Description

Ensembl ID g19474 Gene ID Accession -
Symbol Alias - Full Name Ribonuclease II, chloroplastic/mitochondrial
Status Confidence Length 4643 bases Strand Minus strand
Position FJVB01000078.1 : 453440 - 458082 RNA binding domain RNB
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g19474 RNB PF00773 1.8e-75 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g19474.t1 2762 803aa g19474.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19474arabidopsis_hallerig22189.t129.689214.5766arabidopsis_hallerig19474.t134.495616.9365
g19474arabidopsis_hallerig01326.t123.728813.7476arabidopsis_hallerig19474.t131.382318.1818

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19474arabidopsis_hallerig19474.t144.458327.5218chondrus_crispusCDF3439542.526.3095
g19474arabidopsis_hallerig19474.t145.454529.0162chlamydomonas_reinhardtiiPNW7500333.702721.5143
g19474arabidopsis_hallerig19474.t179.327565.5044papaver_somniferumRZC7583979.525665.6679
g19474arabidopsis_hallerig19474.t176.712363.5118cannabis_sativa_femalecds.evm.model.09.8958066.2338
g19474arabidopsis_hallerig19474.t158.530541.345physcomitrium_patensPp3c14_20610V3.159.872642.293
g19474arabidopsis_hallerig19474.t181.942766.7497ficus_caricaFCD_00030208-RA:cds82.663367.3367
g19474arabidopsis_hallerig19474.t179.20367.1233beta_vulgarisKMT1109479.699267.5439
g19474arabidopsis_hallerig19474.t181.444668.2441citrullus_lanatusCla97C04G074780.182.264268.9308
g19474arabidopsis_hallerig19474.t180.448367.1233cucumis_sativusKGN5425779.851766.6255
g19474arabidopsis_hallerig19474.t183.18870.1121theobroma_cacaoEOY0750784.025270.8176
g19474arabidopsis_hallerig19474.t199.377396.8867arabidopsis_thalianaAT5G02250.199.377396.8867
g19474arabidopsis_hallerig19474.t174.719863.8854cucumis_meloMELO3C003135.2.185.106472.766
g19474arabidopsis_hallerig19474.t183.437171.6065populus_trichocarpaPotri.006G086200.1.v4.184.065272.1455
g19474arabidopsis_hallerig19474.t194.894189.4147brassica_napusCDY1045795.2589.75
g19474arabidopsis_hallerig19474.t195.143290.1619brassica_napusCDY4034395.590.5
g19474arabidopsis_hallerig19474.t182.814470.1121malus_domestica_goldenmRNA:MD04G010260083.437970.6399
g19474arabidopsis_hallerig19474.t183.935270.4857malus_domestica_goldenmRNA:MD12G011780084.355470.8385
g19474arabidopsis_hallerig19474.t158.530539.9751marchantia_polymorphaPTQ4815354.778637.4126
g19474arabidopsis_hallerig19474.t182.565469.863prunus_dulcisVVA2869083.396270.566
g19474arabidopsis_hallerig19474.t182.565469.863prunus_dulcisVVA2869183.396270.566
g19474arabidopsis_hallerig19474.t182.93970.1121prunus_persicaONI0342983.773670.8176
g19474arabidopsis_hallerig19474.t138.978831.8804cajanus_cajanC.cajan_40743.t78.643264.3216
g19474arabidopsis_hallerig19474.t177.459564.1345glycine_maxKRG9954879.438165.7727
g19474arabidopsis_hallerig19474.t178.829465.878lupinus_angustifoliusOIW1889680.636967.3885
g19474arabidopsis_hallerig19474.t161.643852.1793lupinus_angustifoliusOIW0101578.199166.1927
g19474arabidopsis_hallerig19474.t177.833165.1308medicago_truncatulaKEH2905379.415566.4549
g19474arabidopsis_hallerig19474.t133.748427.7709phaseolus_vulgarisESW0598988.273672.6384
g19474arabidopsis_hallerig19474.t135.865530.3861pisum_sativumPsat6g176160.1.cds178.474166.485
g19474arabidopsis_hallerig19474.t177.33563.7609pisum_sativumPsat7g235360.2.cds78.907265.0572
g19474arabidopsis_hallerig19474.t174.221762.6401vigna_radiataVradi09g07140.180.758868.1572
g19474arabidopsis_hallerig19474.t176.587864.259vigna_unguiculataVigun10g067000.1.v1.278.947466.2388
g19474arabidopsis_hallerig19474.t182.316369.6139manihot_esculentaOAY4358083.249470.403
g19474arabidopsis_hallerig19474.t176.463364.1345capsicum_annuumPHT7218784.923971.231
g19474arabidopsis_hallerig19474.t180.821967.2478solanum_tuberosumPGSC0003DMT40002276581.841168.0958
g19474arabidopsis_hallerig19474.t181.195566.9988solanum_lycopersicumSolyc09g010870.3.181.296867.0823
g19474arabidopsis_hallerig19474.t180.697467.8705sesamum_indicumSIN_1011198.t81.40768.4673
g19474arabidopsis_hallerig19474.t179.078565.3798helianthus_annuusmRNA:HanXRQr2_Chr04g018863179.974866.1209
g19474arabidopsis_hallerig19474.t177.957765.2553lactuca_sativacds-PLY81899.178.544565.7466
g19474arabidopsis_hallerig19474.t171.855555.0436lolium_perennecds.KYUSt_chr1.240069.434453.1889
g19474arabidopsis_hallerig19474.t171.855555.7908avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0002585.170.710854.902
g19474arabidopsis_hallerig19474.t149.439638.9788avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000155.279.462.6
g19474arabidopsis_hallerig19474.t171.606556.0399avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002457.170.552155.2147
g19474arabidopsis_hallerig19474.t171.73155.7908avena_sativa_sangAVESA.00010b.r2.3DG0567200.1.CDS74.514957.956
g19474arabidopsis_hallerig19474.t171.606556.0399avena_sativa_sangAVESA.00010b.r2.1DG0146210.1.CDS74.385558.2147
g19474arabidopsis_hallerig19474.t165.87851.9303avena_sativa_sangAVESA.00010b.r2.7AG1190760.1.CDS79.073262.3318
g19474arabidopsis_hallerig19474.t170.610255.1681oryza_longistaminataKN538690.1_FGP00868.23153.3093
g19474arabidopsis_hallerig19474.t122.540518.68oryza_longistaminataAMDW01040389.1_FGP00180.088566.3717
g19474arabidopsis_hallerig19474.t172.727357.4097oryza_rufipogonORUFI01G40160.172.908957.5531
g19474arabidopsis_hallerig19474.t172.602757.5342oryza_brachyanthaOB01G45600.174.743659.2308
g19474arabidopsis_hallerig19474.t165.130850.3113oryza_punctataOPUNC01G35720.173.35256.662
g19474arabidopsis_hallerig19474.t170.610256.4134oryza_glaberrimaORGLA01G0306800.172.785658.1515
g19474arabidopsis_hallerig19474.t172.976356.6625secale_cerealeSECCE1Rv1G0008310.175.808558.8616
g19474arabidopsis_hallerig19474.t173.349957.7833setaria_viridisTKW1765569.952555.1069
g19474arabidopsis_hallerig19474.t173.225457.1606sorghum_bicolorOQU8783975.191858.6957
g19474arabidopsis_hallerig19474.t173.349957.7833setaria_italicaKQL0767475.319759.335
g19474arabidopsis_hallerig19474.t172.727356.538triticum_aestivumTraesCS1D02G056100.175.452258.6563
g19474arabidopsis_hallerig19474.t172.851856.6625triticum_aestivumTraesCS1B02G072200.175.581458.7855
g19474arabidopsis_hallerig19474.t172.727356.2889triticum_aestivumTraesCS1A02G055400.275.452258.3979
g19474arabidopsis_hallerig19474.t172.727356.9116zea_maysZm00001eb148300_P00574.680358.4399
g19474arabidopsis_hallerig19474.t177.33562.6401ananas_comosusAco015451.1.mrna179.209264.1582
g19474arabidopsis_hallerig19474.t176.463363.3873asparagus_officinalisONK7693076.368263.3085
g19474arabidopsis_hallerig19474.t172.851856.6625triticum_turgidumTRITD1Bv1G019590.275.581458.7855
g19474arabidopsis_hallerig19474.t172.976356.6625triticum_turgidumTRITD1Av1G016610.575.710658.7855
g19474arabidopsis_hallerig19474.t178.331363.5118amborella_trichopodaERN0790080.127464.9682
g19474arabidopsis_hallerig19474.t183.18871.6065corylus_avellanaCav09g13940.t184.343472.601
g19474arabidopsis_hallerig19474.t183.810770.9838gossypium_raimondiiKJB3670984.867671.8789
g19474arabidopsis_hallerig19474.t172.602756.2889brachypodium_distachyonKQK0780874.457257.7267
g19474arabidopsis_hallerig19474.t179.327565.6289fraxinus_excelsiorFRAEX38873_v2_000283550.4.cds80.837666.8782
g19474arabidopsis_hallerig19474.t172.851857.4097oryza_glumipatulaOGLUM01G40810.173.033757.5531
g19474arabidopsis_hallerig19474.t173.100957.4097eragrostis_curvulaTVU3678873.651257.8419
g19474arabidopsis_hallerig19474.t172.104656.9116eragrostis_curvulaTVU3677574.90359.1203
g19474arabidopsis_hallerig19474.t172.727357.4097oryza_indicaBGIOSGA000513-PA75.452259.5607
g19474arabidopsis_hallerig19474.t183.312669.6139vitis_viniferaVitvi08g01208_P00284.256970.403
g19474arabidopsis_hallerig19474.t181.07166.9988nicotiana_attenuataOIT0116082.19767.9293
g19474arabidopsis_hallerig19474.t181.07166.2516coffea_canephoraCDP0660581.886866.9182
g19474arabidopsis_hallerig19474.t180.074765.1308ipomoea_trilobaitb15g08670.t378.79964.0931
g19474arabidopsis_hallerig19474.t172.976356.538triticum_urartuTuG1812G0100000713.01.T0175.710658.6563
g19474arabidopsis_hallerig19474.t172.602757.1606oryza_meridionalisOMERI01G33920.172.064356.7367
g19474arabidopsis_hallerig19474.t182.440869.4894prunus_aviumPav_sc0001280.1_g500.1.mk:mrna63.228353.2951
g19474arabidopsis_hallerig19474.t148.816937.858oryza_sativaOs01t0841800-0171.532855.4745
g19474arabidopsis_hallerig19474.t182.93970.4857pistacia_veracds-EVM0021937.184.090971.4646
g19474arabidopsis_hallerig19474.t167.99555.9153pistacia_veracds-EVM0030498.179.360565.2616
g19474arabidopsis_hallerig19474.t183.561670.3611quercus_subercds-POE88592.182.129769.1554
g19474arabidopsis_hallerig19474.t139.103432.6276quercus_subercds-POE98818.189.458774.6439
g19474arabidopsis_hallerig19474.t139.227923.2877galdieria_sulphurariaEME2802840.962324.3173
g19474arabidopsis_hallerig19474.t176.214260.7721dioscorea_rotundataDRNTG_31434.179.069863.0491
g19474arabidopsis_hallerig19474.t183.18870.2366citrus_clementinaESR4233684.13171.0327
g19474arabidopsis_hallerig19474.t183.810770.6102juglans_regiacds.Jr03_23440_p184.867671.5006
g19474arabidopsis_hallerig19474.t140.348725.1557ostreococcus_lucimarinusABO9815550.232631.3178
g19474arabidopsis_hallerig19474.t113.823211.208actinidia_chinensisPSR9828579.285764.2857
g19474arabidopsis_hallerig19474.t182.316369.1158actinidia_chinensisPSS0645483.144769.8113
g19474arabidopsis_hallerig19474.t168.991354.4209leersia_perrieriLPERR01G31670.275.169659.2944
g19474arabidopsis_hallerig19474.t172.727356.4134aegilops_tauschiiAET1Gv20136100.471.132855.1766
g19474arabidopsis_hallerig19474.t177.833163.1382musa_acuminataMa11_p22420.178.914164.0152
g19474arabidopsis_hallerig19474.t152.054835.6164selaginella_moellendorffiiEFJ2868562.481342.7504
g19474arabidopsis_hallerig19474.t151.930335.4919selaginella_moellendorffiiEFJ3064662.425142.6647
g19474arabidopsis_hallerig19474.t173.100957.5342panicum_halliiPUZ5402575.063959.0793
g19474arabidopsis_hallerig19474.t183.810770.8593quercus_lobataQL07p048577:mrna82.98470.1603
g19474arabidopsis_hallerig19474.t196.637692.279eutrema_salsugineumESQ4014296.277991.9355
g19474arabidopsis_hallerig19474.t178.704964.3836kalanchoe_fedtschenkoiKaladp0011s0548.1.v1.179.79865.2778
g19474arabidopsis_hallerig19474.t172.602756.2889hordeum_vulgareHORVU.MOREX.r3.1HG0011270.175.420458.4735
g19474arabidopsis_hallerig19474.t180.074767.995rosa_chinensisPRQ4325383.833171.1864
g19474arabidopsis_hallerig19474.t152.552941.7186oryza_barthiiOBART01G36800.178.293162.1521
g19474arabidopsis_hallerig19474.t148.443331.7559chara_brauniiGBG6687545.710929.9647
g19474arabidopsis_hallerig19474.t149.937742.8394corymbia_citriodoracds-KAF8042411.188.131975.6044
g19474arabidopsis_hallerig19474.t195.143290.0374brassica_rapa_ro18A10p040680.1_BraROA.195.143290.0374
g19474arabidopsis_hallerig19474.t180.572967.4969olea_europaeaOE9A000405C280.572967.4969
g19474arabidopsis_hallerig19474.t181.693668.3686eucalyptus_grandisKCW8894582.515769.0566
g19474arabidopsis_hallerig19474.t197.882994.396camelina_sativaCsa20g002320.197.518694.0447
g19474arabidopsis_hallerig19474.t198.256595.2677camelina_sativaCsa08g062410.178.585776.1952
g19474arabidopsis_hallerig19474.t197.758494.396camelina_sativaCsa13g002110.197.394594.0447
g19474arabidopsis_hallerig19474.t180.199264.6326daucus_carotaKZM8383175.675760.9871
g19474arabidopsis_hallerig19474.t159.277747.3225digitaria_exilisDexi5A01G0032190.1:cds72.671858.0153
g19474arabidopsis_hallerig19474.t171.855556.4134eragrostis_tefEt_3B_029773.CDS75.130258.9844
g19474arabidopsis_hallerig19474.t171.980156.4134eragrostis_tefEt_3A_025395.CDS75.456959.1384
g19474arabidopsis_hallerig19474.t170.361154.7945triticum_dicoccoidesTRIDC1BG009570.1077.823760.6061
g19474arabidopsis_hallerig19474.t149.937739.3524triticum_dicoccoidesTRIDC1AG007550.680.039963.0739
g19474arabidopsis_hallerig19474.t199.501998.5056arabidopsis_lyratafgenesh2_kg.6__137__AT5G02250.199.501998.5056
g19474arabidopsis_hallerig19474.t141.34529.6389saccharum_spontaneumSspon.03G0002860-1P-mRNA-1:cds69.311149.6868
g19474arabidopsis_hallerig19474.t158.65544.8319saccharum_spontaneumSspon.03G0002860-2B-mRNA-1:cds71.689554.7945
g19474arabidopsis_hallerig19474.t156.039942.5903saccharum_spontaneumSspon.03G0002860-3C-mRNA-169.337452.6965
g19474arabidopsis_hallerig19474.t172.727357.9078echinochloa_crusgalliscaffold31.754.cds74.680359.4629
g19474arabidopsis_hallerig19474.t172.478257.2852echinochloa_crusgalliscaffold171.4.cds74.424658.8235
g19474arabidopsis_hallerig19474.t172.602757.5342echinochloa_crusgalliscaffold41.329.cds74.552459.0793
g19474arabidopsis_hallerig19474.t194.894189.6638brassica_oleraceaBo9g184710.195.2590
g19474arabidopsis_hallerig19474.t182.440869.7385corchorus_capsularisOMO6632783.691570.7965
g19474arabidopsis_hallerig19474.t172.727357.4097oryza_nivaraONIVA10G04720.172.456657.196
g19474arabidopsis_hallerig19474.t175.591563.2628trifolium_pratenseTp57577_TGAC_v2_mRNA582577.820565.1282
g19474arabidopsis_hallerig19474.t176.463363.8854cynara_cardunculusKVI1217175.245162.8676

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression