Description

Ensembl ID g25464 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase family protein
Status Confidence Length 3851 bases Strand Minus strand
Position FJVB01000156.1 : 376463 - 380313 RNA binding domain RNA_pol_A_bac , RRM_1 , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g25464 RNA_pol_A_bac PF01000 3.1e-27 1
g25464 RNA_pol_A_bac PF01000 7e-27 2
g25464 RRM_1 PF00076 3e-17 3
g25464 RRM_1 PF00076 3e-17 4
g25464 RNA_pol_L PF01193 1.3e-23 5
g25464 RNA_pol_L PF01193 1.3e-23 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g25464.t2 2155 628aa g25464.t2
- g25464.t1 2152 627aa g25464.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25464arabidopsis_hallerig25438.t181.298771.9481arabidopsis_hallerig25464.t249.840844.1083
g25464arabidopsis_hallerig14248.t147.335428.2132arabidopsis_hallerig25464.t224.044614.3312
g25464arabidopsis_hallerig14247.t140.957426.5957arabidopsis_hallerig25464.t212.26117.96178
g25464arabidopsis_hallerig14245.t148.339529.1513arabidopsis_hallerig25464.t220.859912.5796
g25464arabidopsis_hallerig17744.t142.857118.3673arabidopsis_hallerig25464.t26.68792.86624

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25464arabidopsis_hallerig25464.t232.802523.0892chlamydomonas_reinhardtiiPNW8033953.367937.5648
g25464arabidopsis_hallerig25464.t245.541437.4204papaver_somniferumRZC5877275.862162.3342
g25464arabidopsis_hallerig25464.t248.407638.6943cannabis_sativa_femalecds.evm.model.08.7253.427142.7065
g25464arabidopsis_hallerig25464.t240.764331.6879physcomitrium_patensPp3c5_15220V3.171.111155.2778
g25464arabidopsis_hallerig25464.t246.974539.0127ficus_caricaFCD_00007260-RA:cds63.577652.8017
g25464arabidopsis_hallerig25464.t241.560533.9172beta_vulgarisKMT1262773.109259.6639
g25464arabidopsis_hallerig25464.t246.496838.8535citrullus_lanatusCla97C10G188800.174.871862.5641
g25464arabidopsis_hallerig25464.t246.178337.8981cucumis_sativusKGN5602774.168860.8696
g25464arabidopsis_hallerig25464.t248.566941.0828theobroma_cacaoEOY1196979.634567.3629
g25464arabidopsis_hallerig25464.t257.006455.0955arabidopsis_thalianaAT1G60850.495.466792.2667
g25464arabidopsis_hallerig25464.t246.019137.7389cucumis_meloMELO3C014111.2.173.91360.6138
g25464arabidopsis_hallerig25464.t245.063737.7389populus_trichocarpaPotri.001G369500.1.v4.172.378560.6138
g25464arabidopsis_hallerig25464.t254.777149.8408brassica_junceacds.BjuB04g36760S91.005382.8042
g25464arabidopsis_hallerig25464.t254.140149.2038brassica_napusCDY4050189.473781.3158
g25464arabidopsis_hallerig25464.t254.617849.8408brassica_napusCDY5476589.790681.9372
g25464arabidopsis_hallerig25464.t246.656137.1019malus_domestica_goldenmRNA:MD03G002490074.365559.1371
g25464arabidopsis_hallerig25464.t239.808933.2803malus_domestica_goldenmRNA:MD11G002750070.621559.0395
g25464arabidopsis_hallerig25464.t234.076427.707malus_domestica_goldenmRNA:MD11G002780077.536263.0435
g25464arabidopsis_hallerig25464.t242.834435.0318marchantia_polymorphaPTQ3316073.497360.1093
g25464arabidopsis_hallerig25464.t246.815337.2611prunus_dulcisVVA1877674.430459.2405
g25464arabidopsis_hallerig25464.t246.656137.4204prunus_persicaONH9935074.177259.4937
g25464arabidopsis_hallerig25464.t245.700637.2611cajanus_cajanC.cajan_27962.t75.925961.9048
g25464arabidopsis_hallerig25464.t28.91727.48408glycine_maxKRG992128067.1429
g25464arabidopsis_hallerig25464.t245.222938.0573glycine_maxKRH4641272.264660.8143
g25464arabidopsis_hallerig25464.t245.382238.3758glycine_maxKRG9845873.453662.1134
g25464arabidopsis_hallerig25464.t243.94936.6242lupinus_angustifoliusOIW1187673.015960.8466
g25464arabidopsis_hallerig25464.t245.382236.7834medicago_truncatulaAES7064471.428657.8947
g25464arabidopsis_hallerig25464.t245.222936.465phaseolus_vulgarisESW1859073.575159.3264
g25464arabidopsis_hallerig25464.t244.58636.7834pisum_sativumPsat5g165720.1.cds62.639851.6779
g25464arabidopsis_hallerig25464.t244.904536.3057vigna_radiataVradi10g02590.173.05759.0674
g25464arabidopsis_hallerig25464.t244.904535.5096vigna_unguiculataVigun06g060300.1.v1.273.05757.772
g25464arabidopsis_hallerig25464.t243.152934.8726vigna_unguiculataVigun06g065300.1.v1.271.315857.6316
g25464arabidopsis_hallerig25464.t245.063735.9873vigna_angularisKOM5236273.316158.5492
g25464arabidopsis_hallerig25464.t247.29340.1274manihot_esculentaOAY2832878.989467.0213
g25464arabidopsis_hallerig25464.t232.165627.8662manihot_esculentaOAY2847282.113871.1382
g25464arabidopsis_hallerig25464.t245.859937.8981capsicum_annuumPHT9543274.03661.1825
g25464arabidopsis_hallerig25464.t229.299423.8854capsicum_annuumPHT8684172.727359.2885
g25464arabidopsis_hallerig25464.t247.29338.3758solanum_tuberosumPGSC0003DMT40007660975.572561.3232
g25464arabidopsis_hallerig25464.t247.29338.0573solanum_lycopersicumSolyc12g015780.2.175.572560.8143
g25464arabidopsis_hallerig25464.t247.452239.6497sesamum_indicumSIN_1014322.t77.002664.3411
g25464arabidopsis_hallerig25464.t246.337637.8981helianthus_annuusmRNA:HanXRQr2_Chr01g001302178.861864.4986
g25464arabidopsis_hallerig25464.t246.019137.4204helianthus_annuusmRNA:HanXRQr2_Chr11g048171177.897663.3423
g25464arabidopsis_hallerig25464.t246.019137.2611lactuca_sativacds-PLY88721.172.79658.9421
g25464arabidopsis_hallerig25464.t239.17231.8471lolium_perennecds.KYUSt_scaffold_1259.39374.545560.6061
g25464arabidopsis_hallerig25464.t242.356734.7134avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0002549.170.184757.5198
g25464arabidopsis_hallerig25464.t242.038234.2357avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000825.370.026557.0292
g25464arabidopsis_hallerig25464.t225.955420.8599avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0003376.168.200854.8117
g25464arabidopsis_hallerig25464.t242.038234.2357avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0000317.169.841356.8783
g25464arabidopsis_hallerig25464.t223.566918.1529avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0000604.170.142254.0284
g25464arabidopsis_hallerig25464.t242.038234.2357avena_sativa_sangAVESA.00010b.r2.6DG1179660.1.CDS69.841356.8783
g25464arabidopsis_hallerig25464.t242.356734.7134avena_sativa_sangAVESA.00010b.r2.6CG1096250.1.CDS70.184757.5198
g25464arabidopsis_hallerig25464.t227.866221.4968avena_sativa_sangAVESA.00010b.r2.6CG1079970.3.CDS64.575649.8155
g25464arabidopsis_hallerig25464.t223.566918.1529avena_sativa_sangAVESA.00010b.r2.6AG1019810.1.CDS70.142254.0284
g25464arabidopsis_hallerig25464.t230.891725.9554oryza_longistaminataKN538889.1_FGP00773.764361.9772
g25464arabidopsis_hallerig25464.t233.12127.0701oryza_rufipogonORUFI02G32380.163.608651.9878
g25464arabidopsis_hallerig25464.t242.356735.0318oryza_rufipogonORUFI03G14440.170.55758.3554
g25464arabidopsis_hallerig25464.t241.719734.3949oryza_brachyanthaOB05G12580.170.053557.754
g25464arabidopsis_hallerig25464.t234.554126.9108oryza_punctataOPUNC02G28350.163.265349.2711
g25464arabidopsis_hallerig25464.t242.197535.3503oryza_punctataOPUNC03G13250.171.621660
g25464arabidopsis_hallerig25464.t241.401334.2357oryza_glaberrimaORGLA02G0262400.170.652258.4239
g25464arabidopsis_hallerig25464.t242.675235.0318oryza_glaberrimaORGLA03G0132900.170.899558.2011
g25464arabidopsis_hallerig25464.t241.24233.5987secale_cerealeSECCE1Rv1G0035090.172.957759.4366
g25464arabidopsis_hallerig25464.t243.471334.3949setaria_viridisTKW1359473.387158.0645
g25464arabidopsis_hallerig25464.t243.789835.1911setaria_viridisTKW3166873.924759.4086
g25464arabidopsis_hallerig25464.t243.312134.2357sorghum_bicolorKXG2969473.513558.1081
g25464arabidopsis_hallerig25464.t243.471334.3949setaria_italicaKQL0453873.387158.0645
g25464arabidopsis_hallerig25464.t243.789835.0318setaria_italicaKQL2336573.924759.1398
g25464arabidopsis_hallerig25464.t241.082833.9172triticum_aestivumTraesCS1D02G238500.172.676160
g25464arabidopsis_hallerig25464.t241.24234.0764triticum_aestivumTraesCS1A02G233400.172.957760.2817
g25464arabidopsis_hallerig25464.t241.082833.9172triticum_aestivumTraesCS1B02G250000.172.676160
g25464arabidopsis_hallerig25464.t242.515934.2357zea_maysZm00001eb209340_P00171.774257.7957
g25464arabidopsis_hallerig25464.t242.834434.8726ananas_comosusAco021187.1.mrna173.901160.1648
g25464arabidopsis_hallerig25464.t240.445935.0318asparagus_officinalisONK8207969.021759.7826
g25464arabidopsis_hallerig25464.t239.490432.4841triticum_turgidumTRITD1Bv1G141180.268.131956.044
g25464arabidopsis_hallerig25464.t231.369421.4968caenorhabditis_elegansH43I07.2.153.825136.8852
g25464arabidopsis_hallerig25464.t230.573220.8599drosophila_melanogasterFBpp007863357.657739.3393
g25464arabidopsis_hallerig25464.t234.713430.7325amborella_trichopodaERN1921271.710563.4868
g25464arabidopsis_hallerig25464.t241.560534.5541corylus_avellanaCav03g28020.t176.093363.2653
g25464arabidopsis_hallerig25464.t234.394927.8662gossypium_raimondiiKJB1946874.482860.3448
g25464arabidopsis_hallerig25464.t222.770718.3121gossypium_raimondiiKJB1929774.093359.5855
g25464arabidopsis_hallerig25464.t239.490433.121gossypium_raimondiiKJB1201481.848268.6469
g25464arabidopsis_hallerig25464.t219.904515.6051gossypium_raimondiiKJB2126571.839156.3218
g25464arabidopsis_hallerig25464.t231.210225.7962gossypium_raimondiiKJB3376172.862560.223
g25464arabidopsis_hallerig25464.t242.356734.8726gossypium_raimondiiKJB7490578.235364.4118
g25464arabidopsis_hallerig25464.t226.592421.3376gossypium_raimondiiKJB0683476.255761.1872
g25464arabidopsis_hallerig25464.t224.203817.6752gossypium_raimondiiKJB7022162.809945.8678
g25464arabidopsis_hallerig25464.t221.656117.5159gossypium_raimondiiKJB5334475.555661.1111
g25464arabidopsis_hallerig25464.t241.560534.3949brachypodium_distachyonKQK1437672.560
g25464arabidopsis_hallerig25464.t234.076425homo_sapiensENSP0000049604461.849745.3757
g25464arabidopsis_hallerig25464.t236.783430.7325fraxinus_excelsiorFRAEX38873_v2_000071270.1.cds75.244362.8665
g25464arabidopsis_hallerig25464.t223.089218.6306fraxinus_excelsiorFRAEX38873_v2_000223700.2.cds80.110564.6409
g25464arabidopsis_hallerig25464.t241.87934.5541oryza_glumipatulaOGLUM02G31410.166.246854.66
g25464arabidopsis_hallerig25464.t242.356735.0318oryza_glumipatulaOGLUM03G13920.155.301545.738
g25464arabidopsis_hallerig25464.t242.515933.2803eragrostis_curvulaTVU1111571.967756.3342
g25464arabidopsis_hallerig25464.t242.515933.2803eragrostis_curvulaTVT9830361.520748.1567
g25464arabidopsis_hallerig25464.t243.312133.5987eragrostis_curvulaTVU3947673.315456.8733
g25464arabidopsis_hallerig25464.t237.261130.8917oryza_indicaBGIOSGA005710-PA70.481958.4337
g25464arabidopsis_hallerig25464.t241.401333.758oryza_indicaBGIOSGA010928-PA69.333356.5333
g25464arabidopsis_hallerig25464.t246.178338.535vitis_viniferaVitvi19g00708_P00177.95765.0538
g25464arabidopsis_hallerig25464.t246.178339.172coffea_canephoraCDP1369773.417762.2785
g25464arabidopsis_hallerig25464.t246.178338.3758ipomoea_trilobaitb06g14070.t174.550161.9537
g25464arabidopsis_hallerig25464.t241.24234.2357triticum_urartuTuG1812G0100002715.01.T0172.957760.5634
g25464arabidopsis_hallerig25464.t246.815337.7389prunus_aviumPav_sc0000719.1_g510.1.mk:mrna74.619360.1523
g25464arabidopsis_hallerig25464.t242.675235.0318oryza_sativaOs03t0295400-0170.712458.0475
g25464arabidopsis_hallerig25464.t233.12127.0701oryza_sativaOs02t0723600-0069.333356.6667
g25464arabidopsis_hallerig25464.t246.496839.172pistacia_veracds-EVM0005189.177.866765.6
g25464arabidopsis_hallerig25464.t245.063738.0573quercus_subercds-POF22840.162.334852.6432
g25464arabidopsis_hallerig25464.t228.184720.8599galdieria_sulphurariaEME281825943.6667
g25464arabidopsis_hallerig25464.t241.719733.121chenopodium_quinoaAUR62017143-RA:cds73.389458.2633
g25464arabidopsis_hallerig25464.t243.630636.465dioscorea_rotundataDRNTG_24810.174.659462.3978
g25464arabidopsis_hallerig25464.t247.929940.7643citrus_clementinaESR6587071.496460.8076
g25464arabidopsis_hallerig25464.t246.656138.2166juglans_regiacds.Jr02_26110_p172.345759.2593
g25464arabidopsis_hallerig25464.t232.165622.7707ostreococcus_lucimarinusABO9725856.111139.7222
g25464arabidopsis_hallerig25464.t230.573220.7006saccharomyces_cerevisiaeYPR110C57.313438.806
g25464arabidopsis_hallerig25464.t244.904538.8535actinidia_chinensisPSR9551975.806465.5914
g25464arabidopsis_hallerig25464.t245.700639.9682actinidia_chinensisPSR9556976.73867.1123
g25464arabidopsis_hallerig25464.t242.038234.7134leersia_perrieriLPERR03G12130.171.739159.2391
g25464arabidopsis_hallerig25464.t241.082833.9172aegilops_tauschiiAET1Gv20583500.272.676160
g25464arabidopsis_hallerig25464.t243.789836.1465musa_acuminataMa01_p12460.174.728361.6848
g25464arabidopsis_hallerig25464.t243.312135.0318musa_acuminataMa07_p06190.173.513559.4595
g25464arabidopsis_hallerig25464.t240.605133.758selaginella_moellendorffiiEFJ3067972.443260.2273
g25464arabidopsis_hallerig25464.t240.605133.758selaginella_moellendorffiiEFJ2871672.23860.0567
g25464arabidopsis_hallerig25464.t243.312134.5541panicum_halliiPUZ6939073.315458.4906
g25464arabidopsis_hallerig25464.t251.751647.7707arabis_alpinaKFK4075686.436279.7872
g25464arabidopsis_hallerig25464.t246.019138.535quercus_lobataQL08p003504:mrna67.053456.1485
g25464arabidopsis_hallerig25464.t252.866248.2484eutrema_salsugineumESQ2939588.297980.5851
g25464arabidopsis_hallerig25464.t241.560533.5987kalanchoe_fedtschenkoiKaladp0024s0721.1.v1.169.414956.117
g25464arabidopsis_hallerig25464.t238.375830.0955kalanchoe_fedtschenkoiKaladp0051s0028.1.v1.166.75952.3546
g25464arabidopsis_hallerig25464.t241.082833.9172hordeum_vulgareHORVU.MOREX.r3.1HG0059360.172.676160
g25464arabidopsis_hallerig25464.t246.178338.2166rosa_chinensisPRQ3510171.253158.9681
g25464arabidopsis_hallerig25464.t242.356735.0318oryza_barthiiOBART03G13780.170.55758.3554
g25464arabidopsis_hallerig25464.t244.108334.3949chara_brauniiGBG9111872.894756.8421
g25464arabidopsis_hallerig25464.t244.745235.5096corymbia_citriodoracds-KAF7851649.175.335159.7855
g25464arabidopsis_hallerig25464.t236.146528.1847corymbia_citriodoracds-KAF7847486.172.756456.7308
g25464arabidopsis_hallerig25464.t241.082832.3248corymbia_citriodoracds-KAF8038181.171.468156.2327
g25464arabidopsis_hallerig25464.t254.777150brassica_rapa_ro18A09p019810.1_BraROA.190.052482.199
g25464arabidopsis_hallerig25464.t246.815338.2166olea_europaeaOE9A076900C175.96962.0155
g25464arabidopsis_hallerig25464.t246.974539.3312olea_europaeaOE9A068949C278.249365.5172
g25464arabidopsis_hallerig25464.t244.426836.3057eucalyptus_grandisKCW713727561.2903
g25464arabidopsis_hallerig25464.t254.617851.2739camelina_sativaCsa07g061990.193.206587.5
g25464arabidopsis_hallerig25464.t254.299450.7962camelina_sativaCsa16g052680.193.424787.3973
g25464arabidopsis_hallerig25464.t254.299450.9554camelina_sativaCsa09g095320.181.774676.7386
g25464arabidopsis_hallerig25464.t233.75827.8662daucus_carotaKZM9939178.810465.0558
g25464arabidopsis_hallerig25464.t239.649730.8917digitaria_exilisDexi8B01G0012850.1:cds72.173956.2319
g25464arabidopsis_hallerig25464.t226.910821.9745digitaria_exilisDexi8A01G0014100.1:cds76.126162.1622
g25464arabidopsis_hallerig25464.t235.509627.0701digitaria_exilisDexi2B01G0010020.1:cds48.268436.7965
g25464arabidopsis_hallerig25464.t235.509627.0701digitaria_exilisDexi2A01G0010680.1:cds54.257941.3625
g25464arabidopsis_hallerig25464.t242.356733.2803eragrostis_tefEt_2A_015364.CDS71.698156.3342
g25464arabidopsis_hallerig25464.t239.331230.8917eragrostis_tefEt_5B_043624.CDS73.293857.5668
g25464arabidopsis_hallerig25464.t242.356732.9618eragrostis_tefEt_2B_019560.CDS71.698155.7951
g25464arabidopsis_hallerig25464.t243.152934.0764eragrostis_tefEt_5A_040948.CDS73.045857.6819
g25464arabidopsis_hallerig25464.t241.082833.9172triticum_dicoccoidesTRIDC1BG041180.370.879158.5165
g25464arabidopsis_hallerig25464.t241.082833.9172triticum_dicoccoidesTRIDC1AG035130.170.879158.5165
g25464arabidopsis_hallerig25464.t259.554158.9172arabidopsis_lyratafgenesh2_kg.2__376__AT1G60850.199.468198.4043
g25464arabidopsis_hallerig25464.t243.94935.0318saccharum_spontaneumSspon.04G0029780-3D-mRNA-1:cds71.502656.9948
g25464arabidopsis_hallerig25464.t242.515933.9172saccharum_spontaneumSspon.04G0016010-2C-mRNA-1:cds55.394244.1909
g25464arabidopsis_hallerig25464.t240.764332.6433saccharum_spontaneumSspon.04G0016010-1A-mRNA-1:cds70.718256.6298
g25464arabidopsis_hallerig25464.t244.267535.3503saccharum_spontaneumSspon.04G0029780-1P-mRNA-1:cds72.020757.513
g25464arabidopsis_hallerig25464.t217.675215.1274saccharum_spontaneumSspon.04G0029780-2C-mRNA-1:cds74.496663.7584
g25464arabidopsis_hallerig25464.t240.127431.6879nymphaea_colorataNC3G0202410.1:cds64.615451.0256
g25464arabidopsis_hallerig25464.t243.471334.5541echinochloa_crusgalliscaffold12.615.cds73.584958.4906
g25464arabidopsis_hallerig25464.t243.471334.8726echinochloa_crusgalliscaffold167.115.cds73.584959.0296
g25464arabidopsis_hallerig25464.t243.471334.8726echinochloa_crusgalliscaffold34.685.cds73.584959.0296
g25464arabidopsis_hallerig25464.t214.331210.0318echinochloa_crusgalliscaffold65.626.cds34.351124.0458
g25464arabidopsis_hallerig25464.t253.980949.2038brassica_oleraceaBo9g043670.188.743580.8901
g25464arabidopsis_hallerig25464.t247.29340.2866corchorus_capsularisOMO8377477.952866.4042
g25464arabidopsis_hallerig25464.t242.356735.0318oryza_nivaraONIVA03G15040.170.55758.3554
g25464arabidopsis_hallerig25464.t237.261130.8917oryza_nivaraONIVA02G33810.165.181154.039
g25464arabidopsis_hallerig25464.t228.025522.1338trifolium_pratenseTp57577_TGAC_v2_mRNA1856663.309450
g25464arabidopsis_hallerig25464.t217.197514.4904trifolium_pratenseTp57577_TGAC_v2_mRNA969666.666756.1728
g25464arabidopsis_hallerig25464.t245.700637.1019cynara_cardunculusKVI1042277.777863.1436

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression