Description

Ensembl ID g19722 Gene ID Accession -
Symbol Alias - Full Name 50S ribosomal protein L5, chloroplastic
Status Confidence Length 1670 bases Strand Plus strand
Position FJVB01000081.1 : 148186 - 149855 RNA binding domain Ribosomal_L5 , Ribosomal_L5_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g19722 Ribosomal_L5 PF00281 3.4e-24 1
g19722 Ribosomal_L5_C PF00673 4.9e-34 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g19722.t1 1095 264aa g19722.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19722arabidopsis_hallerig17359.t156.521730.4348arabidopsis_hallerig19722.t124.621213.2576
g19722arabidopsis_hallerig07614.t148.901125.2747arabidopsis_hallerig19722.t133.712117.4242
g19722arabidopsis_hallerig15355.t148.901125.2747arabidopsis_hallerig19722.t133.712117.4242
g19722arabidopsis_hallerig16517.t148.901125.2747arabidopsis_hallerig19722.t133.712117.4242

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19722arabidopsis_hallerig19722.t149.242436.7424chondrus_crispusCCP3812372.222253.8889
g19722arabidopsis_hallerig19722.t180.30365.9091papaver_somniferumRZC5714271.140958.3893
g19722arabidopsis_hallerig19722.t180.30365.9091papaver_somniferumRZC7247078.518564.4444
g19722arabidopsis_hallerig19722.t182.954569.3182cannabis_sativa_femalecds.evm.model.02.236482.954569.3182
g19722arabidopsis_hallerig19722.t168.181850.3788physcomitrium_patensPp3c1_25850V3.166.420749.0775
g19722arabidopsis_hallerig19722.t168.560649.6212physcomitrium_patensPp3c2_17110V3.166.544148.1618
g19722arabidopsis_hallerig19722.t182.954570.4545ficus_caricaFCD_00030358-RA:cds80.219868.1319
g19722arabidopsis_hallerig19722.t178.787964.3939beta_vulgarisKMT2041680.308965.6371
g19722arabidopsis_hallerig19722.t179.924268.1818citrullus_lanatusCla97C05G081650.177.859866.4207
g19722arabidopsis_hallerig19722.t171.969762.1212cucumis_sativusKGN5649077.868967.2131
g19722arabidopsis_hallerig19722.t184.848571.9697theobroma_cacaoEOX9587684.210571.4286
g19722arabidopsis_hallerig19722.t198.863697.3485arabidopsis_thalianaAT4G01310.199.618398.0916
g19722arabidopsis_hallerig19722.t179.166767.803cucumis_meloMELO3C006088.2.177.121866.0517
g19722arabidopsis_hallerig19722.t176.136461.3636populus_trichocarpaPotri.014G089100.1.v4.176.717661.8321
g19722arabidopsis_hallerig19722.t183.333369.697populus_trichocarpaPotri.002G154600.1.v4.182.706869.1729
g19722arabidopsis_hallerig19722.t193.181890.5303brassica_junceacds.BjuB08g27380S94.252991.5709
g19722arabidopsis_hallerig19722.t193.181891.2879brassica_junceacds.BjuA09g71150S93.893191.9847
g19722arabidopsis_hallerig19722.t194.69791.6667brassica_junceacds.BjuA03g31100S94.69791.6667
g19722arabidopsis_hallerig19722.t195.454592.803brassica_napusCDX7435495.454592.803
g19722arabidopsis_hallerig19722.t193.181891.2879brassica_napusCDX9188794.252992.3372
g19722arabidopsis_hallerig19722.t193.181891.6667brassica_napusCDY0719094.252992.7203
g19722arabidopsis_hallerig19722.t174.621262.1212malus_domestica_goldenmRNA:MD01G005270075.478962.8353
g19722arabidopsis_hallerig19722.t180.681870.4545malus_domestica_goldenmRNA:MD07G010940061.031553.2951
g19722arabidopsis_hallerig19722.t168.560650.3788marchantia_polymorphaPTQ5034063.066246.3415
g19722arabidopsis_hallerig19722.t182.19770.8333prunus_dulcisVVA2363876.950466.3121
g19722arabidopsis_hallerig19722.t182.19770.8333prunus_persicaONI2321982.824471.374
g19722arabidopsis_hallerig19722.t184.090971.2121cajanus_cajanC.cajan_18309.t81.918869.3727
g19722arabidopsis_hallerig19722.t181.818271.5909glycine_maxKRH4038780.898970.7865
g19722arabidopsis_hallerig19722.t182.19773.4848glycine_maxKRH0084481.273472.6592
g19722arabidopsis_hallerig19722.t179.545569.697medicago_truncatulaAES8027878.358268.6567
g19722arabidopsis_hallerig19722.t181.060668.1818phaseolus_vulgarisESW1178879.850767.1642
g19722arabidopsis_hallerig19722.t179.924268.9394pisum_sativumPsat3g107160.1.cds77.573566.9118
g19722arabidopsis_hallerig19722.t182.954568.9394vigna_radiataVradi04g07030.177.935964.7687
g19722arabidopsis_hallerig19722.t181.818269.3182vigna_unguiculataVigun05g061400.1.v1.280.297468.0297
g19722arabidopsis_hallerig19722.t182.954569.697vigna_angularisKOM3707181.412668.4015
g19722arabidopsis_hallerig19722.t182.954570.4545manihot_esculentaOAY6224582.954570.4545
g19722arabidopsis_hallerig19722.t181.060665.1515capsicum_annuumPHT6295278.966863.4686
g19722arabidopsis_hallerig19722.t181.439467.4242solanum_tuberosumPGSC0003DMT40000439180.827166.9173
g19722arabidopsis_hallerig19722.t181.818268.1818solanum_lycopersicumSolyc09g007560.3.181.509467.9245
g19722arabidopsis_hallerig19722.t180.681869.3182sesamum_indicumSIN_1014103.t80.681869.3182
g19722arabidopsis_hallerig19722.t181.818268.1818helianthus_annuusmRNA:HanXRQr2_Chr06g024643182.442768.7023
g19722arabidopsis_hallerig19722.t181.818265.9091lactuca_sativacds-PLY64215.181.818265.9091
g19722arabidopsis_hallerig19722.t172.348555.6818lolium_perennecds.KYUSt_chr4.5161270.220654.0441
g19722arabidopsis_hallerig19722.t171.212153.7879avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0000986.169.117652.2059
g19722arabidopsis_hallerig19722.t170.833353.4091avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0002537.16851.2727
g19722arabidopsis_hallerig19722.t170.833353.0303avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0003506.168.7551.4706
g19722arabidopsis_hallerig19722.t171.212153.7879avena_sativa_sangAVESA.00010b.r2.4CG1272250.1.CDS69.117652.2059
g19722arabidopsis_hallerig19722.t170.833353.0303avena_sativa_sangAVESA.00010b.r2.1DG0124860.1.CDS68.7551.4706
g19722arabidopsis_hallerig19722.t170.833353.4091avena_sativa_sangAVESA.00010b.r2.4AG0627640.1.CDS60.912145.9283
g19722arabidopsis_hallerig19722.t171.969755.303oryza_rufipogonORUFI03G01710.168.100452.3298
g19722arabidopsis_hallerig19722.t157.954546.5909oryza_brachyanthaOB03G11920.177.272762.1212
g19722arabidopsis_hallerig19722.t171.969755.303oryza_punctataOPUNC03G01770.168.100452.3298
g19722arabidopsis_hallerig19722.t171.969755.303oryza_glaberrimaORGLA03G0017300.168.100452.3298
g19722arabidopsis_hallerig19722.t171.590955.6818secale_cerealeSECCE5Rv1G0369880.168.478353.2609
g19722arabidopsis_hallerig19722.t172.348555.303setaria_viridisTKV9849268.458852.3298
g19722arabidopsis_hallerig19722.t172.727357.197sorghum_bicolorKXG4029667.844553.3569
g19722arabidopsis_hallerig19722.t172.348555.303setaria_italicaKQK9283968.458852.3298
g19722arabidopsis_hallerig19722.t171.212154.5455triticum_aestivumTraesCS5A02G513500.168.363652.3636
g19722arabidopsis_hallerig19722.t171.212155.303triticum_aestivumTraesCS4B02G344600.268.115952.8986
g19722arabidopsis_hallerig19722.t171.212155.303triticum_aestivumTraesCS4D02G339700.168.115952.8986
g19722arabidopsis_hallerig19722.t172.727356.8182zea_maysZm00001eb001840_P00167.844553.0035
g19722arabidopsis_hallerig19722.t178.409162.8788ananas_comosusAco016607.1.mrna172.377658.042
g19722arabidopsis_hallerig19722.t178.409159.8485asparagus_officinalisONK7292965.714350.1587
g19722arabidopsis_hallerig19722.t171.212155.303triticum_turgidumTRITD4Bv1G193660.268.115952.8986
g19722arabidopsis_hallerig19722.t171.212154.5455triticum_turgidumTRITD5Av1G244910.168.363652.3636
g19722arabidopsis_hallerig19722.t17559.4697amborella_trichopodaERM9648875.572559.9237
g19722arabidopsis_hallerig19722.t184.090970.4545corylus_avellanaCav07g06030.t184.090970.4545
g19722arabidopsis_hallerig19722.t185.227373.4848gossypium_raimondiiKJB0971082.417671.0623
g19722arabidopsis_hallerig19722.t170.454554.1667brachypodium_distachyonKQK2390466.906551.4389
g19722arabidopsis_hallerig19722.t180.681870.0758fraxinus_excelsiorFRAEX38873_v2_000140990.1.cds79.775369.2884
g19722arabidopsis_hallerig19722.t181.439470.8333fraxinus_excelsiorFRAEX38873_v2_000245250.2.cds68.910359.9359
g19722arabidopsis_hallerig19722.t171.969755.303oryza_glumipatulaOGLUM03G01940.156.047243.0678
g19722arabidopsis_hallerig19722.t171.969755.6818eragrostis_curvulaTVU4855268.592153.0686
g19722arabidopsis_hallerig19722.t171.969755.303oryza_indicaBGIOSGA011549-PA68.100452.3298
g19722arabidopsis_hallerig19722.t185.984871.9697vitis_viniferaVitvi15g01055_P00185.660471.6981
g19722arabidopsis_hallerig19722.t181.818268.1818coffea_canephoraCDP0877081.20367.6692
g19722arabidopsis_hallerig19722.t183.333369.697ipomoea_trilobaitb04g00840.t182.39768.9139
g19722arabidopsis_hallerig19722.t171.212154.5455triticum_urartuTuG1812G0500005243.01.T0168.363652.3636
g19722arabidopsis_hallerig19722.t171.590955.303oryza_meridionalisOMERI03G01870.167.741952.3298
g19722arabidopsis_hallerig19722.t182.19771.5909prunus_aviumPav_sc0000254.1_g1240.1.mk:mrna82.824472.1374
g19722arabidopsis_hallerig19722.t171.969755.303oryza_sativaOs03t0125000-0168.100452.3298
g19722arabidopsis_hallerig19722.t185.984872.7273pistacia_veracds-EVM0006299.184.386671.3755
g19722arabidopsis_hallerig19722.t185.984872.7273pistacia_veracds-EVM0031196.184.386671.3755
g19722arabidopsis_hallerig19722.t182.575869.697quercus_subercds-POE83739.182.889769.962
g19722arabidopsis_hallerig19722.t177.651564.3939chenopodium_quinoaAUR62004402-RA:cds79.457465.8915
g19722arabidopsis_hallerig19722.t177.272764.0152chenopodium_quinoaAUR62022608-RA:cds79.069865.5039
g19722arabidopsis_hallerig19722.t152.651539.0152dioscorea_rotundataDRNTG_18837.173.157954.2105
g19722arabidopsis_hallerig19722.t186.742475.3788citrus_clementinaESR5820385.767874.5318
g19722arabidopsis_hallerig19722.t182.575868.1818juglans_regiacds.Jr07_07410_p183.206168.7023
g19722arabidopsis_hallerig19722.t143.560626.1364saccharomyces_cerevisiaeYDR237W39.383623.6301
g19722arabidopsis_hallerig19722.t184.848571.9697actinidia_chinensisPSS2630985.496272.5191
g19722arabidopsis_hallerig19722.t171.212156.0606leersia_perrieriLPERR03G01770.167.625953.2374
g19722arabidopsis_hallerig19722.t177.272762.1212musa_acuminataMa05_p22670.173.91359.4203
g19722arabidopsis_hallerig19722.t173.863657.5758musa_acuminataMa11_p15870.167.944352.9617
g19722arabidopsis_hallerig19722.t157.19743.5606selaginella_moellendorffiiEFJ3561783.888963.8889
g19722arabidopsis_hallerig19722.t155.681843.1818selaginella_moellendorffiiEFJ2434972.772356.4356
g19722arabidopsis_hallerig19722.t171.969756.4394panicum_halliiPUZ4309368.100453.405
g19722arabidopsis_hallerig19722.t197.727394.697arabis_alpinaKFK3071197.358594.3396
g19722arabidopsis_hallerig19722.t182.575870.0758quercus_lobataQL04p055082:mrna82.889770.3422
g19722arabidopsis_hallerig19722.t198.106194.697eutrema_salsugineumESQ3773297.735894.3396
g19722arabidopsis_hallerig19722.t184.090968.1818kalanchoe_fedtschenkoiKaladp0081s0008.1.v1.185.384669.2308
g19722arabidopsis_hallerig19722.t181.060668.9394rosa_chinensisPRQ5826083.593871.0938
g19722arabidopsis_hallerig19722.t171.969755.303oryza_barthiiOBART03G01950.168.100452.3298
g19722arabidopsis_hallerig19722.t182.575869.3182corymbia_citriodoracds-KAF8017071.181.040968.0297
g19722arabidopsis_hallerig19722.t180.681870.0758olea_europaeaOE9A095909C179.477669.0299
g19722arabidopsis_hallerig19722.t181.439469.697olea_europaeaOE9A110949C180.524368.9139
g19722arabidopsis_hallerig19722.t181.439468.5606eucalyptus_grandisKCW7810981.132168.3019
g19722arabidopsis_hallerig19722.t148.106131.0606cyanidioschyzon_merolaeCMV176CT71.751446.3277
g19722arabidopsis_hallerig19722.t198.484896.5909camelina_sativaCsa02g001950.198.484896.5909
g19722arabidopsis_hallerig19722.t188.636485.6061camelina_sativaCsa08g053660.199.152595.7627
g19722arabidopsis_hallerig19722.t181.060670.0758daucus_carotaKZN0610782.307771.1538
g19722arabidopsis_hallerig19722.t172.348555.6818digitaria_exilisDexi9B01G0048040.1:cds67.491251.9435
g19722arabidopsis_hallerig19722.t172.348555.6818digitaria_exilisDexi9A01G0048610.1:cds67.491251.9435
g19722arabidopsis_hallerig19722.t171.590956.4394eragrostis_tefEt_4B_036640.CDS63.210749.8328
g19722arabidopsis_hallerig19722.t171.590956.8182eragrostis_tefEt_4A_034936.CDS63.210750.1672
g19722arabidopsis_hallerig19722.t171.212155.303triticum_dicoccoidesTRIDC4BG058000.167.8752.7076
g19722arabidopsis_hallerig19722.t171.212154.5455triticum_dicoccoidesTRIDC5AG073230.168.363652.3636
g19722arabidopsis_hallerig19722.t199.242499.2424arabidopsis_lyratafgenesh2_kg.6__3575__AT4G01310.199.242499.2424
g19722arabidopsis_hallerig19722.t173.106157.5758saccharum_spontaneumSspon.01G0001460-2B-mRNA-1:cds58.841546.3415
g19722arabidopsis_hallerig19722.t178.030362.8788nymphaea_colorataNC4G0046860.1:cds74.637760.1449
g19722arabidopsis_hallerig19722.t172.727356.4394echinochloa_crusgalliscaffold104.45.cds68.085152.8369
g19722arabidopsis_hallerig19722.t172.348555.6818echinochloa_crusgalliscaffold254.29.cds67.730552.1277
g19722arabidopsis_hallerig19722.t172.348556.0606echinochloa_crusgalliscaffold52.229.cds67.730552.4823
g19722arabidopsis_hallerig19722.t193.181891.6667brassica_oleraceaBo9g003560.194.252992.7203
g19722arabidopsis_hallerig19722.t193.560691.2879brassica_oleraceaBo3g054560.194.63692.3372
g19722arabidopsis_hallerig19722.t184.469774.6212corchorus_capsularisOMO6440484.150974.3396
g19722arabidopsis_hallerig19722.t171.969755.303oryza_nivaraONIVA03G01620.168.100452.3298
g19722arabidopsis_hallerig19722.t179.924270.0758trifolium_pratenseTp57577_TGAC_v2_mRNA2305977.573568.0147
g19722arabidopsis_hallerig19722.t165.909154.5455cynara_cardunculusKVH8908377.678664.2857

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression