RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	g19377	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1452 bases	Strand	Plus strand
Position	FJVB01000078.1 : 61656 - 63107	RNA binding domain	RRM_1 , Nup35_RRM_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
g19377	RRM_1	PF00076	5.3e-05	1
g19377	Nup35_RRM_2	PF14605	2.4e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	g19377.t1	1138	135aa	g19377.t1

Gene Model

Click here to download g19377's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download g19377's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g19377	arabidopsis_halleri	g15850.t1	18.4502	16.2362	arabidopsis_halleri	g19377.t1	74.0741	65.1852
g19377	arabidopsis_halleri	g15854.t1	35	28.8889	arabidopsis_halleri	g19377.t1	46.6667	38.5185
g19377	arabidopsis_halleri	g15852.t1	44.3548	40.3226	arabidopsis_halleri	g19377.t1	81.4815	74.0741
g19377	arabidopsis_halleri	g29052.t1	39.3805	34.9558	arabidopsis_halleri	g19377.t1	65.9259	58.5185
g19377	arabidopsis_halleri	g20594.t1	29.6137	21.4592	arabidopsis_halleri	g19377.t1	51.1111	37.037
g19377	arabidopsis_halleri	g17723.t1	30.1887	24.1509	arabidopsis_halleri	g19377.t1	59.2593	47.4074
g19377	arabidopsis_halleri	g02544.t1	28.9796	19.5918	arabidopsis_halleri	g19377.t1	52.5926	35.5556
g19377	arabidopsis_halleri	g09489.t1	31.3559	25	arabidopsis_halleri	g19377.t1	54.8148	43.7037

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g19377	arabidopsis_halleri	g19377.t1	58.5185	46.6667	camelina_sativa	Csa13g003440.1	74.5283	59.434
g19377	arabidopsis_halleri	g19377.t1	57.037	45.9259	camelina_sativa	Csa20g003510.1	64.1667	51.6667
g19377	arabidopsis_halleri	g19377.t1	77.037	67.4074	arabidopsis_lyrata	Al_scaffold_0006_249	64.5963	56.5217

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression