Description

Ensembl ID g25438 Gene ID Accession -
Symbol Alias - Full Name RNA polymerase I subunit 43
Status Confidence Length 2602 bases Strand Plus strand
Position FJVB01000156.1 : 258537 - 261138 RNA binding domain RNA_pol_A_bac , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g25438 RNA_pol_A_bac PF01000 2e-26 1
g25438 RNA_pol_L PF01193 2.4e-21 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g25438.t1 1533 385aa g25438.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25438arabidopsis_hallerig25464.t249.840844.1083arabidopsis_hallerig25438.t181.298771.9481
g25438arabidopsis_hallerig14248.t146.39526.3323arabidopsis_hallerig25438.t138.441621.8182
g25438arabidopsis_hallerig14247.t139.893623.4043arabidopsis_hallerig25438.t119.480511.4286
g25438arabidopsis_hallerig14245.t147.232526.1993arabidopsis_hallerig25438.t133.246818.4416
g25438arabidopsis_hallerig17744.t144.89820.4082arabidopsis_hallerig25438.t111.42865.19481

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g25438arabidopsis_hallerig25438.t155.324740.7792chlamydomonas_reinhardtiiPNW8033955.181340.6736
g25438arabidopsis_hallerig25438.t176.623463.1169papaver_somniferumRZC5877278.249364.4562
g25438arabidopsis_hallerig25438.t174.805261.2987cannabis_sativa_femalecds.evm.model.08.7250.615141.4763
g25438arabidopsis_hallerig25438.t169.350654.5455physcomitrium_patensPp3c5_15220V3.174.166758.3333
g25438arabidopsis_hallerig25438.t175.584462.8571ficus_caricaFCD_00007260-RA:cds62.715552.1552
g25438arabidopsis_hallerig25438.t171.168859.7403beta_vulgarisKMT1262776.750764.4258
g25438arabidopsis_hallerig25438.t176.883165.7143citrullus_lanatusCla97C10G188800.175.897464.8718
g25438arabidopsis_hallerig25438.t176.623463.6364cucumis_sativusKGN5602775.447662.6598
g25438arabidopsis_hallerig25438.t181.818270.9091theobroma_cacaoEOY1196982.245471.2794
g25438arabidopsis_hallerig25438.t195.844291.4286arabidopsis_thalianaAT1G60620.195.844291.4286
g25438arabidopsis_hallerig25438.t176.623463.8961cucumis_meloMELO3C014111.2.175.447662.9156
g25438arabidopsis_hallerig25438.t176.103962.8571populus_trichocarpaPotri.001G369500.1.v4.174.936161.8926
g25438arabidopsis_hallerig25438.t186.753376.8831brassica_junceacds.BjuA01g15230S83.709374.1855
g25438arabidopsis_hallerig25438.t167.532558.1818brassica_junceacds.BjuB07g38780S79.754668.7117
g25438arabidopsis_hallerig25438.t185.97477.6623brassica_junceacds.BjuB02g49490S81.527173.6453
g25438arabidopsis_hallerig25438.t158.181851.9481brassica_junceacds.BjuA03g02240S78.321769.9301
g25438arabidopsis_hallerig25438.t187.01376.8831brassica_napusCDY2454483.959974.1855
g25438arabidopsis_hallerig25438.t186.753376.8831brassica_napusCDY3412983.709374.1855
g25438arabidopsis_hallerig25438.t177.142964.1558malus_domestica_goldenmRNA:MD03G002490075.380762.6904
g25438arabidopsis_hallerig25438.t167.532555.8442malus_domestica_goldenmRNA:MD11G002750073.446360.7345
g25438arabidopsis_hallerig25438.t156.623447.7922malus_domestica_goldenmRNA:MD11G002780078.985566.6667
g25438arabidopsis_hallerig25438.t171.688359.4805marchantia_polymorphaPTQ3316075.409862.5683
g25438arabidopsis_hallerig25438.t176.883162.3377prunus_dulcisVVA1877674.936760.7595
g25438arabidopsis_hallerig25438.t176.883162.5974prunus_persicaONH9935074.936761.0127
g25438arabidopsis_hallerig25438.t178.701363.6364cajanus_cajanC.cajan_27962.t80.158764.8148
g25438arabidopsis_hallerig25438.t114.805212.7273glycine_maxKRG9921281.428670
g25438arabidopsis_hallerig25438.t178.181865.1948glycine_maxKRH4641276.590363.8677
g25438arabidopsis_hallerig25438.t178.441665.1948glycine_maxKRG9845877.835164.6907
g25438arabidopsis_hallerig25438.t175.064962.5974lupinus_angustifoliusOIW1187676.45563.7566
g25438arabidopsis_hallerig25438.t176.883162.3377medicago_truncatulaAES7064474.185560.1504
g25438arabidopsis_hallerig25438.t176.363661.5584phaseolus_vulgarisESW1859076.165861.399
g25438arabidopsis_hallerig25438.t176.623463.1169pisum_sativumPsat5g165720.1.cds65.995554.3624
g25438arabidopsis_hallerig25438.t175.324760.5195vigna_radiataVradi10g02590.175.129560.3627
g25438arabidopsis_hallerig25438.t176.103960.2597vigna_unguiculataVigun06g060300.1.v1.275.906760.1036
g25438arabidopsis_hallerig25438.t172.98759.2208vigna_unguiculataVigun06g065300.1.v1.273.947460
g25438arabidopsis_hallerig25438.t175.844260.5195vigna_angularisKOM5236275.647760.3627
g25438arabidopsis_hallerig25438.t180.519568.5714manihot_esculentaOAY2832882.446870.2128
g25438arabidopsis_hallerig25438.t154.02646.4935manihot_esculentaOAY2847284.552872.7642
g25438arabidopsis_hallerig25438.t178.701366.7533capsicum_annuumPHT9543277.89266.0668
g25438arabidopsis_hallerig25438.t148.571442.0779capsicum_annuumPHT8684173.91364.0316
g25438arabidopsis_hallerig25438.t180.519567.2727solanum_tuberosumPGSC0003DMT40007660978.880465.9033
g25438arabidopsis_hallerig25438.t180.779267.5325solanum_lycopersicumSolyc12g015780.2.179.134966.1578
g25438arabidopsis_hallerig25438.t180.259768.0519sesamum_indicumSIN_1014322.t79.84567.7003
g25438arabidopsis_hallerig25438.t176.103962.8571helianthus_annuusmRNA:HanXRQr2_Chr01g001302179.403865.5827
g25438arabidopsis_hallerig25438.t176.103961.5584helianthus_annuusmRNA:HanXRQr2_Chr11g048171178.975763.8814
g25438arabidopsis_hallerig25438.t178.181864.4156lactuca_sativacds-PLY88721.175.818662.4685
g25438arabidopsis_hallerig25438.t167.01356.1039lolium_perennecds.KYUSt_scaffold_1259.39378.181865.4545
g25438arabidopsis_hallerig25438.t172.467559.4805avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0002549.173.614860.4222
g25438arabidopsis_hallerig25438.t171.948159.4805avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000825.373.474860.7427
g25438arabidopsis_hallerig25438.t145.194835.8442avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0003376.172.803357.7406
g25438arabidopsis_hallerig25438.t171.948159.4805avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0000317.173.280460.582
g25438arabidopsis_hallerig25438.t139.480531.6883avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0000604.172.037957.8199
g25438arabidopsis_hallerig25438.t171.948159.4805avena_sativa_sangAVESA.00010b.r2.6DG1179660.1.CDS73.280460.582
g25438arabidopsis_hallerig25438.t172.467559.4805avena_sativa_sangAVESA.00010b.r2.6CG1096250.1.CDS73.614860.4222
g25438arabidopsis_hallerig25438.t148.311737.4026avena_sativa_sangAVESA.00010b.r2.6CG1079970.3.CDS68.634753.1365
g25438arabidopsis_hallerig25438.t139.480531.6883avena_sativa_sangAVESA.00010b.r2.6AG1019810.1.CDS72.037957.8199
g25438arabidopsis_hallerig25438.t152.727343.6364oryza_longistaminataKN538889.1_FGP00777.186363.8783
g25438arabidopsis_hallerig25438.t156.363646.2338oryza_rufipogonORUFI02G32380.166.360954.4342
g25438arabidopsis_hallerig25438.t171.168859.2208oryza_rufipogonORUFI03G14440.172.67960.4775
g25438arabidopsis_hallerig25438.t171.688359.2208oryza_brachyanthaOB05G12580.173.796860.9626
g25438arabidopsis_hallerig25438.t158.441646.2338oryza_punctataOPUNC02G28350.165.597751.895
g25438arabidopsis_hallerig25438.t171.168860.2597oryza_punctataOPUNC03G13250.174.054162.7027
g25438arabidopsis_hallerig25438.t170.649458.4416oryza_glaberrimaORGLA02G0262400.173.91361.1413
g25438arabidopsis_hallerig25438.t171.688359.2208oryza_glaberrimaORGLA03G0132900.173.015960.3175
g25438arabidopsis_hallerig25438.t170.909157.9221secale_cerealeSECCE1Rv1G0035090.176.901462.8169
g25438arabidopsis_hallerig25438.t173.506561.8182setaria_viridisTKW1359476.075363.9785
g25438arabidopsis_hallerig25438.t174.545562.8571setaria_viridisTKW3166877.150565.0538
g25438arabidopsis_hallerig25438.t174.02660.5195sorghum_bicolorKXG2969477.02762.973
g25438arabidopsis_hallerig25438.t173.506561.8182setaria_italicaKQL0453876.075363.9785
g25438arabidopsis_hallerig25438.t174.545562.5974setaria_italicaKQL2336577.150564.7849
g25438arabidopsis_hallerig25438.t171.168858.7013triticum_aestivumTraesCS1D02G238500.177.183163.662
g25438arabidopsis_hallerig25438.t171.428658.961triticum_aestivumTraesCS1A02G233400.177.464863.9437
g25438arabidopsis_hallerig25438.t171.168858.7013triticum_aestivumTraesCS1B02G250000.177.183163.662
g25438arabidopsis_hallerig25438.t172.727360.2597zea_maysZm00001eb209340_P00175.268862.3656
g25438arabidopsis_hallerig25438.t175.844262.3377ananas_comosusAco021187.1.mrna180.219865.9341
g25438arabidopsis_hallerig25438.t169.870159.7403asparagus_officinalisONK8207973.097862.5
g25438arabidopsis_hallerig25438.t167.532554.2857triticum_turgidumTRITD1Bv1G141180.271.428657.4176
g25438arabidopsis_hallerig25438.t148.831233.7662caenorhabditis_elegansH43I07.2.151.366135.5191
g25438arabidopsis_hallerig25438.t150.649334.8052drosophila_melanogasterFBpp007863358.558640.2402
g25438arabidopsis_hallerig25438.t158.96149.3507amborella_trichopodaERN1921274.671162.5
g25438arabidopsis_hallerig25438.t169.090956.3636corylus_avellanaCav03g28020.t177.55163.2653
g25438arabidopsis_hallerig25438.t157.922149.0909gossypium_raimondiiKJB1946876.896665.1724
g25438arabidopsis_hallerig25438.t137.662330.1299gossypium_raimondiiKJB1929775.129560.1036
g25438arabidopsis_hallerig25438.t165.714356.3636gossypium_raimondiiKJB1201483.498471.6172
g25438arabidopsis_hallerig25438.t133.506526.7532gossypium_raimondiiKJB2126574.137959.1954
g25438arabidopsis_hallerig25438.t154.285746.7532gossypium_raimondiiKJB3376177.695266.9145
g25438arabidopsis_hallerig25438.t171.168860.5195gossypium_raimondiiKJB7490580.588268.5294
g25438arabidopsis_hallerig25438.t143.896136.1039gossypium_raimondiiKJB0683477.16963.4703
g25438arabidopsis_hallerig25438.t141.298730.9091gossypium_raimondiiKJB7022165.702549.1736
g25438arabidopsis_hallerig25438.t136.623430.9091gossypium_raimondiiKJB5334478.333366.1111
g25438arabidopsis_hallerig25438.t171.168860.7792brachypodium_distachyonKQK1437676.111165
g25438arabidopsis_hallerig25438.t155.584442.0779homo_sapiensENSP0000049604461.849746.8208
g25438arabidopsis_hallerig25438.t163.116955.0649fraxinus_excelsiorFRAEX38873_v2_000071270.1.cds79.153169.0554
g25438arabidopsis_hallerig25438.t138.701332.2078fraxinus_excelsiorFRAEX38873_v2_000223700.2.cds82.320468.5083
g25438arabidopsis_hallerig25438.t171.428658.961oryza_glumipatulaOGLUM02G31410.169.269557.1788
g25438arabidopsis_hallerig25438.t171.168859.2208oryza_glumipatulaOGLUM03G13920.156.964747.4012
g25438arabidopsis_hallerig25438.t172.467559.7403eragrostis_curvulaTVU1111575.202261.9946
g25438arabidopsis_hallerig25438.t172.467560eragrostis_curvulaTVT9830364.285753.2258
g25438arabidopsis_hallerig25438.t174.02660.7792eragrostis_curvulaTVU3947676.819463.0728
g25438arabidopsis_hallerig25438.t163.376652.987oryza_indicaBGIOSGA005710-PA73.49461.4458
g25438arabidopsis_hallerig25438.t169.350657.1429oryza_indicaBGIOSGA010928-PA71.258.6667
g25438arabidopsis_hallerig25438.t177.922166.4935vitis_viniferaVitvi19g00708_P00180.645268.8172
g25438arabidopsis_hallerig25438.t180.259767.7922coffea_canephoraCDP1369778.227966.076
g25438arabidopsis_hallerig25438.t178.181865.974ipomoea_trilobaitb06g14070.t177.377965.2956
g25438arabidopsis_hallerig25438.t171.428658.7013triticum_urartuTuG1812G0100002715.01.T0177.464863.662
g25438arabidopsis_hallerig25438.t176.623462.5974prunus_aviumPav_sc0000719.1_g510.1.mk:mrna74.873161.1675
g25438arabidopsis_hallerig25438.t171.688359.2208oryza_sativaOs03t0295400-0172.823260.1583
g25438arabidopsis_hallerig25438.t156.363646.2338oryza_sativaOs02t0723600-0072.333359.3333
g25438arabidopsis_hallerig25438.t177.922165.974pistacia_veracds-EVM0005189.18067.7333
g25438arabidopsis_hallerig25438.t173.766261.8182quercus_subercds-POF22840.162.555152.4229
g25438arabidopsis_hallerig25438.t148.051935.0649galdieria_sulphurariaEME2818261.666745
g25438arabidopsis_hallerig25438.t171.428659.7403chenopodium_quinoaAUR62017143-RA:cds77.030864.4258
g25438arabidopsis_hallerig25438.t173.766263.6364dioscorea_rotundataDRNTG_24810.177.384266.7575
g25438arabidopsis_hallerig25438.t180.259767.7922citrus_clementinaESR6587073.396761.9953
g25438arabidopsis_hallerig25438.t176.883164.4156juglans_regiacds.Jr02_26110_p173.086461.2346
g25438arabidopsis_hallerig25438.t154.545541.5584ostreococcus_lucimarinusABO9725858.333344.4444
g25438arabidopsis_hallerig25438.t152.207833.7662saccharomyces_cerevisiaeYPR110C6038.806
g25438arabidopsis_hallerig25438.t176.623467.013actinidia_chinensisPSR9551979.301169.3548
g25438arabidopsis_hallerig25438.t177.922168.3117actinidia_chinensisPSR9556980.213970.3209
g25438arabidopsis_hallerig25438.t171.168858.961leersia_perrieriLPERR03G12130.174.456561.6848
g25438arabidopsis_hallerig25438.t171.168858.7013aegilops_tauschiiAET1Gv20583500.277.183163.662
g25438arabidopsis_hallerig25438.t174.545563.3766musa_acuminataMa01_p12460.177.989166.3043
g25438arabidopsis_hallerig25438.t174.545561.2987musa_acuminataMa07_p06190.177.567663.7838
g25438arabidopsis_hallerig25438.t169.090956.3636selaginella_moellendorffiiEFJ3067975.568261.6477
g25438arabidopsis_hallerig25438.t168.831256.1039selaginella_moellendorffiiEFJ2871675.070861.1898
g25438arabidopsis_hallerig25438.t174.285762.0779panicum_halliiPUZ6939077.08964.4205
g25438arabidopsis_hallerig25438.t175.844264.1558quercus_lobataQL08p003504:mrna67.749457.3086
g25438arabidopsis_hallerig25438.t185.97478.7013eutrema_salsugineumESQ5571684.010276.9036
g25438arabidopsis_hallerig25438.t170.389658.4416kalanchoe_fedtschenkoiKaladp0024s0721.1.v1.172.074559.8404
g25438arabidopsis_hallerig25438.t162.857148.5714kalanchoe_fedtschenkoiKaladp0051s0028.1.v1.167.03651.8006
g25438arabidopsis_hallerig25438.t171.168858.961hordeum_vulgareHORVU.MOREX.r3.1HG0059360.177.183163.9437
g25438arabidopsis_hallerig25438.t176.103963.6364rosa_chinensisPRQ3510171.990260.1966
g25438arabidopsis_hallerig25438.t171.168859.2208oryza_barthiiOBART03G13780.172.67960.4775
g25438arabidopsis_hallerig25438.t174.285758.961chara_brauniiGBG9111875.263259.7368
g25438arabidopsis_hallerig25438.t177.402664.9351corymbia_citriodoracds-KAF7851649.179.892867.0241
g25438arabidopsis_hallerig25438.t163.116952.7273corymbia_citriodoracds-KAF7847486.177.884665.0641
g25438arabidopsis_hallerig25438.t170.909159.7403corymbia_citriodoracds-KAF8038181.175.623363.7119
g25438arabidopsis_hallerig25438.t186.753376.6234brassica_rapa_ro18A01p039560.1_BraROA.183.709373.9348
g25438arabidopsis_hallerig25438.t18067.7922olea_europaeaOE9A076900C179.586667.4419
g25438arabidopsis_hallerig25438.t180.259767.7922olea_europaeaOE9A068949C281.962969.2308
g25438arabidopsis_hallerig25438.t175.844265.4545eucalyptus_grandisKCW7137278.494667.7419
g25438arabidopsis_hallerig25438.t191.688386.7533camelina_sativaCsa10g040420.175.751171.6738
g25438arabidopsis_hallerig25438.t192.207887.013camelina_sativaCsa12g074260.183.726479.0094
g25438arabidopsis_hallerig25438.t192.207887.7922camelina_sativaCsa11g046520.169.200865.8869
g25438arabidopsis_hallerig25438.t155.844245.974daucus_carotaKZM9939179.925765.7993
g25438arabidopsis_hallerig25438.t167.272756.1039digitaria_exilisDexi8B01G0012850.1:cds75.072562.6087
g25438arabidopsis_hallerig25438.t145.194838.1818digitaria_exilisDexi8A01G0014100.1:cds78.378466.2162
g25438arabidopsis_hallerig25438.t160.519549.8701digitaria_exilisDexi2B01G0010020.1:cds50.432941.5584
g25438arabidopsis_hallerig25438.t160.259749.6104digitaria_exilisDexi2A01G0010680.1:cds56.447746.472
g25438arabidopsis_hallerig25438.t172.727359.4805eragrostis_tefEt_2A_015364.CDS75.471761.7251
g25438arabidopsis_hallerig25438.t167.01355.0649eragrostis_tefEt_5B_043624.CDS76.557962.908
g25438arabidopsis_hallerig25438.t172.727359.2208eragrostis_tefEt_2B_019560.CDS75.471761.4555
g25438arabidopsis_hallerig25438.t174.285762.0779eragrostis_tefEt_5A_040948.CDS77.08964.4205
g25438arabidopsis_hallerig25438.t171.168858.7013triticum_dicoccoidesTRIDC1BG041180.375.274762.0879
g25438arabidopsis_hallerig25438.t171.168858.7013triticum_dicoccoidesTRIDC1AG035130.175.274762.0879
g25438arabidopsis_hallerig25438.t198.181897.4026arabidopsis_lyratafgenesh2_kg.2__398__AT1G60620.198.181897.4026
g25438arabidopsis_hallerig25438.t174.285761.5584saccharum_spontaneumSspon.04G0029780-3D-mRNA-1:cds74.093361.399
g25438arabidopsis_hallerig25438.t172.98760saccharum_spontaneumSspon.04G0016010-2C-mRNA-1:cds58.298847.9253
g25438arabidopsis_hallerig25438.t169.870156.3636saccharum_spontaneumSspon.04G0016010-1A-mRNA-1:cds74.309459.9448
g25438arabidopsis_hallerig25438.t174.285761.5584saccharum_spontaneumSspon.04G0029780-1P-mRNA-1:cds74.093361.399
g25438arabidopsis_hallerig25438.t129.610426.2338saccharum_spontaneumSspon.04G0029780-2C-mRNA-1:cds76.510167.7852
g25438arabidopsis_hallerig25438.t167.532554.8052nymphaea_colorataNC3G0202410.1:cds66.666754.1026
g25438arabidopsis_hallerig25438.t174.02661.5584echinochloa_crusgalliscaffold12.615.cds76.819463.8814
g25438arabidopsis_hallerig25438.t174.02662.0779echinochloa_crusgalliscaffold167.115.cds76.819464.4205
g25438arabidopsis_hallerig25438.t174.02662.0779echinochloa_crusgalliscaffold34.685.cds76.819464.4205
g25438arabidopsis_hallerig25438.t124.415618.1818echinochloa_crusgalliscaffold65.626.cds35.877926.7176
g25438arabidopsis_hallerig25438.t186.753376.8831brassica_oleraceaBo1g093120.183.709374.1855
g25438arabidopsis_hallerig25438.t18068.3117corchorus_capsularisOMO8377480.839969.0289
g25438arabidopsis_hallerig25438.t171.168859.2208oryza_nivaraONIVA03G15040.172.67960.4775
g25438arabidopsis_hallerig25438.t163.376652.987oryza_nivaraONIVA02G33810.167.966656.8245
g25438arabidopsis_hallerig25438.t148.571437.9221trifolium_pratenseTp57577_TGAC_v2_mRNA1856667.266252.518
g25438arabidopsis_hallerig25438.t130.129926.4935trifolium_pratenseTp57577_TGAC_v2_mRNA969671.604962.963
g25438arabidopsis_hallerig25438.t177.142963.6364cynara_cardunculusKVI1042280.487866.3957

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression