Description

Ensembl ID g23526 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 2536 bases Strand Minus strand
Position FJVB01000127.1 : 373592 - 376127 RNA binding domain SBDS_domain_II , SBDS
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g23526 SBDS_domain_II PF09377 4.4e-15 1
g23526 SBDS PF01172 1.9e-29 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g23526.t1 1280 369aa g23526.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g23526

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g23526arabidopsis_hallerig23526.t145.799531.1653chondrus_crispusCDF3822967.330745.8167
g23526arabidopsis_hallerig23526.t156.368638.7534chlamydomonas_reinhardtiiPNW8817254.881337.7309
g23526arabidopsis_hallerig23526.t183.197868.0217papaver_somniferumRZC4419278.717964.359
g23526arabidopsis_hallerig23526.t183.197868.2927papaver_somniferumRZC6605878.717964.6154
g23526arabidopsis_hallerig23526.t154.742542.0054papaver_somniferumRZC6229074.814857.4074
g23526arabidopsis_hallerig23526.t166.666751.4905papaver_somniferumRZC6878273.873957.0571
g23526arabidopsis_hallerig23526.t161.246645.5285papaver_somniferumRZC6042959.788444.4444
g23526arabidopsis_hallerig23526.t181.029868.5637cannabis_sativa_femalecds.evm.model.06.183982.596769.8895
g23526arabidopsis_hallerig23526.t173.170755.0135physcomitrium_patensPp3c4_180V3.269.767452.4548
g23526arabidopsis_hallerig23526.t174.796761.7886ficus_caricaFCD_00005769-RA:cds74.796761.7886
g23526arabidopsis_hallerig23526.t185.636970.7317beta_vulgarisKMS9503586.813271.7033
g23526arabidopsis_hallerig23526.t185.907971.0027beta_vulgarisKMS9967687.087971.978
g23526arabidopsis_hallerig23526.t177.506862.3306citrullus_lanatusCla97C08G146650.179.665764.0668
g23526arabidopsis_hallerig23526.t177.235862.0596cucumis_sativusKGN4774179.387263.7883
g23526arabidopsis_hallerig23526.t185.094872.8997theobroma_cacaoEOY1656985.326173.0978
g23526arabidopsis_hallerig23526.t199.18796.477arabidopsis_thalianaAT1G43860.198.918996.2162
g23526arabidopsis_hallerig23526.t177.777863.6856cucumis_meloMELO3C010584.2.179.944365.4596
g23526arabidopsis_hallerig23526.t182.655870.7317populus_trichocarpaPotri.005G186700.1.v4.185.434273.1092
g23526arabidopsis_hallerig23526.t184.010872.6287populus_trichocarpaPotri.002G073200.1.v4.187.078775.2809
g23526arabidopsis_hallerig23526.t193.495987.8049brassica_junceacds.BjuB06g27420S94.520588.7671
g23526arabidopsis_hallerig23526.t193.766988.6179brassica_junceacds.BjuA05g18720S94.794589.589
g23526arabidopsis_hallerig23526.t194.037988.8889brassica_napusCDY7016897.198991.8767
g23526arabidopsis_hallerig23526.t193.766988.6179brassica_napusCDY4094494.794589.589
g23526arabidopsis_hallerig23526.t171.544758.8076malus_domestica_goldenmRNA:MD05G000900078.338364.3917
g23526arabidopsis_hallerig23526.t174.796758.5366marchantia_polymorphaPTQ4935772.062756.3969
g23526arabidopsis_hallerig23526.t182.926868.0217prunus_dulcisVVA3129280.952466.4021
g23526arabidopsis_hallerig23526.t182.384867.7507prunus_persicaONH8978980.423366.1376
g23526arabidopsis_hallerig23526.t178.590863.6856cajanus_cajanC.cajan_04666.t81.005665.6425
g23526arabidopsis_hallerig23526.t178.048864.2276glycine_maxKRH2984681.126866.7606
g23526arabidopsis_hallerig23526.t179.132864.7696glycine_maxKRH1592381.564266.7598
g23526arabidopsis_hallerig23526.t178.319862.8726lupinus_angustifoliusOIW0723580.501464.624
g23526arabidopsis_hallerig23526.t177.506862.6016lupinus_angustifoliusOIV9071079.444464.1667
g23526arabidopsis_hallerig23526.t178.319862.8726lupinus_angustifoliusOIW0723480.501464.624
g23526arabidopsis_hallerig23526.t178.590862.3306medicago_truncatulaKEH2707981.005664.2458
g23526arabidopsis_hallerig23526.t178.590865.8537phaseolus_vulgarisESW1917481.005667.8771
g23526arabidopsis_hallerig23526.t177.506862.0596pisum_sativumPsat1g039480.1.cds79.665763.7883
g23526arabidopsis_hallerig23526.t179.674866.1247vigna_radiataVradi0443s00030.181.894167.9666
g23526arabidopsis_hallerig23526.t179.674866.1247vigna_unguiculataVigun06g113500.1.v1.282.122968.1564
g23526arabidopsis_hallerig23526.t179.945866.6667vigna_angularisKOM5564582.402268.7151
g23526arabidopsis_hallerig23526.t184.010872.0867manihot_esculentaOAY5838587.078774.7191
g23526arabidopsis_hallerig23526.t183.739870.1897capsicum_annuumPHT8388383.739870.1897
g23526arabidopsis_hallerig23526.t186.449971.8157solanum_tuberosumPGSC0003DMT40006394285.752771.2366
g23526arabidopsis_hallerig23526.t186.449970.7317solanum_lycopersicumSolyc04g064570.3.185.752770.1613
g23526arabidopsis_hallerig23526.t179.674868.5637helianthus_annuusmRNA:HanXRQr2_Chr04g015694184.482872.7011
g23526arabidopsis_hallerig23526.t183.739870.4607lactuca_sativacds-PLY91556.184.196270.8447
g23526arabidopsis_hallerig23526.t174.254758.8076lolium_perennecds.KYUSt_chr2.4790275.690659.9448
g23526arabidopsis_hallerig23526.t174.796759.8916avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0002052.176.454361.2188
g23526arabidopsis_hallerig23526.t174.254759.3496avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0002742.176.750761.3445
g23526arabidopsis_hallerig23526.t174.525759.8916avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0001978.176.177361.2188
g23526arabidopsis_hallerig23526.t174.254759.3496avena_sativa_sangAVESA.00010b.r2.2CG0317740.1.CDS76.750761.3445
g23526arabidopsis_hallerig23526.t174.525759.8916avena_sativa_sangAVESA.00010b.r2.2DG0364590.1.CDS76.177361.2188
g23526arabidopsis_hallerig23526.t174.796759.8916avena_sativa_sangAVESA.00010b.r2.2AG0238940.1.CDS76.454361.2188
g23526arabidopsis_hallerig23526.t176.151859.8916oryza_longistaminataKN538777.1_FGP02367.548153.125
g23526arabidopsis_hallerig23526.t175.880859.8916oryza_rufipogonORUFI08G00560.161.269148.3589
g23526arabidopsis_hallerig23526.t175.609859.0786oryza_brachyanthaOB03G13530.178.151361.0644
g23526arabidopsis_hallerig23526.t175.609859.6206oryza_punctataOPUNC08G00520.278.151361.6246
g23526arabidopsis_hallerig23526.t172.086755.5556secale_cerealeSECCE2Rv1G0118530.173.278256.4738
g23526arabidopsis_hallerig23526.t175.880860.7046setaria_viridisTKW0809378.873263.0986
g23526arabidopsis_hallerig23526.t175.338860.9756sorghum_bicolorEES1437178.309963.3803
g23526arabidopsis_hallerig23526.t175.880860.7046setaria_italicaKQL0020368.126554.5012
g23526arabidopsis_hallerig23526.t172.628755.2846triticum_aestivumTraesCS2B02G444700.273.829256.1983
g23526arabidopsis_hallerig23526.t171.815754.7425triticum_aestivumTraesCS2A02G424900.173.002855.6474
g23526arabidopsis_hallerig23526.t172.628755.0135triticum_aestivumTraesCS2D02G422900.173.829255.9229
g23526arabidopsis_hallerig23526.t174.525759.6206zea_maysZm00001eb260230_P00177.464861.9718
g23526arabidopsis_hallerig23526.t183.197868.2927ananas_comosusAco019356.1.mrna185.754270.3911
g23526arabidopsis_hallerig23526.t180.216862.6016asparagus_officinalisONK7254782.222264.1667
g23526arabidopsis_hallerig23526.t171.815754.7425triticum_turgidumTRITD2Av1G247980.173.002855.6474
g23526arabidopsis_hallerig23526.t172.628755.2846triticum_turgidumTRITD2Bv1G209990.173.829256.1983
g23526arabidopsis_hallerig23526.t145.799530.8943caenorhabditis_elegansW06E11.4.166.798445.0593
g23526arabidopsis_hallerig23526.t142.276430.6233drosophila_melanogasterFBpp007665261.904844.8413
g23526arabidopsis_hallerig23526.t182.113868.8347amborella_trichopodaERN1986384.401170.7521
g23526arabidopsis_hallerig23526.t181.571866.9377corylus_avellanaCav06g03400.t183.379568.4211
g23526arabidopsis_hallerig23526.t185.907973.4417gossypium_raimondiiKJB2908585.907973.4417
g23526arabidopsis_hallerig23526.t175.067759.0786brachypodium_distachyonKQJ8454376.731360.3878
g23526arabidopsis_hallerig23526.t148.238534.9594homo_sapiensENSP0000024686871.251.6
g23526arabidopsis_hallerig23526.t175.067762.6016fraxinus_excelsiorFRAEX38873_v2_000261600.2.cds80.057866.763
g23526arabidopsis_hallerig23526.t182.384870.1897fraxinus_excelsiorFRAEX38873_v2_000194470.2.cds85.154172.549
g23526arabidopsis_hallerig23526.t175.880859.8916oryza_glumipatulaOGLUM08G00580.161.269148.3589
g23526arabidopsis_hallerig23526.t161.246649.3225eragrostis_curvulaTVU4376782.783966.6667
g23526arabidopsis_hallerig23526.t175.880859.8916oryza_indicaBGIOSGA027848-PA78.431461.9048
g23526arabidopsis_hallerig23526.t184.552871.0027vitis_viniferaVitvi18g01212_P00187.150873.1844
g23526arabidopsis_hallerig23526.t185.365972.0867nicotiana_attenuataOIT0225184.677471.5054
g23526arabidopsis_hallerig23526.t183.739871.0027coffea_canephoraCDP1199386.797873.5955
g23526arabidopsis_hallerig23526.t184.823871.8157ipomoea_trilobaitb01g29400.t186.703673.4072
g23526arabidopsis_hallerig23526.t183.468870.4607ipomoea_trilobaitb14g05430.t185.318672.0222
g23526arabidopsis_hallerig23526.t172.628755.5556triticum_urartuTuG1812G0200004759.01.T0173.829256.4738
g23526arabidopsis_hallerig23526.t176.151859.8916oryza_meridionalisOMERI08G00890.177.197860.7143
g23526arabidopsis_hallerig23526.t176.151859.8916oryza_meridionalisOMERI08G00870.177.197860.7143
g23526arabidopsis_hallerig23526.t182.926868.2927prunus_aviumPav_sc0005418.1_g100.1.mk:mrna80.952466.6667
g23526arabidopsis_hallerig23526.t175.880859.8916oryza_sativaOs08t0107500-0178.431461.9048
g23526arabidopsis_hallerig23526.t185.094870.4607pistacia_veracds-EVM0000801.190.229974.7126
g23526arabidopsis_hallerig23526.t180.758867.2087quercus_subercds-POE86741.182.548568.6981
g23526arabidopsis_hallerig23526.t155.284647.9675quercus_subercds-POF10161.187.179575.641
g23526arabidopsis_hallerig23526.t146.612532.2493galdieria_sulphurariaEME2717964.661744.7368
g23526arabidopsis_hallerig23526.t146.070530.3523ciona_savignyiENSCSAVP000000201246844.8
g23526arabidopsis_hallerig23526.t183.197869.3767chenopodium_quinoaAUR62027497-RA:cds85.515371.3092
g23526arabidopsis_hallerig23526.t183.197868.5637chenopodium_quinoaAUR62033983-RA:cds85.515370.4735
g23526arabidopsis_hallerig23526.t155.555648.7805dioscorea_rotundataDRNTG_25900.191.928380.7175
g23526arabidopsis_hallerig23526.t186.449972.8997citrus_clementinaESR4758989.355775.3501
g23526arabidopsis_hallerig23526.t169.376757.1816juglans_regiacds.Jr15_02000_p178.769264.9231
g23526arabidopsis_hallerig23526.t179.674867.7507juglans_regiacds.Jr15_01990_p169.668259.2417
g23526arabidopsis_hallerig23526.t144.173431.1653ostreococcus_lucimarinusABO9671169.067848.7288
g23526arabidopsis_hallerig23526.t140.108423.8482saccharomyces_cerevisiaeYLR022C59.235.2
g23526arabidopsis_hallerig23526.t183.468871.2737actinidia_chinensisPSS0042086.274573.6695
g23526arabidopsis_hallerig23526.t183.468872.6287actinidia_chinensisPSS3175386.516975.2809
g23526arabidopsis_hallerig23526.t176.151857.7236leersia_perrieriLPERR08G00750.178.491659.4972
g23526arabidopsis_hallerig23526.t121.680215.7182leersia_perrieriLPERR08G00800.173.394553.211
g23526arabidopsis_hallerig23526.t127.642322.2222aegilops_tauschiiAET2Gv20017200.175.555660.7407
g23526arabidopsis_hallerig23526.t172.357755.0135aegilops_tauschiiAET2Gv20939200.173.553755.9229
g23526arabidopsis_hallerig23526.t117.886215.4472musa_acuminataMa05_p01160.180.487869.5122
g23526arabidopsis_hallerig23526.t183.197868.8347musa_acuminataMa11_p17180.186.23671.3483
g23526arabidopsis_hallerig23526.t138.753434.4173selaginella_moellendorffiiEFJ1421488.271678.3951
g23526arabidopsis_hallerig23526.t169.918754.4715selaginella_moellendorffiiEFJ0924572.471956.4607
g23526arabidopsis_hallerig23526.t169.918754.4715selaginella_moellendorffiiEFJ0713472.471956.4607
g23526arabidopsis_hallerig23526.t176.151861.2466panicum_halliiPUZ4979279.154963.662
g23526arabidopsis_hallerig23526.t193.495988.0759arabis_alpinaKFK2428793.243287.8378
g23526arabidopsis_hallerig23526.t181.300867.4797quercus_lobataQL09p029039:mrna83.102568.9751
g23526arabidopsis_hallerig23526.t194.85190.2439eutrema_salsugineumESQ3104695.890491.2329
g23526arabidopsis_hallerig23526.t182.926868.5637kalanchoe_fedtschenkoiKaladp0085s0123.1.v1.186.440771.4689
g23526arabidopsis_hallerig23526.t172.628755.2846hordeum_vulgareHORVU.MOREX.r3.2HG0191300.173.829256.1983
g23526arabidopsis_hallerig23526.t122.493219.5122rosa_chinensisPRQ5152582.178271.2871
g23526arabidopsis_hallerig23526.t183.739867.4797rosa_chinensisPRQ2489981.530365.6992
g23526arabidopsis_hallerig23526.t175.880859.8916oryza_barthiiOBART08G00540.166.037752.1226
g23526arabidopsis_hallerig23526.t153.658535.2304chara_brauniiGBG6497251.968534.1207
g23526arabidopsis_hallerig23526.t184.552871.5447corymbia_citriodoracds-KAF8041092.188.135674.5763
g23526arabidopsis_hallerig23526.t194.037988.8889brassica_rapa_ro18A05p027070.1_BraROA.195.068589.863
g23526arabidopsis_hallerig23526.t185.094878.8618brassica_rapa_ro18A10p011540.1_BraROA.195.731788.7195
g23526arabidopsis_hallerig23526.t183.739871.2737olea_europaeaOE9A007485C186.554673.6695
g23526arabidopsis_hallerig23526.t168.834755.8266olea_europaeaOE9A058324C279.37564.375
g23526arabidopsis_hallerig23526.t183.739871.2737eucalyptus_grandisKCW6515487.288174.2938
g23526arabidopsis_hallerig23526.t144.715428.4553cyanidioschyzon_merolaeCMG027CT59.352537.7698
g23526arabidopsis_hallerig23526.t196.20693.2249camelina_sativaCsa03g046750.140.898639.6313
g23526arabidopsis_hallerig23526.t198.91696.477camelina_sativaCsa14g048920.198.648796.2162
g23526arabidopsis_hallerig23526.t198.64595.664camelina_sativaCsa17g070680.198.378495.4054
g23526arabidopsis_hallerig23526.t184.010872.3577daucus_carotaKZM9282084.699572.9508
g23526arabidopsis_hallerig23526.t184.552873.1707daucus_carotaKZM9739485.245973.7705
g23526arabidopsis_hallerig23526.t176.151860.1626digitaria_exilisDexi5B01G0031430.1:cds74.535858.8859
g23526arabidopsis_hallerig23526.t176.693860.1626digitaria_exilisDexi6A01G0000720.1:cds79.718362.5352
g23526arabidopsis_hallerig23526.t175.880860.1626digitaria_exilisDexi6B01G0000470.1:cds78.873262.5352
g23526arabidopsis_hallerig23526.t138.753433.3333digitaria_exilisDexi5A01G0031180.1:cds71.561.5
g23526arabidopsis_hallerig23526.t149.864542.0054digitaria_exilisDexi6A01G0000700.1:cds86.38572.77
g23526arabidopsis_hallerig23526.t176.422860.1626digitaria_exilisDexiUA01G0025000.1:cds79.436662.5352
g23526arabidopsis_hallerig23526.t175.880860.7046eragrostis_tefEt_8A_057334.CDS78.873263.0986
g23526arabidopsis_hallerig23526.t175.880860.7046eragrostis_tefEt_8B_059697.CDS78.873263.0986
g23526arabidopsis_hallerig23526.t168.563751.7615triticum_dicoccoidesTRIDC2AG061230.172.079854.416
g23526arabidopsis_hallerig23526.t172.628755.5556triticum_dicoccoidesTRIDC2BG064940.173.424756.1644
g23526arabidopsis_hallerig23526.t199.45898.645arabidopsis_lyratafgenesh2_kg.1__3741__AT1G43860.199.189298.3784
g23526arabidopsis_hallerig23526.t175.338860.9756saccharum_spontaneumSspon.06G0012180-1A-mRNA-1:cds78.309963.3803
g23526arabidopsis_hallerig23526.t175.067760.9756saccharum_spontaneumSspon.06G0013310-1P-mRNA-1:cds78.028263.3803
g23526arabidopsis_hallerig23526.t145.257533.3333saccharum_spontaneumSspon.06G0013310-2P-mRNA-1:cds70.168151.6807
g23526arabidopsis_hallerig23526.t175.067760.9756saccharum_spontaneumSspon.06G0013310-4D-mRNA-1:cds78.028263.3803
g23526arabidopsis_hallerig23526.t175.067760.9756saccharum_spontaneumSspon.06G0013310-2B-mRNA-1:cds78.028263.3803
g23526arabidopsis_hallerig23526.t175.067761.2466saccharum_spontaneumSspon.06G0013310-1A-mRNA-1:cds78.028263.662
g23526arabidopsis_hallerig23526.t181.842870.4607nymphaea_colorataNC13G0195090.1:cds84.357572.6257
g23526arabidopsis_hallerig23526.t175.609860.9756echinochloa_crusgalliscaffold20.283.cds78.591663.3803
g23526arabidopsis_hallerig23526.t175.880860.7046echinochloa_crusgalliscaffold260.15.cds63.636450.9091
g23526arabidopsis_hallerig23526.t175.880860.7046echinochloa_crusgalliscaffold233.23.cds78.873263.0986
g23526arabidopsis_hallerig23526.t129.810327.3713brassica_oleraceaBo6g002110.186.614279.5276
g23526arabidopsis_hallerig23526.t193.766988.6179brassica_oleraceaBo5g070770.194.794589.589
g23526arabidopsis_hallerig23526.t185.094872.6287corchorus_capsularisOMO9502981.558469.6104
g23526arabidopsis_hallerig23526.t172.357757.4526oryza_nivaraONIVA08G00500.178.299162.1701
g23526arabidopsis_hallerig23526.t178.590862.6016trifolium_pratenseTp57577_TGAC_v2_mRNA3250681.005664.5251
g23526arabidopsis_hallerig23526.t183.739872.3577cynara_cardunculusKVH9876587.042375.2113

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression