Description

Ensembl ID g24792 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 3816 bases Strand Minus strand
Position FJVB01000145.1 : 318221 - 322036 RNA binding domain CwfJ_C_1 , CwfJ_C_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g24792 CwfJ_C_1 PF04677 1.3e-45 1
g24792 CwfJ_C_2 PF04676 4.4e-28 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g24792.t1 2496 691aa g24792.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g24792arabidopsis_hallerig24110.t134.563817.953arabidopsis_hallerig24792.t129.811915.4848

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g24792arabidopsis_hallerig24792.t148.480529.8119chlamydomonas_reinhardtiiPNW7098530.482318.7443
g24792arabidopsis_hallerig24792.t167.727951.0854papaver_somniferumRZC5391662.987947.5101
g24792arabidopsis_hallerig24792.t167.438551.3748papaver_somniferumRZC6192362.97347.973
g24792arabidopsis_hallerig24792.t167.583250.0724cannabis_sativa_femalecds.evm.model.08.141161.528345.5863
g24792arabidopsis_hallerig24792.t154.413939.508physcomitrium_patensPp3c6_28790V3.546.708133.913
g24792arabidopsis_hallerig24792.t121.128817.2214ficus_caricaFCD_00029178-RA:cds78.918964.3243
g24792arabidopsis_hallerig24792.t168.74152.822ficus_caricaFCD_00029712-RA:cds62.254347.8375
g24792arabidopsis_hallerig24792.t169.609352.9667beta_vulgarisKMT1846962.386547.4708
g24792arabidopsis_hallerig24792.t130.24624.0232beta_vulgarisKMT1771976.556860.8059
g24792arabidopsis_hallerig24792.t169.464553.6903citrullus_lanatusCla97C09G183440.157.623144.5378
g24792arabidopsis_hallerig24792.t162.373448.0463cucumis_sativusKGN4963272.43755.7983
g24792arabidopsis_hallerig24792.t120.839416.4978theobroma_cacaoEOY2027968.571454.2857
g24792arabidopsis_hallerig24792.t173.516659.3343theobroma_cacaoEOY0593565.379752.7671
g24792arabidopsis_hallerig24792.t196.671594.0666arabidopsis_thalianaAT1G56290.196.531893.9306
g24792arabidopsis_hallerig24792.t170.043453.4009cucumis_meloMELO3C015028.2.162.210847.4293
g24792arabidopsis_hallerig24792.t172.503657.7424populus_trichocarpaPotri.001G415900.1.v4.164.395951.2853
g24792arabidopsis_hallerig24792.t184.515277.2793brassica_junceacds.BjuA09g54250S87.034379.5827
g24792arabidopsis_hallerig24792.t183.357575.6874brassica_napusCDY4172385.714377.8274
g24792arabidopsis_hallerig24792.t184.949376.7004brassica_napusCDY5357287.742979.2227
g24792arabidopsis_hallerig24792.t171.924755.4269malus_domestica_goldenmRNA:MD16G018300061.892947.6961
g24792arabidopsis_hallerig24792.t171.924754.4139malus_domestica_goldenmRNA:MD13G018300062.047446.9413
g24792arabidopsis_hallerig24792.t156.295240.8104marchantia_polymorphaPTQ3439549.617335.9694
g24792arabidopsis_hallerig24792.t171.201256.7294prunus_dulcisVVA3414550.461540.2051
g24792arabidopsis_hallerig24792.t171.635356.5847prunus_persicaONI2656761.338348.4511
g24792arabidopsis_hallerig24792.t170.76755.7164cajanus_cajanC.cajan_07850.t62.372449.1071
g24792arabidopsis_hallerig24792.t169.175154.4139glycine_maxKRG9098460.969447.9592
g24792arabidopsis_hallerig24792.t169.898755.4269glycine_maxKRH3576961.450448.7277
g24792arabidopsis_hallerig24792.t170.332855.8611lupinus_angustifoliusOIW0697161.753549.047
g24792arabidopsis_hallerig24792.t170.043452.822medicago_truncatulaKEH4413263.10347.588
g24792arabidopsis_hallerig24792.t169.75455.4269phaseolus_vulgarisESW1502667.983154.0197
g24792arabidopsis_hallerig24792.t120.694617.0767pisum_sativumPsat6g220520.1.cds80.79166.6667
g24792arabidopsis_hallerig24792.t146.888636.6136pisum_sativumPsat0s986g0040.1.cds70.742455.2402
g24792arabidopsis_hallerig24792.t119.971116.3531pisum_sativumPsat2g188400.1.cds84.662669.3252
g24792arabidopsis_hallerig24792.t129.377721.8524pisum_sativumPsat2g188360.1.cds64.240547.7848
g24792arabidopsis_hallerig24792.t113.02468.82779pisum_sativumPsat6g146280.1.cds73.170749.5935
g24792arabidopsis_hallerig24792.t120.115816.7873pisum_sativumPsat2g188680.1.cds89.102674.359
g24792arabidopsis_hallerig24792.t122.431316.3531pisum_sativumPsat2g188720.1.cds65.67847.8814
g24792arabidopsis_hallerig24792.t169.609354.2692vigna_unguiculataVigun07g259700.1.v1.267.461452.5947
g24792arabidopsis_hallerig24792.t136.758329.9566vigna_unguiculataVigun01g128900.1.v1.281.150266.1342
g24792arabidopsis_hallerig24792.t169.319854.7033vigna_angularisKOM2890366.806152.7197
g24792arabidopsis_hallerig24792.t152.532641.6787manihot_esculentaOAY5888571.739156.917
g24792arabidopsis_hallerig24792.t172.793158.0318manihot_esculentaOAY5883264.322351.2788
g24792arabidopsis_hallerig24792.t168.306852.0984capsicum_annuumPHT8582460.824746.3918
g24792arabidopsis_hallerig24792.t167.583251.0854solanum_tuberosumPGSC0003DMT40003909660.335945.6072
g24792arabidopsis_hallerig24792.t167.293851.809solanum_lycopersicumSolyc09g083420.3.160.077546.2532
g24792arabidopsis_hallerig24792.t167.293850.7959sesamum_indicumSIN_1002553.t57.692343.5484
g24792arabidopsis_hallerig24792.t135.455928.3647helianthus_annuusmRNA:HanXRQr2_Chr06g026653181.939865.5518
g24792arabidopsis_hallerig24792.t167.583250.6512helianthus_annuusmRNA:HanXRQr2_Chr06g026647162.600546.9169
g24792arabidopsis_hallerig24792.t167.872752.5326lactuca_sativacds-PLY62294.163.207548.9218
g24792arabidopsis_hallerig24792.t162.083945.4414lolium_perennecds.KYUSt_chr4.1072054.649740
g24792arabidopsis_hallerig24792.t142.402327.4964lolium_perennecds.KYUSt_chr4.1068334.26922.2222
g24792arabidopsis_hallerig24792.t136.179526.1939lolium_perennecds.KYUSt_chr4.1068461.576444.5813
g24792arabidopsis_hallerig24792.t162.373445.152avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0001806.156.63640.9987
g24792arabidopsis_hallerig24792.t162.373445.2967avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0000833.156.63641.1301
g24792arabidopsis_hallerig24792.t148.769933.864avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0001469.154.442637.8029
g24792arabidopsis_hallerig24792.t162.373445.2967avena_sativa_sangAVESA.00010b.r2.7CG0701840.1.CDS56.63641.1301
g24792arabidopsis_hallerig24792.t138.060827.2069avena_sativa_sangAVESA.00010b.r2.7CG0701900.1.CDS61.592544.0281
g24792arabidopsis_hallerig24792.t162.373445.152avena_sativa_sangAVESA.00010b.r2.4DG0749960.1.CDS56.63640.9987
g24792arabidopsis_hallerig24792.t162.807543.8495oryza_longistaminataKN538836.1_FGP00433.256723.2184
g24792arabidopsis_hallerig24792.t161.794544.7178oryza_rufipogonORUFI03G34960.156.781941.0904
g24792arabidopsis_hallerig24792.t160.926243.9942oryza_brachyanthaOB03G40660.155.761640.2649
g24792arabidopsis_hallerig24792.t162.662844.5731oryza_punctataOPUNC03G30780.157.656541.012
g24792arabidopsis_hallerig24792.t161.794544.7178oryza_glaberrimaORGLA03G0306000.156.258240.7115
g24792arabidopsis_hallerig24792.t161.649844.5731secale_cerealeSECCE5Rv1G0351650.154.755839.5887
g24792arabidopsis_hallerig24792.t163.820544.8625setaria_viridisTKV9143958.488141.1141
g24792arabidopsis_hallerig24792.t163.09744.7178sorghum_bicolorEER9348357.068140.445
g24792arabidopsis_hallerig24792.t163.386444.5731setaria_italicaKQK8717758.090240.8488
g24792arabidopsis_hallerig24792.t162.228745.0072triticum_aestivumTraesCS5A02G380400.254.361639.3173
g24792arabidopsis_hallerig24792.t162.518145.2967triticum_aestivumTraesCS5D02G390200.153.865339.0274
g24792arabidopsis_hallerig24792.t162.083944.7178triticum_aestivumTraesCS5B02G384000.154.510839.263
g24792arabidopsis_hallerig24792.t162.662844.2836zea_maysZm00001eb056720_P00156.749740.1049
g24792arabidopsis_hallerig24792.t163.241747.4674ananas_comosusAco004202.1.mrna153.619640.2454
g24792arabidopsis_hallerig24792.t161.939244.7178triticum_turgidumTRITD5Bv1G195850.254.522339.3631
g24792arabidopsis_hallerig24792.t130.101317.2214caenorhabditis_elegansB0361.2a.145.217425.8696
g24792arabidopsis_hallerig24792.t137.192522.8654drosophila_melanogasterFBpp007388737.40922.9985
g24792arabidopsis_hallerig24792.t132.850921.9971amborella_trichopodaERN0523866.764744.7059
g24792arabidopsis_hallerig24792.t162.083948.191amborella_trichopodaERN0138469.983754.323
g24792arabidopsis_hallerig24792.t111.14339.26194amborella_trichopodaERN0569776.237663.3663
g24792arabidopsis_hallerig24792.t160.49246.4544corylus_avellanaCav08g02670.t177.264359.3346
g24792arabidopsis_hallerig24792.t169.030453.4009corylus_avellanaCav04g13340.t151.01639.4652
g24792arabidopsis_hallerig24792.t171.201257.453gossypium_raimondiiKJB6502364.062551.6927
g24792arabidopsis_hallerig24792.t122.431314.9059brachypodium_distachyonKQK1328868.281945.3745
g24792arabidopsis_hallerig24792.t159.044943.4153brachypodium_distachyonPNT7417165.806448.3871
g24792arabidopsis_hallerig24792.t146.599126.6281homo_sapiensENSP0000028225136.017920.5817
g24792arabidopsis_hallerig24792.t168.74152.822fraxinus_excelsiorFRAEX38873_v2_000278180.2.cds58.569745.0062
g24792arabidopsis_hallerig24792.t162.083944.8625oryza_glumipatulaOGLUM03G33240.157.123841.2783
g24792arabidopsis_hallerig24792.t163.09746.4544eragrostis_curvulaTVU4511957.29342.1813
g24792arabidopsis_hallerig24792.t161.649844.5731oryza_indicaBGIOSGA013531-PA56.126540.5797
g24792arabidopsis_hallerig24792.t172.648355.4269vitis_viniferaVitvi05g00661_P00161.219546.7073
g24792arabidopsis_hallerig24792.t168.306852.2431nicotiana_attenuataOIT2776460.824746.5206
g24792arabidopsis_hallerig24792.t167.149151.9537coffea_canephoraCDO9917458.145444.9875
g24792arabidopsis_hallerig24792.t162.083947.9016coffea_canephoraCDP1939868.095252.5397
g24792arabidopsis_hallerig24792.t123.878417.6556ipomoea_trilobaitb08g08110.t167.901250.2058
g24792arabidopsis_hallerig24792.t167.438551.2301ipomoea_trilobaitb14g10950.t161.154946.4567
g24792arabidopsis_hallerig24792.t162.228745.0072triticum_urartuTuG1812G0500004095.01.T0154.637939.5172
g24792arabidopsis_hallerig24792.t119.681615.919triticum_urartuTuG1812G0700000805.01.T0168.686955.5556
g24792arabidopsis_hallerig24792.t161.939244.7178oryza_meridionalisOMERI03G30980.156.990741.1451
g24792arabidopsis_hallerig24792.t113.169311.5774prunus_aviumPav_sc0006098.1_g100.1.br:mrna53.846247.3373
g24792arabidopsis_hallerig24792.t163.675849.2041prunus_aviumPav_sc0006098.1_g080.1.mk:mrna57.068744.0986
g24792arabidopsis_hallerig24792.t161.505144.4284oryza_sativaOs03t0740700-0155.994740.448
g24792arabidopsis_hallerig24792.t164.254749.6382pistacia_veracds-EVM0016743.164.441249.7823
g24792arabidopsis_hallerig24792.t172.358957.1635quercus_subercds-POF18986.161.881248.8861
g24792arabidopsis_hallerig24792.t129.088317.2214galdieria_sulphurariaEME3033548.550728.744
g24792arabidopsis_hallerig24792.t142.402326.0492ciona_savignyiENSCSAVP0000001871238.859423.8727
g24792arabidopsis_hallerig24792.t166.714951.3748chenopodium_quinoaAUR62039385-RA:cds65.205150.2122
g24792arabidopsis_hallerig24792.t165.557250.6512chenopodium_quinoaAUR62014577-RA:cds68.532552.9501
g24792arabidopsis_hallerig24792.t160.202644.4284dioscorea_rotundataDRNTG_02924.255.172440.7162
g24792arabidopsis_hallerig24792.t172.358955.7164citrus_clementinaESR3339963.613248.9822
g24792arabidopsis_hallerig24792.t159.334345.5861citrus_clementinaESR3420261.74747.4398
g24792arabidopsis_hallerig24792.t169.75455.2822juglans_regiacds.Jr12_14960_p166.75952.9086
g24792arabidopsis_hallerig24792.t171.345956.0058juglans_regiacds.Jr12_14950_p164.02650.2597
g24792arabidopsis_hallerig24792.t124.312617.8003ostreococcus_lucimarinusABO9834564.864947.4903
g24792arabidopsis_hallerig24792.t171.056454.848actinidia_chinensisPSR9665460.46846.6749
g24792arabidopsis_hallerig24792.t135.166425.4703actinidia_chinensisPSS1596847.553834.4423
g24792arabidopsis_hallerig24792.t160.636843.8495leersia_perrieriLPERR03G28120.255.496740.1325
g24792arabidopsis_hallerig24792.t115.05079.84081aegilops_tauschiiAET6Gv20360400.660.465139.5349
g24792arabidopsis_hallerig24792.t118.379214.4718aegilops_tauschiiAET7Gv20197300.171.348356.1798
g24792arabidopsis_hallerig24792.t162.083944.8625aegilops_tauschiiAET5Gv20887400.146.328333.4773
g24792arabidopsis_hallerig24792.t160.926246.4544musa_acuminataMa03_p30450.253.630640.8917
g24792arabidopsis_hallerig24792.t148.480534.5876selaginella_moellendorffiiEFJ3501961.0243.5337
g24792arabidopsis_hallerig24792.t148.625234.877selaginella_moellendorffiiEFJ3245961.202243.898
g24792arabidopsis_hallerig24792.t163.241745.2967panicum_halliiPUZ3709957.349141.0761
g24792arabidopsis_hallerig24792.t172.214257.3083quercus_lobataQL02p053474:mrna64.721151.3619
g24792arabidopsis_hallerig24792.t120.984115.0507quercus_lobataQL06p015868:mrna62.231844.6352
g24792arabidopsis_hallerig24792.t187.69981.7656eutrema_salsugineumESQ2973788.726282.7233
g24792arabidopsis_hallerig24792.t130.535522.2865kalanchoe_fedtschenkoiKaladp0018s0243.1.v1.167.845749.5177
g24792arabidopsis_hallerig24792.t125.615121.563kalanchoe_fedtschenkoiKaladp0082s0173.1.v1.188.944774.8744
g24792arabidopsis_hallerig24792.t141.244631.1143kalanchoe_fedtschenkoiKaladp1220s0001.1.v1.149.738237.5218
g24792arabidopsis_hallerig24792.t162.228744.5731hordeum_vulgareHORVU.MOREX.r3.5HG0509380.154.430438.9873
g24792arabidopsis_hallerig24792.t170.188155.1375rosa_chinensisPRQ3637362.259348.9089
g24792arabidopsis_hallerig24792.t169.464554.7033rosa_chinensisPRQ2820161.776148.6486
g24792arabidopsis_hallerig24792.t161.794544.7178oryza_barthiiOBART03G33560.156.781941.0904
g24792arabidopsis_hallerig24792.t158.755440.521chara_brauniiGBG8621439.84327.4779
g24792arabidopsis_hallerig24792.t170.622353.835corymbia_citriodoracds-KAF8021841.162.007647.2681
g24792arabidopsis_hallerig24792.t184.659977.2793brassica_rapa_ro18A09p022290.1_BraROA.187.183379.5827
g24792arabidopsis_hallerig24792.t169.175153.1114olea_europaeaOE9A099466C159.012345.3086
g24792arabidopsis_hallerig24792.t170.76754.1245eucalyptus_grandisKCW6523361.201546.8085
g24792arabidopsis_hallerig24792.t194.500790.7381camelina_sativaCsa07g026160.190.694487.0833
g24792arabidopsis_hallerig24792.t194.645491.0275camelina_sativaCsa05g062080.195.474491.8248
g24792arabidopsis_hallerig24792.t190.303986.3965camelina_sativaCsa17g098600.172.305969.1773
g24792arabidopsis_hallerig24792.t165.701951.3748daucus_carotaKZM8709559.894546.8338
g24792arabidopsis_hallerig24792.t163.531144.8625digitaria_exilisDexi9B01G0008990.1:cds57.992140.9511
g24792arabidopsis_hallerig24792.t163.386444.7178digitaria_exilisDexi9A01G0009370.1:cds58.090240.9814
g24792arabidopsis_hallerig24792.t162.807546.0203eragrostis_tefEt_4A_035484.CDS56.880741.6776
g24792arabidopsis_hallerig24792.t162.952246.5991eragrostis_tefEt_4B_037891.CDS57.161642.3127
g24792arabidopsis_hallerig24792.t160.781543.8495triticum_dicoccoidesTRIDC5BG059580.258.171741.9668
g24792arabidopsis_hallerig24792.t159.913243.5601triticum_dicoccoidesTRIDC5AG055610.261.424344.6588
g24792arabidopsis_hallerig24792.t198.98797.3951arabidopsis_lyratascaffold_105587.198.98797.3951
g24792arabidopsis_hallerig24792.t161.505143.8495saccharum_spontaneumSspon.01G0028060-2B-mRNA-1:cds56.291440.1325
g24792arabidopsis_hallerig24792.t166.13649.4935nymphaea_colorataNC1G0133230.1:cds35.675326.6979
g24792arabidopsis_hallerig24792.t163.675845.8755echinochloa_crusgalliscaffold20.930.cds57.97141.7655
g24792arabidopsis_hallerig24792.t110.13028.53835echinochloa_crusgalliscaffold35.361.cds56.910647.9675
g24792arabidopsis_hallerig24792.t163.386445.8755echinochloa_crusgalliscaffold35.197.cds57.631641.7105
g24792arabidopsis_hallerig24792.t162.518145.4414echinochloa_crusgalliscaffold3.1175.cds56.91741.3702
g24792arabidopsis_hallerig24792.t184.515276.411brassica_oleraceaBo9g055760.187.294578.9238
g24792arabidopsis_hallerig24792.t172.937857.7424corchorus_capsularisOMO5476465.032351.4839
g24792arabidopsis_hallerig24792.t161.649844.5731oryza_nivaraONIVA10G02970.156.648940.9574
g24792arabidopsis_hallerig24792.t170.76755.7164trifolium_pratenseTp57577_TGAC_v2_mRNA1431262.213748.9822
g24792arabidopsis_hallerig24792.t138.929130.6802trifolium_pratenseTp57577_TGAC_v2_mRNA335678.425761.8076
g24792arabidopsis_hallerig24792.t138.060829.3777cynara_cardunculusKVH1001866.582351.3924
g24792arabidopsis_hallerig24792.t143.270633.5745cynara_cardunculusKVH9944671.531155.5024
g24792arabidopsis_hallerig24792.t119.536914.3271cynara_cardunculusKVH9941043.269231.7308

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression