_domestica_goldenmRNA:MD10G010960074.213862.6834
g27105arabidopsis_hallerig27105.t175.983465.4244malus_domestica_goldenmRNA:MD10G010980080.83769.6035
g27105arabidopsis_hallerig27105.t173.084958.7992marchantia_polymorphaPTQ3619372.708558.4964
g27105arabidopsis_hallerig27105.t182.815771.4286prunus_dulcisVVA3001179.920168.9311
g27105arabidopsis_hallerig27105.t182.815770.7039prunus_persicaONH9241379.920168.2318
g27105arabidopsis_hallerig27105.t174.741264.2857cajanus_cajanC.cajan_33932.t83.953572.2093
g27105arabidopsis_hallerig27105.t180.020769.0476glycine_maxKRH5133878.877568.0612
g27105arabidopsis_hallerig27105.t180.020768.323glycine_maxKRH6064280.2768.5358
g27105arabidopsis_hallerig27105.t180.952468.9441lupinus_angustifoliusOIV9628279.633467.8208
g27105arabidopsis_hallerig27105.t179.813767.8054medicago_truncatulaAES7434078.673566.8367
g27105arabidopsis_hallerig27105.t180.434868.8406phaseolus_vulgarisESW0930779.529268.0655
g27105arabidopsis_hallerig27105.t174.016659.8344phaseolus_vulgarisESW1627154.915544.3932
g27105arabidopsis_hallerig27105.t163.043552.795pisum_sativumPsat5g000880.1.cds75.371363.1188
g27105arabidopsis_hallerig27105.t120.496917.0807pisum_sativumPsat5g000840.1.cds79.518166.2651
g27105arabidopsis_hallerig27105.t178.467966.9772vigna_radiataVradi05g15810.179.288767.6778
g27105arabidopsis_hallerig27105.t181.159469.0476vigna_unguiculataVigun09g277900.3.v1.276.712365.2642
g27105arabidopsis_hallerig27105.t178.985568.323vigna_angularisKOM4238684.589873.1707
g27105arabidopsis_hallerig27105.t184.161574.2236manihot_esculentaOAY5224581.218871.6284
g27105arabidopsis_hallerig27105.t142.443133.1263capsicum_annuumPHT6595078.544161.3027
g27105arabidopsis_hallerig27105.t113.04359.42029capsicum_annuumPHT8339566.315847.8947
g27105arabidopsis_hallerig27105.t180.848967.5983capsicum_annuumPHT6259779.208966.2272
g27105arabidopsis_hallerig27105.t180.745367.3913solanum_lycopersicumSolyc01g111990.3.179.027465.9574
g27105arabidopsis_hallerig27105.t180.124268.53sesamum_indicumSIN_1014603.t78.49967.14
g27105arabidopsis_hallerig27105.t180.848967.9089helianthus_annuusmRNA:HanXRQr2_Chr17g081215180.598667.6987
g27105arabidopsis_hallerig27105.t178.467966.0455lactuca_sativacds-PLY67821.173.735462.0623
g27105arabidopsis_hallerig27105.t178.157365.1139lolium_perennecds.KYUSt_chr7.3224077.754964.7786
g27105arabidopsis_hallerig27105.t179.296166.0455avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0001219.476.143163.4195
g27105arabidopsis_hallerig27105.t178.985566.2526avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0000228.476.071863.8086
g27105arabidopsis_hallerig27105.t178.467965.8385avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0000133.178.063965.4995
g27105arabidopsis_hallerig27105.t178.467965.8385avena_sativa_sangAVESA.00010b.r2.UnG1403290.1.CDS78.063965.4995
g27105arabidopsis_hallerig27105.t178.260965.8385avena_sativa_sangAVESA.00010b.r2.7DG1396430.1.CDS77.857965.4995
g27105arabidopsis_hallerig27105.t178.571465.6315avena_sativa_sangAVESA.00010b.r2.7AG1211340.1.CDS78.166865.2935
g27105arabidopsis_hallerig27105.t180.227767.5983oryza_longistaminataKN539129.1_FGP00376.58164.5257
g27105arabidopsis_hallerig27105.t179.399667.0807oryza_rufipogonORUFI06G09460.279.564367.2199
g27105arabidopsis_hallerig27105.t179.296166.7702oryza_brachyanthaOB06G18540.179.791767.1875
g27105arabidopsis_hallerig27105.t180.331367.3913oryza_punctataOPUNC06G08850.478.14765.5589
g27105arabidopsis_hallerig27105.t178.778566.6667oryza_glaberrimaORGLA06G0087500.181.652469.0987
g27105arabidopsis_hallerig27105.t178.88266.4596secale_cerealeSECCE4Rv1G0250550.177.596765.3768
g27105arabidopsis_hallerig27105.t180.745368.323setaria_viridisTKW2072678.947466.8016
g27105arabidopsis_hallerig27105.t180.434867.5983sorghum_bicolorKXG1970278.643766.0931
g27105arabidopsis_hallerig27105.t174.016663.4576setaria_italicaKQL1012983.139571.2791
g27105arabidopsis_hallerig27105.t178.985566.6667triticum_aestivumTraesCS7B02G103200.178.417366.187
g27105arabidopsis_hallerig27105.t178.674966.0455triticum_aestivumTraesCS7A02G237000.177.55165.102
g27105arabidopsis_hallerig27105.t178.778566.3561triticum_aestivumTraesCS7D02G199300.177.494965.2749
g27105arabidopsis_hallerig27105.t180.020766.6667zea_maysZm00001eb371640_P00176.534763.7624
g27105arabidopsis_hallerig27105.t180.331368.8406ananas_comosusAco002940.1.mrna179.264667.9265
g27105arabidopsis_hallerig27105.t17.660466.3147asparagus_officinalisONK6589770.476258.0952
g27105arabidopsis_hallerig27105.t177.329265.3209triticum_turgidumTRITD7Av1G067030.273.379261.9843
g27105arabidopsis_hallerig27105.t166.045556.0041triticum_turgidumTRITD7Bv1G042780.180.861868.5678
g27105arabidopsis_hallerig27105.t141.718425.9834drosophila_melanogasterFBpp007687139.822124.8024
g27105arabidopsis_hallerig27105.t178.053865.2174amborella_trichopodaERN1837176.315863.7652
g27105arabidopsis_hallerig27105.t183.126373.8095corylus_avellanaCav01g21240.t180.703571.6583
g27105arabidopsis_hallerig27105.t182.401769.9793gossypium_raimondiiKJB3272179.679767.6677
g27105arabidopsis_hallerig27105.t178.467965.735brachypodium_distachyonKQK1875578.063965.3965
g27105arabidopsis_hallerig27105.t143.374728.0538homo_sapiensENSP0000024457142.538127.5127
g27105arabidopsis_hallerig27105.t181.987669.7723fraxinus_excelsiorFRAEX38873_v2_000123580.1.cds79.678167.8068
g27105arabidopsis_hallerig27105.t180.124267.7019oryza_glumipatulaOGLUM06G09830.377.710865.6627
g27105arabidopsis_hallerig27105.t16.211184.45135eragrostis_curvulaTVU1184365.934147.2527
g27105arabidopsis_hallerig27105.t180.020767.4948oryza_indicaBGIOSGA022618-PA77.610465.4618
g27105arabidopsis_hallerig27105.t183.540473.1884vitis_viniferaVitvi03g00210_P00180.218770.2783
g27105arabidopsis_hallerig27105.t180.745368.2195nicotiana_attenuataOIT0527878.708466.4985
g27105arabidopsis_hallerig27105.t181.884168.323coffea_canephoraCDP1452179.818466.5994
g27105arabidopsis_hallerig27105.t180.538367.7019ipomoea_trilobaitb10g25890.t275.902463.8049
g27105arabidopsis_hallerig27105.t178.88266.2526triticum_urartuTuG1812G0700002530.01.T0177.755165.3061
g27105arabidopsis_hallerig27105.t180.020767.4948oryza_meridionalisOMERI06G10790.277.923465.7258
g27105arabidopsis_hallerig27105.t182.505270.6004prunus_aviumPav_sc0000244.1_g030.1.mk:mrna82.676370.7469
g27105arabidopsis_hallerig27105.t120.289916.9772oryza_sativaOs06t0245800-0168.531557.3427
g27105arabidopsis_hallerig27105.t182.815771.7391pistacia_veracds-EVM0015203.181.466470.5703
g27105arabidopsis_hallerig27105.t182.298171.6356quercus_subercds-POE95210.148.357742.0925
g27105arabidopsis_hallerig27105.t180.538369.3582chenopodium_quinoaAUR62012953-RA:cds82.76671.2766
g27105arabidopsis_hallerig27105.t117.080713.354dioscorea_rotundataDRNTG_30724.175.342558.9041
g27105arabidopsis_hallerig27105.t146.376838.5093dioscorea_rotundataDRNTG_34298.177.374864.2487
g27105arabidopsis_hallerig27105.t115.010412.2153dioscorea_rotundataDRNTG_32472.162.550.8621
g27105arabidopsis_hallerig27105.t169.772361.0766citrus_clementinaESR3574980.815370.7434
g27105arabidopsis_hallerig27105.t182.919372.7743juglans_regiacds.Jr13_10160_p180.0270.2298
g27105arabidopsis_hallerig27105.t164.389250.7246ostreococcus_lucimarinusABO9720668.653454.0839
g27105arabidopsis_hallerig27105.t183.436971.9462actinidia_chinensisPSS2179780.519569.4306
g27105arabidopsis_hallerig27105.t178.88266.6667leersia_perrieriLPERR06G08230.178.314566.187
g27105arabidopsis_hallerig27105.t178.467966.1491aegilops_tauschiiAET7Gv20502300.478.305866.0124
g27105arabidopsis_hallerig27105.t179.192566.8737musa_acuminataMa07_p12010.176.653364.7295
g27105arabidopsis_hallerig27105.t172.670857.2464selaginella_moellendorffiiEFJ1648375.160659.2077
g27105arabidopsis_hallerig27105.t171.635656.8323selaginella_moellendorffiiEFJ0559375.217459.6739
g27105arabidopsis_hallerig27105.t180.331367.9089panicum_halliiPUZ6156678.542566.3968
g27105arabidopsis_hallerig27105.t193.995989.7516arabis_alpinaKFK2761793.223889.0144
g27105arabidopsis_hallerig27105.t182.815772.7743quercus_lobataQL11p055386:mrna80.160370.4409
g27105arabidopsis_hallerig27105.t182.091172.1532quercus_lobataQL11p055697:mrna79.538669.9097
g27105arabidopsis_hallerig27105.t194.202989.8551eutrema_salsugineumESQ4224193.237788.9344
g27105arabidopsis_hallerig27105.t182.608769.7723kalanchoe_fedtschenkoiKaladp0092s0047.1.v1.179.959967.5351
g27105arabidopsis_hallerig27105.t178.571466.0455hordeum_vulgareHORVU.MOREX.r3.7HG0668470.177.3765.0357
g27105arabidopsis_hallerig27105.t182.919371.0145rosa_chinensisPRQ2508680.168.6
g27105arabidopsis_hallerig27105.t140.993834.6791rosa_chinensisPRQ2508782.157769.5021
g27105arabidopsis_hallerig27105.t180.020767.4948oryza_barthiiOBART06G09250.277.610465.4618
g27105arabidopsis_hallerig27105.t165.631553.0021chara_brauniiGBG6284525.824820.8554
g27105arabidopsis_hallerig27105.t181.987671.7391corymbia_citriodoracds-KAF8013171.180.406170.3553
g27105arabidopsis_hallerig27105.t187.267181.7805brassica_rapa_ro18A02p011370.1_BraROA.191.630485.8696
g27105arabidopsis_hallerig27105.t181.987670.2899olea_europaeaOE9A032790C176.893265.9223
g27105arabidopsis_hallerig27105.t181.884171.8427eucalyptus_grandisKCW5562780.304670.4569
g27105arabidopsis_hallerig27105.t163.35445.4451cyanidioschyzon_merolaeCMG111CT59.359842.58
g27105arabidopsis_hallerig27105.t191.511488.0952camelina_sativaCsa13g027360.192.954889.4848
g27105arabidopsis_hallerig27105.t184.886182.2981camelina_sativaCsa20g037580.183.248780.7107
g27105arabidopsis_hallerig27105.t195.859293.1677camelina_sativaCsa09g011300.194.586391.9305
g27105arabidopsis_hallerig27105.t165.320958.3851camelina_sativaCsa20g038940.165.729258.75
g27105arabidopsis_hallerig27105.t195.962792.8571camelina_sativaCsa06g006470.194.688591.6241
g27105arabidopsis_hallerig27105.t196.273393.4783camelina_sativaCsa04g012300.195.09292.3313
g27105arabidopsis_hallerig27105.t195.031191.8219camelina_sativaCsa08g016110.193.86590.6953
g27105arabidopsis_hallerig27105.t180.641868.8406daucus_carotaKZM8980283.673571.4286
g27105arabidopsis_hallerig27105.t180.227767.4948digitaria_exilisDexi4A01G0009960.1:cds77.811265.4618
g27105arabidopsis_hallerig27105.t179.917267.8054digitaria_exilisDexi4B01G0010310.1:cds78.936666.9734
g27105arabidopsis_hallerig27105.t180.848968.323eragrostis_tefEt_2A_017814.CDS79.208966.9371
g27105arabidopsis_hallerig27105.t180.848968.8406eragrostis_tefEt_2B_021821.CDS79.208967.4442
g27105arabidopsis_hallerig27105.t178.778565.942triticum_dicoccoidesTRIDC7AG024750.277.102364.539
g27105arabidopsis_hallerig27105.t179.503166.8737triticum_dicoccoidesTRIDC7BG015260.276.190564.0873
g27105arabidopsis_hallerig27105.t197.826196.7909arabidopsis_lyratascaffold_602336.196.625895.6033
g27105arabidopsis_hallerig27105.t180.227767.8054saccharum_spontaneumSspon.08G0010810-3C-mRNA-1:cds78.282866.1616
g27105arabidopsis_hallerig27105.t177.225764.1822nymphaea_colorataNC8G0211860.1:cds73.642661.2043
g27105arabidopsis_hallerig27105.t180.538368.1159echinochloa_crusgalliscaffold30.129.cds78.744966.5992
g27105arabidopsis_hallerig27105.t180.227767.7019echinochloa_crusgalliscaffold44.360.cds78.520866.2614
g27105arabidopsis_hallerig27105.t180.020768.0124echinochloa_crusgalliscaffold249.4.cds78.238966.498
g27105arabidopsis_hallerig27105.t192.443186.1284brassica_oleraceaBo2g024420.192.156985.8617
g27105arabidopsis_hallerig27105.t183.333371.4286corchorus_capsularisOMO7999480.580669.0691
g27105arabidopsis_hallerig27105.t180.124267.4948oryza_nivaraONIVA06G10690.377.710865.4618
g27105arabidopsis_hallerig27105.t180.020767.3913trifolium_pratenseTp57577_TGAC_v2_mRNA3988478.797166.3609
g27105arabidopsis_hallerig27105.t167.391356.6253cynara_cardunculusKVI0403078.339365.8243

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression