Description

Ensembl ID g25915 Gene ID Accession -
Symbol Alias - Full Name Cleavage stimulation factor subunit 77
Status Confidence Length 4312 bases Strand Plus strand
Position FJVB01000164.1 : 205228 - 209539 RNA binding domain Suf
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g25915 Suf PF05843 5.2e-51 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g25915.t1 1831 441aa g25915.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25915

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25915arabidopsis_hallerig25915.t152.834532.1995chondrus_crispusCDF4076132.816920
g25915arabidopsis_hallerig25915.t152.38135.3741chlamydomonas_reinhardtiiPNW7488630.117320.339
g25915arabidopsis_hallerig25915.t183.2270.2948papaver_somniferumRZC5123954.45145.9941
g25915arabidopsis_hallerig25915.t182.993268.9342papaver_somniferumRZC5055048.412740.2116
g25915arabidopsis_hallerig25915.t182.993269.161papaver_somniferumRZC5031449.593541.3279
g25915arabidopsis_hallerig25915.t187.528375.5102papaver_somniferumRZC7907248.984842.2589
g25915arabidopsis_hallerig25915.t168.25455.7823papaver_somniferumRZC5099945.744737.386
g25915arabidopsis_hallerig25915.t187.074874.6032papaver_somniferumRZC8337748.73141.7513
g25915arabidopsis_hallerig25915.t178.004561.4512physcomitrium_patensPp3c3_19050V3.236.595728.8298
g25915arabidopsis_hallerig25915.t180.725669.8413ficus_caricaFCD_00033539-RA:cds79.642168.9038
g25915arabidopsis_hallerig25915.t187.755175.737beta_vulgarisKMT1102951.807244.7122
g25915arabidopsis_hallerig25915.t189.342475.5102citrullus_lanatusCla97C04G071390.150.063542.3126
g25915arabidopsis_hallerig25915.t180.498967.8005cucumis_sativusKGN5490850.932642.8981
g25915arabidopsis_hallerig25915.t187.755177.7778theobroma_cacaoEOY1941650.854145.0723
g25915arabidopsis_hallerig25915.t198.412796.5986arabidopsis_thalianaAT1G17760.159.128158.0381
g25915arabidopsis_hallerig25915.t189.795975.2834cucumis_meloMELO3C008873.2.157.225447.9769
g25915arabidopsis_hallerig25915.t185.487573.0159populus_trichocarpaPotri.003G106200.1.v4.149.024741.8726
g25915arabidopsis_hallerig25915.t195.918492.2903brassica_junceacds.BjuA08g25580S57.472855.2989
g25915arabidopsis_hallerig25915.t195.918492.2903brassica_junceacds.BjuB03g52920S57.55155.3741
g25915arabidopsis_hallerig25915.t196.145192.2903brassica_napusCDX8389256.684554.4118
g25915arabidopsis_hallerig25915.t195.918492.2903brassica_napusCDX9675358.264556.0606
g25915arabidopsis_hallerig25915.t188.662177.3243malus_domestica_goldenmRNA:MD09G000000073.084163.7383
g25915arabidopsis_hallerig25915.t178.911663.9456marchantia_polymorphaPTQ5061441.577133.6918
g25915arabidopsis_hallerig25915.t189.569277.3243prunus_dulcisVVA2570151.769344.692
g25915arabidopsis_hallerig25915.t189.342477.3243prunus_persicaONI3218551.638344.692
g25915arabidopsis_hallerig25915.t157.823143.5374cajanus_cajanC.cajan_39610.t37.010227.8665
g25915arabidopsis_hallerig25915.t190.022778.4581glycine_maxKRG9413153.721246.82
g25915arabidopsis_hallerig25915.t145.578239.6825lupinus_angustifoliusOIW1226183.057972.314
g25915arabidopsis_hallerig25915.t179.591866.2132lupinus_angustifoliusOIW1226042.597135.4369
g25915arabidopsis_hallerig25915.t190.022778.2313medicago_truncatulaAES7513855.062447.8502
g25915arabidopsis_hallerig25915.t190.022778.6848phaseolus_vulgarisESW2348453.79447.019
g25915arabidopsis_hallerig25915.t170.975160.9977pisum_sativumPsat2g043000.1.cds50.647243.5275
g25915arabidopsis_hallerig25915.t190.022777.3243pisum_sativumPsat1g085480.1.cds55.062447.2954
g25915arabidopsis_hallerig25915.t185.487572.3356vigna_radiataVradi01g08080.146.031738.9499
g25915arabidopsis_hallerig25915.t189.569277.3243vigna_unguiculataVigun04g077000.1.v1.253.52346.206
g25915arabidopsis_hallerig25915.t189.795977.7778vigna_angularisKOM5631553.804346.6033
g25915arabidopsis_hallerig25915.t167.573759.6372manihot_esculentaOAY3202964.642157.0499
g25915arabidopsis_hallerig25915.t136.961530.6122capsicum_annuumPHT6389564.426953.3597
g25915arabidopsis_hallerig25915.t188.662175.737solanum_lycopersicumSolyc10g050540.2.152.766545.0742
g25915arabidopsis_hallerig25915.t160.090749.6599sesamum_indicumSIN_1004595.t45.532637.6289
g25915arabidopsis_hallerig25915.t186.167873.4694helianthus_annuusmRNA:HanXRQr2_Chr03g011057151.351443.7838
g25915arabidopsis_hallerig25915.t187.755173.9229lactuca_sativacds-PLY81034.157.589348.5119
g25915arabidopsis_hallerig25915.t184.353768.4807lolium_perennecds.KYUSt_chr5.703653.525243.4532
g25915arabidopsis_hallerig25915.t184.353767.5737avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0000489.1250.750340.6548
g25915arabidopsis_hallerig25915.t184.353768.254avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000823.446.67537.7666
g25915arabidopsis_hallerig25915.t184.12768.0272avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0001246.546.491237.594
g25915arabidopsis_hallerig25915.t184.353768.0272avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0000653.150.750340.9277
g25915arabidopsis_hallerig25915.t184.353767.8005avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0000057.150.750340.7913
g25915arabidopsis_hallerig25915.t144.444435.6009avena_sativa_sangAVESA.00010b.r2.3AG0414050.1.CDS83.404366.8085
g25915arabidopsis_hallerig25915.t184.353768.254avena_sativa_sangAVESA.00010b.r2.5DG0990540.1.CDS51.098941.3462
g25915arabidopsis_hallerig25915.t184.353768.0272avena_sativa_sangAVESA.00010b.r2.5CG0919340.1.CDS50.750340.9277
g25915arabidopsis_hallerig25915.t182.312966.2132avena_sativa_sangAVESA.00010b.r2.5AG0817860.1.CDS50.416740.5556
g25915arabidopsis_hallerig25915.t182.993267.5737oryza_longistaminataKN539458.1_FGP00853.587143.631
g25915arabidopsis_hallerig25915.t182.993267.5737oryza_rufipogonORUFI12G18270.150.205840.8779
g25915arabidopsis_hallerig25915.t185.487569.6145oryza_brachyanthaOB12G23320.151.502741.9399
g25915arabidopsis_hallerig25915.t184.353768.7075oryza_punctataOPUNC12G14940.145.700237.2236
g25915arabidopsis_hallerig25915.t127.210923.1293oryza_glaberrimaORGLA12G0177800.128.639624.3437
g25915arabidopsis_hallerig25915.t184.807369.3878oryza_glaberrimaORGLA12G0144600.151.023241.7463
g25915arabidopsis_hallerig25915.t183.2267.5737secale_cerealeSECCE3Rv1G0155710.150.620741.1034
g25915arabidopsis_hallerig25915.t186.167871.8821setaria_viridisTKW1417750.331141.9868
g25915arabidopsis_hallerig25915.t185.260870.2948sorghum_bicolorKXG2273750.133341.3333
g25915arabidopsis_hallerig25915.t176.64464.6258setaria_italicaKQL0496949.199441.4847
g25915arabidopsis_hallerig25915.t183.446767.3469triticum_aestivumTraesCS3B02G088300.349.595740.027
g25915arabidopsis_hallerig25915.t183.673567.8005triticum_aestivumTraesCS3A02G074000.150.896641.2414
g25915arabidopsis_hallerig25915.t183.2267.5737triticum_aestivumTraesCS3D02G073700.150.620741.1034
g25915arabidopsis_hallerig25915.t184.353770.2948zea_maysZm00001eb287160_P00249.799241.4993
g25915arabidopsis_hallerig25915.t181.179166.8934ananas_comosusAco015020.1.mrna148.053739.5973
g25915arabidopsis_hallerig25915.t170.975158.7302asparagus_officinalisONK5546846.029438.0882
g25915arabidopsis_hallerig25915.t183.446767.3469triticum_turgidumTRITD3Bv1G023990.148.548839.1821
g25915arabidopsis_hallerig25915.t181.632765.7596triticum_turgidumTRITD3Av1G020600.249.655240
g25915arabidopsis_hallerig25915.t160.090734.9206caenorhabditis_elegansF28C6.6.136.054420.9524
g25915arabidopsis_hallerig25915.t158.956934.0136drosophila_melanogasterFBpp029750233.986919.6078
g25915arabidopsis_hallerig25915.t186.848173.9229amborella_trichopodaERM9905948.48141.2658
g25915arabidopsis_hallerig25915.t187.074873.4694corylus_avellanaCav06g04720.t120.083716.9456
g25915arabidopsis_hallerig25915.t188.662176.644gossypium_raimondiiKJB8413250.977844.0678
g25915arabidopsis_hallerig25915.t184.353768.254brachypodium_distachyonKQJ8620553.602343.3718
g25915arabidopsis_hallerig25915.t160.090736.7347homo_sapiensENSP0000031579136.959622.5941
g25915arabidopsis_hallerig25915.t181.632769.3878fraxinus_excelsiorFRAEX38873_v2_000247140.1.cds54.380746.2236
g25915arabidopsis_hallerig25915.t182.993267.5737oryza_glumipatulaOGLUM12G18000.150.205840.8779
g25915arabidopsis_hallerig25915.t178.004563.9456eragrostis_curvulaTVU3451847.977739.3305
g25915arabidopsis_hallerig25915.t178.004563.9456eragrostis_curvulaTVU3452747.977739.3305
g25915arabidopsis_hallerig25915.t184.580569.161oryza_indicaBGIOSGA037640-PA42.434634.6985
g25915arabidopsis_hallerig25915.t188.208674.8299vitis_viniferaVitvi11g00954_P00250.064442.471
g25915arabidopsis_hallerig25915.t188.662175.2834nicotiana_attenuataOIT2103052.909344.9256
g25915arabidopsis_hallerig25915.t187.981974.3764coffea_canephoraCDO9713652.717444.5652
g25915arabidopsis_hallerig25915.t187.074874.3764ipomoea_trilobaitb08g08490.t153.11245.3665
g25915arabidopsis_hallerig25915.t187.755174.8299ipomoea_trilobaitb09g01820.t251.644
g25915arabidopsis_hallerig25915.t183.673567.8005triticum_urartuTuG1812G0300000852.01.T0350.341140.7913
g25915arabidopsis_hallerig25915.t182.993267.5737oryza_meridionalisOMERI08G15880.141.031433.4081
g25915arabidopsis_hallerig25915.t170.294859.8639prunus_aviumPav_sc0001030.1_g050.1.mk:mrna64.449154.8857
g25915arabidopsis_hallerig25915.t184.807369.3878oryza_sativaOs12t0571900-0151.162841.8605
g25915arabidopsis_hallerig25915.t189.342477.551pistacia_veracds-EVM0023511.151.503344.7059
g25915arabidopsis_hallerig25915.t190.476277.7778quercus_subercds-POF20388.182.608771.0145
g25915arabidopsis_hallerig25915.t13.854882.49433quercus_subercds-POF24890.15.014753.24484
g25915arabidopsis_hallerig25915.t158.503439.0023galdieria_sulphurariaEME2759436.185124.1234
g25915arabidopsis_hallerig25915.t159.863935.1474ciona_savignyiENSCSAVP0000000815335.220.6667
g25915arabidopsis_hallerig25915.t175.056763.2653chenopodium_quinoaAUR62037093-RA:cds48.250740.6706
g25915arabidopsis_hallerig25915.t159.863950.5669dioscorea_rotundataDRNTG_00252.179.279366.967
g25915arabidopsis_hallerig25915.t18.163277.70975dioscorea_rotundataDRNTG_03968.110.40469.82659
g25915arabidopsis_hallerig25915.t189.795978.6848citrus_clementinaESR4293551.428645.0649
g25915arabidopsis_hallerig25915.t189.115677.551juglans_regiacds.Jr15_00760_p150.775244.186
g25915arabidopsis_hallerig25915.t189.115677.551juglans_regiacds.Jr15_00750_p150.709744.129
g25915arabidopsis_hallerig25915.t189.115677.551juglans_regiacds.Jr15_00770_p150.840944.2432
g25915arabidopsis_hallerig25915.t153.061232.1995ostreococcus_lucimarinusABO9763241.563125.222
g25915arabidopsis_hallerig25915.t145.578224.4898saccharomyces_cerevisiaeYMR061W29.689815.9527
g25915arabidopsis_hallerig25915.t164.852655.3288actinidia_chinensisPSS2941545.396838.7302
g25915arabidopsis_hallerig25915.t185.487569.8413leersia_perrieriLPERR12G13680.251.292541.9048
g25915arabidopsis_hallerig25915.t183.2267.5737aegilops_tauschiiAET3Gv20163700.344.163735.8604
g25915arabidopsis_hallerig25915.t185.487573.9229musa_acuminataMa09_p16850.149.933843.1788
g25915arabidopsis_hallerig25915.t176.870857.8231selaginella_moellendorffiiEFJ3431642.911432.2785
g25915arabidopsis_hallerig25915.t176.870857.8231selaginella_moellendorffiiEFJ3102342.911432.2785
g25915arabidopsis_hallerig25915.t185.714371.6553panicum_halliiPUZ5868249.933941.7437
g25915arabidopsis_hallerig25915.t195.238190.7029arabis_alpinaKFK4396057.37754.6448
g25915arabidopsis_hallerig25915.t190.476278.2313quercus_lobataQL02p036870:mrna74.719164.6067
g25915arabidopsis_hallerig25915.t190.476278.2313quercus_lobataQL02p036407:mrna71.762662.0504
g25915arabidopsis_hallerig25915.t195.011391.3832eutrema_salsugineumESQ3502157.084554.9046
g25915arabidopsis_hallerig25915.t186.394672.7891kalanchoe_fedtschenkoiKaladp0098s0097.1.v1.151.836743.6735
g25915arabidopsis_hallerig25915.t186.167872.5624kalanchoe_fedtschenkoiKaladp0027s0056.1.v1.151.14443.0686
g25915arabidopsis_hallerig25915.t183.673567.5737hordeum_vulgareHORVU.MOREX.r3.3HG0230700.150.896641.1034
g25915arabidopsis_hallerig25915.t175.963759.6372rosa_chinensisPRQ5158448.270937.8963
g25915arabidopsis_hallerig25915.t187.301676.4172rosa_chinensisPRQ1951850.130243.8802
g25915arabidopsis_hallerig25915.t182.993267.5737oryza_barthiiOBART12G16440.150.205840.8779
g25915arabidopsis_hallerig25915.t174.829959.1837chara_brauniiGBG6126930.275223.945
g25915arabidopsis_hallerig25915.t187.301672.5624corymbia_citriodoracds-KAF8006682.150.06541.6125
g25915arabidopsis_hallerig25915.t184.353780.9524brassica_rapa_ro18A08p039340.1_BraROA.154.545552.346
g25915arabidopsis_hallerig25915.t187.755175.9637olea_europaeaOE9A087099C150.921144.0789
g25915arabidopsis_hallerig25915.t187.074873.2426eucalyptus_grandisKCW5012449.740941.8394
g25915arabidopsis_hallerig25915.t146.031729.0249cyanidioschyzon_merolaeCMS420CT18.060511.3879
g25915arabidopsis_hallerig25915.t195.918492.9705camelina_sativaCsa03g021580.155.366553.6649
g25915arabidopsis_hallerig25915.t187.528385.2608camelina_sativaCsa14g022100.154.907553.4851
g25915arabidopsis_hallerig25915.t195.918494.1043camelina_sativaCsa17g023530.155.952454.8942
g25915arabidopsis_hallerig25915.t172.789160.771daucus_carotaKZM9056946.521738.8406
g25915arabidopsis_hallerig25915.t172.789160.5442digitaria_exilisDexi5A01G0001840.1:cds46.929839.0351
g25915arabidopsis_hallerig25915.t172.789160.5442digitaria_exilisDexi5B01G0001880.1:cds46.998539.0922
g25915arabidopsis_hallerig25915.t170.748356.0091eragrostis_tefEt_3B_028744.CDS44.892135.5396
g25915arabidopsis_hallerig25915.t180.725666.2132eragrostis_tefEt_3A_024350.CDS48.83440.0549
g25915arabidopsis_hallerig25915.t183.2267.3469triticum_dicoccoidesTRIDC3BG011760.750.342940.7407
g25915arabidopsis_hallerig25915.t180.952465.3061triticum_dicoccoidesTRIDC3AG008760.649.44639.8892
g25915arabidopsis_hallerig25915.t199.546599.3197arabidopsis_lyratafgenesh2_kg.1__1942__AT1G17760.159.809359.673
g25915arabidopsis_hallerig25915.t131.065825.6236saccharum_spontaneumSspon.03G0044480-1C-mRNA-1:cds87.261171.9745
g25915arabidopsis_hallerig25915.t186.394671.8821nymphaea_colorataNC1G0128270.1:cds40.923734.0494
g25915arabidopsis_hallerig25915.t185.94171.4286echinochloa_crusgalliscaffold36.177.cds47.853539.7727
g25915arabidopsis_hallerig25915.t185.487571.4286echinochloa_crusgalliscaffold164.73.cds35.499129.661
g25915arabidopsis_hallerig25915.t185.03471.2018echinochloa_crusgalliscaffold4.260.cds37.055331.0277
g25915arabidopsis_hallerig25915.t196.145192.2903brassica_oleraceaBo8g067440.157.608755.2989
g25915arabidopsis_hallerig25915.t188.662178.4581corchorus_capsularisOMP0203351.856845.8886
g25915arabidopsis_hallerig25915.t184.353768.9342oryza_nivaraONIVA02G22160.141.986534.3115
g25915arabidopsis_hallerig25915.t122.222219.9546trifolium_pratenseTp57577_TGAC_v2_mRNA3411263.225856.7742
g25915arabidopsis_hallerig25915.t186.621372.7891cynara_cardunculusKVI0196953.878745.275

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression