Description

Ensembl ID g21428 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 6261 bases Strand Plus strand
Position FJVB01000100.1 : 220158 - 226418 RNA binding domain Met_10 , TYW3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g21428 Met_10 PF02475 1.3e-33 1
g21428 TYW3 PF02676 4e-60 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g21428.t1 3919 1258aa g21428.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g21428arabidopsis_hallerig11648.t132.150317.119arabidopsis_hallerig21428.t112.24176.51828
g21428arabidopsis_hallerig04531.t133.387419.2869arabidopsis_hallerig21428.t116.37529.45946

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g21428arabidopsis_hallerig21428.t111.84426.75676chondrus_crispusCDF3220633.408119.0583
g21428arabidopsis_hallerig21428.t158.90346.1844papaver_somniferumRZC6565170.909155.5981
g21428arabidopsis_hallerig21428.t158.585146.2639papaver_somniferumRZC4633068.7554.291
g21428arabidopsis_hallerig21428.t160.810849.2051cannabis_sativa_femalecds.evm.model.02.299773.135859.1778
g21428arabidopsis_hallerig21428.t146.502432.8299physcomitrium_patensPp3c9_15020V3.251.724136.5164
g21428arabidopsis_hallerig21428.t156.359344.9126beta_vulgarisKMT0417569.441755.3379
g21428arabidopsis_hallerig21428.t158.90347.6948citrullus_lanatusCla97C01G021630.170.841357.3614
g21428arabidopsis_hallerig21428.t158.426147.2973cucumis_sativusKGN4911366.455753.7975
g21428arabidopsis_hallerig21428.t162.162251.1129theobroma_cacaoEOY2869474.618361.355
g21428arabidopsis_hallerig21428.t177.265575.0397arabidopsis_thalianaAT4G04670.197.688494.8744
g21428arabidopsis_hallerig21428.t156.677345.5485cucumis_meloMELO3C007389.2.169.35855.7393
g21428arabidopsis_hallerig21428.t159.3848.8871populus_trichocarpaPotri.004G015200.4.v4.172.383759.593
g21428arabidopsis_hallerig21428.t171.065266.2957brassica_napusCDX9087588.602682.6561
g21428arabidopsis_hallerig21428.t170.826766.3752brassica_napusCDY2131389.818684.1734
g21428arabidopsis_hallerig21428.t160.015949.0461malus_domestica_goldenmRNA:MD10G027360073.372259.9611
g21428arabidopsis_hallerig21428.t148.728134.7377marchantia_polymorphaPTQ2966756.654340.3882
g21428arabidopsis_hallerig21428.t160.572349.2846prunus_dulcisVVA2159873.481259.7878
g21428arabidopsis_hallerig21428.t160.572349.2846prunus_persicaONI0996373.481259.7878
g21428arabidopsis_hallerig21428.t158.346648.1717cajanus_cajanC.cajan_04424.t68.342656.4246
g21428arabidopsis_hallerig21428.t159.53948.3307glycine_maxKRH5108869.674456.5581
g21428arabidopsis_hallerig21428.t159.53948.1717medicago_truncatulaAES9263171.606157.935
g21428arabidopsis_hallerig21428.t158.346646.7409phaseolus_vulgarisESW2594169.705655.8405
g21428arabidopsis_hallerig21428.t159.3847.6153pisum_sativumPsat4g006680.2.cds71.007656.9392
g21428arabidopsis_hallerig21428.t158.505646.9793vigna_unguiculataVigun03g446700.1.v1.270.769256.8269
g21428arabidopsis_hallerig21428.t114.467411.9237vigna_angularisKOM3380770.817158.3658
g21428arabidopsis_hallerig21428.t145.62837.2019manihot_esculentaOAY2592674.545560.7792
g21428arabidopsis_hallerig21428.t157.710745.5485capsicum_annuumPHT8254670.829355.9024
g21428arabidopsis_hallerig21428.t143.561233.8633solanum_tuberosumPGSC0003DMT40006006773.360157.0281
g21428arabidopsis_hallerig21428.t158.664546.9793solanum_lycopersicumSolyc05g055610.3.171.098356.9364
g21428arabidopsis_hallerig21428.t158.028645.2305sesamum_indicumSIN_1006999.t69.72354.3457
g21428arabidopsis_hallerig21428.t145.230534.4197helianthus_annuusmRNA:HanXRQr2_Chr05g019343174.185156.4537
g21428arabidopsis_hallerig21428.t114.864912.0032helianthus_annuusCDS:HanXRQr2_Chr05g0193441.166.312153.5461
g21428arabidopsis_hallerig21428.t157.869645.31helianthus_annuusmRNA:HanXRQr2_Chr05g019345172.857
g21428arabidopsis_hallerig21428.t157.790144.7536lactuca_sativacds-PLY66853.171.980255.7426
g21428arabidopsis_hallerig21428.t151.987340.461lolium_perennecds.KYUSt_chr2.1953565.728651.1558
g21428arabidopsis_hallerig21428.t154.451542.5278avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000109.362.272748.6364
g21428arabidopsis_hallerig21428.t154.292542.4483avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0000704.262.034548.5014
g21428arabidopsis_hallerig21428.t154.53142.5278avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002672.562.363648.6364
g21428arabidopsis_hallerig21428.t154.292542.4483avena_sativa_sangAVESA.00010b.r2.2CG0275550.1.CDS62.833549.126
g21428arabidopsis_hallerig21428.t144.515133.7838avena_sativa_sangAVESA.00010b.r2.2AG0198480.1.CDS61.470946.652
g21428arabidopsis_hallerig21428.t154.53142.5278avena_sativa_sangAVESA.00010b.r2.2DG0350260.1.CDS63.167649.2634
g21428arabidopsis_hallerig21428.t147.615334.4992oryza_longistaminataKN539000.1_FGP00251.637937.4138
g21428arabidopsis_hallerig21428.t155.325941.3355oryza_rufipogonORUFI07G16640.165.598549.0104
g21428arabidopsis_hallerig21428.t154.53141.0175oryza_brachyanthaOB07G21940.165.583249.3308
g21428arabidopsis_hallerig21428.t155.961841.1765oryza_punctataOPUNC07G14870.166.920249.2395
g21428arabidopsis_hallerig21428.t151.112937.7583oryza_glaberrimaORGLA07G0134000.161.649145.5417
g21428arabidopsis_hallerig21428.t154.769542.9253secale_cerealeSECCE2Rv1G0090130.163.385549.678
g21428arabidopsis_hallerig21428.t154.610542.0509setaria_viridisTKW3498363.493548.8909
g21428arabidopsis_hallerig21428.t154.769542.2099sorghum_bicolorKXG3632063.737349.1212
g21428arabidopsis_hallerig21428.t150.15938.7122setaria_italicaKQL2599062.106347.9331
g21428arabidopsis_hallerig21428.t155.007943.2432triticum_aestivumTraesCS2B02G248800.163.661550.046
g21428arabidopsis_hallerig21428.t154.610543.0843triticum_aestivumTraesCS2D02G229200.163.201549.862
g21428arabidopsis_hallerig21428.t154.53143.0843triticum_aestivumTraesCS2A02G223200.163.109549.862
g21428arabidopsis_hallerig21428.t154.21341.3355zea_maysZm00001eb322630_P00263.148148.1481
g21428arabidopsis_hallerig21428.t112.00329.37997ananas_comosusAco029810.1.mrna184.357565.9218
g21428arabidopsis_hallerig21428.t155.484942.4483ananas_comosusAco010506.1.mrna165.911250.4249
g21428arabidopsis_hallerig21428.t154.610543.1638triticum_turgidumTRITD2Av1G090090.362.739749.589
g21428arabidopsis_hallerig21428.t155.007943.2432triticum_turgidumTRITD2Bv1G093910.263.196349.6804
g21428arabidopsis_hallerig21428.t115.73939.062caenorhabditis_elegansF40F9.10.143.043524.7826
g21428arabidopsis_hallerig21428.t155.484941.9714amborella_trichopodaERN1734662.769847.482
g21428arabidopsis_hallerig21428.t161.446750.7949corylus_avellanaCav02g34790.t174.758261.7988
g21428arabidopsis_hallerig21428.t161.446749.7615gossypium_raimondiiKJB5773674.326960.1923
g21428arabidopsis_hallerig21428.t154.21341.7329brachypodium_distachyonKQK1601963.148148.6111
g21428arabidopsis_hallerig21428.t111.52627.63116homo_sapiensENSP0000035990455.984637.0656
g21428arabidopsis_hallerig21428.t159.618447.3768fraxinus_excelsiorFRAEX38873_v2_000082000.1.cds70.02855.6489
g21428arabidopsis_hallerig21428.t155.325941.3355oryza_glumipatulaOGLUM07G15900.164.864948.4623
g21428arabidopsis_hallerig21428.t154.769542.3688eragrostis_curvulaTVU3889964.272449.7201
g21428arabidopsis_hallerig21428.t152.782241.0175eragrostis_curvulaTVU3888763.846249.6154
g21428arabidopsis_hallerig21428.t155.484941.5739oryza_indicaBGIOSGA025799-PA64.450648.2918
g21428arabidopsis_hallerig21428.t160.492849.6025vitis_viniferaVitvi10g00098_P00173.032659.8848
g21428arabidopsis_hallerig21428.t159.618447.7742nicotiana_attenuataOIT2515671.0956.9668
g21428arabidopsis_hallerig21428.t158.664547.1383coffea_canephoraCDP0439970.01956.2619
g21428arabidopsis_hallerig21428.t159.459547.2973ipomoea_trilobaitb02g03750.t270.234755.8685
g21428arabidopsis_hallerig21428.t154.53143.0843triticum_urartuTuG1812G0200002597.01.T0263.109549.862
g21428arabidopsis_hallerig21428.t155.484941.5739oryza_meridionalisOMERI07G12920.166.035949.4797
g21428arabidopsis_hallerig21428.t160.651848.3307pistacia_veracds-EVM0008130.174.077759.0291
g21428arabidopsis_hallerig21428.t147.933239.1892quercus_subercds-POE67460.174.078660.5651
g21428arabidopsis_hallerig21428.t155.325945.0715quercus_subercds-POE67462.173.572959.9366
g21428arabidopsis_hallerig21428.t111.36725.72337galdieria_sulphurariaEME3213536.294418.2741
g21428arabidopsis_hallerig21428.t114.546910.2544ciona_savignyiENSCSAVP0000000073863.321844.6367
g21428arabidopsis_hallerig21428.t156.836245.469chenopodium_quinoaAUR62021945-RA:cds69.015455.2124
g21428arabidopsis_hallerig21428.t156.518343.1638dioscorea_rotundataDRNTG_24732.166.016750.4178
g21428arabidopsis_hallerig21428.t156.518345.628citrus_clementinaESR6296770.465856.888
g21428arabidopsis_hallerig21428.t160.731350.2385juglans_regiacds.Jr03_11170_p173.1160.4785
g21428arabidopsis_hallerig21428.t114.546911.2878ostreococcus_lucimarinusABO9785665.827351.0791
g21428arabidopsis_hallerig21428.t111.60577.07472saccharomyces_cerevisiaeYGL050W53.479932.6007
g21428arabidopsis_hallerig21428.t158.74447.7742actinidia_chinensisPSS2483670.180457.075
g21428arabidopsis_hallerig21428.t155.087441.1765leersia_perrieriLPERR07G13570.362.885747.0054
g21428arabidopsis_hallerig21428.t154.610543.0843aegilops_tauschiiAET2Gv20475500.563.201549.862
g21428arabidopsis_hallerig21428.t156.915742.7663musa_acuminataMa06_p31180.164.042948.1216
g21428arabidopsis_hallerig21428.t120.508714.8649selaginella_moellendorffiiEFJ1823776.331455.3254
g21428arabidopsis_hallerig21428.t114.467410.8903selaginella_moellendorffiiEFJ2197479.130459.5652
g21428arabidopsis_hallerig21428.t154.133541.7329panicum_halliiPUZ7223763.055648.6111
g21428arabidopsis_hallerig21428.t161.208350.318quercus_lobataQL05p073195:mrna75.048761.6959
g21428arabidopsis_hallerig21428.t174.960371.0652eutrema_salsugineumESQ3812993.644588.7785
g21428arabidopsis_hallerig21428.t111.84429.61844kalanchoe_fedtschenkoiKaladp0068s0183.1.v1.1.CDS.169.95356.8075
g21428arabidopsis_hallerig21428.t125.437220.1113kalanchoe_fedtschenkoiKaladp0068s0184.1.v1.168.817254.4086
g21428arabidopsis_hallerig21428.t133.465826.7091kalanchoe_fedtschenkoiKaladp0042s0332.1.v1.174.513359.469
g21428arabidopsis_hallerig21428.t153.418142.9253kalanchoe_fedtschenkoiKaladp0084s0021.1.v1.171.186457.2034
g21428arabidopsis_hallerig21428.t154.769542.8458hordeum_vulgareHORVU.MOREX.r3.2HG0141420.163.385549.586
g21428arabidopsis_hallerig21428.t160.413448.7281rosa_chinensisPRQ2844974.509860.098
g21428arabidopsis_hallerig21428.t155.564441.4149oryza_barthiiOBART07G16210.164.483448.0627
g21428arabidopsis_hallerig21428.t143.322729.3323chara_brauniiGBG8873337.899925.6606
g21428arabidopsis_hallerig21428.t159.300547.2178corymbia_citriodoracds-KAF8030133.170.77856.3567
g21428arabidopsis_hallerig21428.t171.144766.2957brassica_rapa_ro18A03p031700.1_BraROA.190.678884.4985
g21428arabidopsis_hallerig21428.t158.505646.1049olea_europaeaOE9A026264C169.303254.6139
g21428arabidopsis_hallerig21428.t158.187646.0254eucalyptus_grandisKCW7530769.581755.038
g21428arabidopsis_hallerig21428.t112.40066.12083cyanidioschyzon_merolaeCMJ080CT28.363614
g21428arabidopsis_hallerig21428.t175.516773.0525camelina_sativaCsa08g048610.194.621591.5339
g21428arabidopsis_hallerig21428.t150.953949.3641camelina_sativaCsa02g011480.196.681793.6652
g21428arabidopsis_hallerig21428.t175.675773.2114camelina_sativaCsa13g052430.182.710780.0174
g21428arabidopsis_hallerig21428.t158.585146.1049daucus_carotaKZM8439670.797355.7157
g21428arabidopsis_hallerig21428.t129.014324.1653digitaria_exilisDexi2B01G0026760.1:cds66.003654.9729
g21428arabidopsis_hallerig21428.t128.775823.7679digitaria_exilisDexi2A01G0028160.1:cds63.620452.5483
g21428arabidopsis_hallerig21428.t154.292542.4483eragrostis_tefEt_5A_042399.CDS65.23451.0029
g21428arabidopsis_hallerig21428.t155.007943.0048eragrostis_tefEt_5B_045034.CDS65.842151.4748
g21428arabidopsis_hallerig21428.t154.21342.5278triticum_dicoccoidesTRIDC2BG033540.263.441949.7674
g21428arabidopsis_hallerig21428.t154.610543.1638triticum_dicoccoidesTRIDC2AG029850.362.797149.6344
g21428arabidopsis_hallerig21428.t177.66377.027arabidopsis_lyratafgenesh2_kg.6__3241__AT4G04670.198.092497.2892
g21428arabidopsis_hallerig21428.t153.815641.3355saccharum_spontaneumSspon.02G0048090-1C-mRNA-1:cds62.338947.8821
g21428arabidopsis_hallerig21428.t155.166942.0509nymphaea_colorataNC1G0134790.1:cds62.976448.0036
g21428arabidopsis_hallerig21428.t153.815641.4149echinochloa_crusgalliscaffold43.427.cds63.27148.6916
g21428arabidopsis_hallerig21428.t154.769541.9714echinochloa_crusgalliscaffold58.200.cds63.443848.6188
g21428arabidopsis_hallerig21428.t153.895141.4149echinochloa_crusgalliscaffold239.100.cds63.364548.6916
g21428arabidopsis_hallerig21428.t170.985766.4547brassica_oleraceaBo3g048400.190.11184.3592
g21428arabidopsis_hallerig21428.t162.003250.159corchorus_capsularisOMO7680076.023461.501
g21428arabidopsis_hallerig21428.t155.246441.4149oryza_nivaraONIVA07G14410.265.814449.3371
g21428arabidopsis_hallerig21428.t17.790146.43879trifolium_pratenseTp57577_TGAC_v2_mRNA2102080.991766.9421
g21428arabidopsis_hallerig21428.t154.133542.3688cynara_cardunculusKVH8961972.369856.6419

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression