RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	g25916	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1997 bases	Strand	Plus strand
Position	FJVB01000164.1 : 209618 - 211614	RNA binding domain	Suf
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
g25916	Suf	PF05843	1.5e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	g25916.t1	1034	271aa	g25916.t1

Gene Model

Click here to download g25916's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download g25916's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g25916

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g25916	arabidopsis_halleri	g25916.t1	15.1292	13.2841	ficus_carica	FCD_00033540-RA:cds	71.9298	63.1579
g25916	arabidopsis_halleri	g25916.t1	66.4207	49.0775	capsicum_annuum	PHT63894	48	35.4667
g25916	arabidopsis_halleri	g25916.t1	59.0406	44.2804	quercus_lobata	QL02p036387:mrna	61.0687	45.8015
g25916	arabidopsis_halleri	g25916.t1	62.7306	46.4945	quercus_lobata	QL02p036851:mrna	44.9735	33.3333
g25916	arabidopsis_halleri	g25916.t1	48.7085	38.3764	trifolium_pratense	Tp57577_TGAC_v2_mRNA41273	67.6923	53.3333

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression