Description

Ensembl ID g19250 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 2370 bases Strand Plus strand
Position FJVB01000077.1 : 200153 - 202522 RNA binding domain TruB_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g19250 TruB_N PF01509 2.6e-52 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g19250.t1 1687 529aa g19250.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19250

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g19250arabidopsis_hallerig19250.t134.971625.8979chlamydomonas_reinhardtiiPNW7183546.717234.596
g19250arabidopsis_hallerig19250.t172.589861.8147papaver_somniferumRZC6153473.422662.5239
g19250arabidopsis_hallerig19250.t167.674956.8998papaver_somniferumRZC5883069.785658.6745
g19250arabidopsis_hallerig19250.t176.748666.3516cannabis_sativa_femalecds.evm.model.10.194172.113762.3446
g19250arabidopsis_hallerig19250.t147.826131.569physcomitrium_patensPp3c2_21370V3.144.46429.3497
g19250arabidopsis_hallerig19250.t142.34437.8072ficus_caricaFCD_00001820-RA:cds69.349861.9195
g19250arabidopsis_hallerig19250.t172.211762.3819beta_vulgarisKMT0807471.003761.3383
g19250arabidopsis_hallerig19250.t174.669265.4064citrullus_lanatusCla97C09G180840.172.477163.4862
g19250arabidopsis_hallerig19250.t174.291163.138cucumis_sativusKGN5134870.304159.7496
g19250arabidopsis_hallerig19250.t173.72465.4064theobroma_cacaoEOY0254074.144565.7795
g19250arabidopsis_hallerig19250.t197.542596.2193arabidopsis_thalianaAT5G14460.195.555694.2593
g19250arabidopsis_hallerig19250.t173.91364.2722cucumis_meloMELO3C021593.2.171.87562.5
g19250arabidopsis_hallerig19250.t176.748666.9187populus_trichocarpaPotri.001G343100.1.v4.176.748666.9187
g19250arabidopsis_hallerig19250.t188.846984.6881brassica_junceacds.BjuA10g21020S89.866285.6597
g19250arabidopsis_hallerig19250.t188.657883.7429brassica_junceacds.BjuB02g39330S85.740480.9872
g19250arabidopsis_hallerig19250.t175.992470.8885brassica_napusCDX6958088.157982.2368
g19250arabidopsis_hallerig19250.t186.767582.6087brassica_napusCDY0985690.176885.8546
g19250arabidopsis_hallerig19250.t175.992467.4858malus_domestica_goldenmRNA:MD17G001950075.849167.3585
g19250arabidopsis_hallerig19250.t150.094532.5142marchantia_polymorphaPTQ3301446.902730.4425
g19250arabidopsis_hallerig19250.t175.992466.1626prunus_dulcisVVA178057565.2985
g19250arabidopsis_hallerig19250.t175.803465.9735prunus_persicaONI1972374.813465.1119
g19250arabidopsis_hallerig19250.t170.888562.0038cajanus_cajanC.cajan_31441.t76.687167.0757
g19250arabidopsis_hallerig19250.t170.132362.7599glycine_maxKRH5652576.494868.4536
g19250arabidopsis_hallerig19250.t169.565260.8696lupinus_angustifoliusOIV9032348.936242.8191
g19250arabidopsis_hallerig19250.t174.480162.7599medicago_truncatulaKEH2475768.881158.042
g19250arabidopsis_hallerig19250.t169.187160.4915phaseolus_vulgarisESW2289772.61963.4921
g19250arabidopsis_hallerig19250.t173.156963.138pisum_sativumPsat1g053400.1.cds72.336462.4299
g19250arabidopsis_hallerig19250.t169.565260.8696vigna_radiataVradi01g00250.176.507366.9439
g19250arabidopsis_hallerig19250.t169.943360.6805vigna_unguiculataVigun04g200400.1.v1.276.923166.736
g19250arabidopsis_hallerig19250.t168.6260.3025vigna_angularisKOM2539175.467866.3202
g19250arabidopsis_hallerig19250.t175.614463.8941manihot_esculentaOAY2564174.626963.0597
g19250arabidopsis_hallerig19250.t173.345961.6257capsicum_annuumPHT9196772.523460.9346
g19250arabidopsis_hallerig19250.t173.345961.8147solanum_tuberosumPGSC0003DMT40003283471.586760.3321
g19250arabidopsis_hallerig19250.t166.351656.3327solanum_lycopersicumSolyc02g093460.3.160.205851.1149
g19250arabidopsis_hallerig19250.t160.491551.9849helianthus_annuusmRNA:HanXRQr2_Chr09g038674171.269561.2472
g19250arabidopsis_hallerig19250.t172.022761.2476lactuca_sativacds-PLY72757.174.124563.035
g19250arabidopsis_hallerig19250.t124.574715.5009lolium_perennecds.KYUSt_chr3.1063222.146513.9693
g19250arabidopsis_hallerig19250.t164.650354.6314avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0002709.366.666756.3353
g19250arabidopsis_hallerig19250.t164.650354.4423avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002708.266.796956.25
g19250arabidopsis_hallerig19250.t164.461354.4423avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000034.758.390449.3151
g19250arabidopsis_hallerig19250.t164.650354.6314avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0002711.466.927656.5558
g19250arabidopsis_hallerig19250.t164.650354.6314avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002348.366.407856.1165
g19250arabidopsis_hallerig19250.t164.461354.2533avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0000439.366.731956.1644
g19250arabidopsis_hallerig19250.t164.461354.4423avena_sativa_sangAVESA.00010b.r2.7AG1188330.1.CDS67.524757.0297
g19250arabidopsis_hallerig19250.t155.198547.8261avena_sativa_sangAVESA.00010b.r2.1DG0148530.1.CDS67.436558.4296
g19250arabidopsis_hallerig19250.t163.705155.1985oryza_glaberrimaORGLA05G0006200.169.057459.8361
g19250arabidopsis_hallerig19250.t163.705154.0643secale_cerealeSECCE1Rv1G0000020.166.865156.746
g19250arabidopsis_hallerig19250.t164.083256.1437setaria_viridisTKW2473468.762760.2434
g19250arabidopsis_hallerig19250.t165.217456.1437sorghum_bicolorOQU7721170.408260.6122
g19250arabidopsis_hallerig19250.t164.272256.3327setaria_italicaKQL1341269.529760.9407
g19250arabidopsis_hallerig19250.t163.705153.3081triticum_aestivumTraesCS1A02G024700.167.456.4
g19250arabidopsis_hallerig19250.t164.461354.0643triticum_aestivumTraesCS1B02G031100.167.12656.2992
g19250arabidopsis_hallerig19250.t164.650354.0643triticum_aestivumTraesCS1D02G024800.167.322856.2992
g19250arabidopsis_hallerig19250.t165.028455.1985zea_maysZm00001eb267110_P00169.215358.7525
g19250arabidopsis_hallerig19250.t168.6256.7108asparagus_officinalisONK5834573.630860.8519
g19250arabidopsis_hallerig19250.t163.516153.1191triticum_turgidumTRITD1Av1G005000.167.256.2
g19250arabidopsis_hallerig19250.t164.461354.0643triticum_turgidumTRITD1Bv1G005950.167.12656.2992
g19250arabidopsis_hallerig19250.t170.321457.845amborella_trichopodaERN1384071.676358.9595
g19250arabidopsis_hallerig19250.t176.181566.7297corylus_avellanaCav05g24050.t177.055567.4952
g19250arabidopsis_hallerig19250.t174.291165.9735gossypium_raimondiiKJB7594476.90868.2975
g19250arabidopsis_hallerig19250.t163.516153.8752brachypodium_distachyonKQK0806868.711758.2822
g19250arabidopsis_hallerig19250.t126.08716.4461homo_sapiensENSP0000029874639.541524.9284
g19250arabidopsis_hallerig19250.t152.74144.9905fraxinus_excelsiorFRAEX38873_v2_000283650.3.cds82.300970.2065
g19250arabidopsis_hallerig19250.t126.08716.4461oryza_glumipatulaOGLUM07G23540.122.961714.4759
g19250arabidopsis_hallerig19250.t165.028456.1437eragrostis_curvulaTVU1836670.781961.1111
g19250arabidopsis_hallerig19250.t163.705155.3875oryza_indicaBGIOSGA018957-PA69.057460.041
g19250arabidopsis_hallerig19250.t173.156962.7599vitis_viniferaVitvi14g01673_P00174.423163.8462
g19250arabidopsis_hallerig19250.t173.156962.0038nicotiana_attenuataOIT2288467.775857.4431
g19250arabidopsis_hallerig19250.t161.247653.6862coffea_canephoraCDP1661382.233572.0812
g19250arabidopsis_hallerig19250.t172.967962.7599ipomoea_trilobaitb05g25700.t172.284662.1723
g19250arabidopsis_hallerig19250.t147.637141.7769triticum_urartuTuG1812S0000864700.01.T0173.684264.6199
g19250arabidopsis_hallerig19250.t126.08716.4461oryza_meridionalisOMERI07G19910.123.076914.5485
g19250arabidopsis_hallerig19250.t125.141815.3119prunus_aviumPav_sc0000540.1_g200.1.mk:CDS:122.390613.6364
g19250arabidopsis_hallerig19250.t163.705155.3875oryza_sativaOs05t0108000-0169.057460.041
g19250arabidopsis_hallerig19250.t176.181567.4858pistacia_veracds-EVM0017947.174.080965.625
g19250arabidopsis_hallerig19250.t174.291164.8393quercus_subercds-POF10482.179.71669.574
g19250arabidopsis_hallerig19250.t124.952716.0681galdieria_sulphurariaEME292824830.9091
g19250arabidopsis_hallerig19250.t171.077560.8696chenopodium_quinoaAUR62041944-RA:cds71.212160.9848
g19250arabidopsis_hallerig19250.t168.809158.2231dioscorea_rotundataDRNTG_14046.173.535462.2222
g19250arabidopsis_hallerig19250.t177.504766.7297citrus_clementinaESR5987177.651566.8561
g19250arabidopsis_hallerig19250.t175.803467.8639juglans_regiacds.Jr10_03770_p174.12266.3586
g19250arabidopsis_hallerig19250.t130.245722.1172ostreococcus_lucimarinusABO9738157.347741.9355
g19250arabidopsis_hallerig19250.t123.251412.2873saccharomyces_cerevisiaeYNL292W30.521116.129
g19250arabidopsis_hallerig19250.t174.858265.4064actinidia_chinensisPSR8754773.197863.9556
g19250arabidopsis_hallerig19250.t125.897915.69leersia_perrieriLPERR07G20440.122.757513.7874
g19250arabidopsis_hallerig19250.t164.272253.8752aegilops_tauschiiAET1Gv20053700.566.929156.1024
g19250arabidopsis_hallerig19250.t168.998158.6011musa_acuminataMa06_p08300.171.289160.5469
g19250arabidopsis_hallerig19250.t148.204234.5936selaginella_moellendorffiiEFJ1575557.04740.9396
g19250arabidopsis_hallerig19250.t147.637134.2155selaginella_moellendorffiiEFJ3816556.375840.4922
g19250arabidopsis_hallerig19250.t164.650356.1437panicum_halliiPUZ6363169.230860.1215
g19250arabidopsis_hallerig19250.t185.633381.2854arabis_alpinaKFK2568591.700487.0445
g19250arabidopsis_hallerig19250.t174.291165.0284quercus_lobataQL02p073991:mrna80.532870.4918
g19250arabidopsis_hallerig19250.t194.328989.603eutrema_salsugineumESQ4141193.79789.0977
g19250arabidopsis_hallerig19250.t147.069939.6975kalanchoe_fedtschenkoiKaladp0042s0229.1.v1.178.548966.2461
g19250arabidopsis_hallerig19250.t164.083253.4972hordeum_vulgareHORVU.MOREX.r3.1HG0003900.167.935956.7134
g19250arabidopsis_hallerig19250.t163.894158.034rosa_chinensisPRQ5405384.924677.1357
g19250arabidopsis_hallerig19250.t125.141815.879oryza_barthiiOBART07G23460.122.657614.3101
g19250arabidopsis_hallerig19250.t148.582232.5142chara_brauniiGBG9002345.486730.4425
g19250arabidopsis_hallerig19250.t174.291165.5955corymbia_citriodoracds-KAF8028956.173.733665.1032
g19250arabidopsis_hallerig19250.t189.22584.6881brassica_rapa_ro18A10p030960.1_BraROA.190.421585.8238
g19250arabidopsis_hallerig19250.t172.022761.2476olea_europaeaOE9A023662C172.022761.2476
g19250arabidopsis_hallerig19250.t165.973555.9546olea_europaeaOE9A023025C167.244757.0328
g19250arabidopsis_hallerig19250.t174.102164.4613eucalyptus_grandisKCW5295275.095865.3257
g19250arabidopsis_hallerig19250.t126.843117.2023cyanidioschyzon_merolaeCMF022CT38.692124.7956
g19250arabidopsis_hallerig19250.t195.085191.6824camelina_sativaCsa20g021000.192.633589.3186
g19250arabidopsis_hallerig19250.t194.89692.4386camelina_sativaCsa13g017280.192.110189.7248
g19250arabidopsis_hallerig19250.t195.463193.3837camelina_sativaCsa08g006490.193.173491.1439
g19250arabidopsis_hallerig19250.t173.156962.7599daucus_carotaKZN0250772.471962.1723
g19250arabidopsis_hallerig19250.t154.631446.3138digitaria_exilisDexi3A01G0008290.1:cds64.943855.0562
g19250arabidopsis_hallerig19250.t165.217456.3327eragrostis_tefEt_9B_065275.CDS71.28161.5702
g19250arabidopsis_hallerig19250.t165.028456.1437eragrostis_tefEt_9A_062742.CDS58.803450.7692
g19250arabidopsis_hallerig19250.t164.461354.0643triticum_dicoccoidesTRIDC1BG003380.267.12656.2992
g19250arabidopsis_hallerig19250.t118.525515.5009triticum_dicoccoidesTRIDC2BG085220.349.746241.6244
g19250arabidopsis_hallerig19250.t123.440519.2817triticum_dicoccoidesTRIDC3BG080760.252.320743.038
g19250arabidopsis_hallerig19250.t125.897916.0681triticum_dicoccoidesTRIDC2AG019100.123.539514.6048
g19250arabidopsis_hallerig19250.t198.298797.7316arabidopsis_lyratafgenesh2_kg.6__1422__AT5G14460.196.654396.0967
g19250arabidopsis_hallerig19250.t164.650355.1985saccharum_spontaneumSspon.07G0027710-3D-mRNA-1:cds69.938759.7137
g19250arabidopsis_hallerig19250.t165.028455.1985saccharum_spontaneumSspon.07G0027710-2C-mRNA-1:cds69.076358.6345
g19250arabidopsis_hallerig19250.t154.442346.5028saccharum_spontaneumSspon.07G0027710-1P-mRNA-1:cds59.381450.7216
g19250arabidopsis_hallerig19250.t169.376257.845nymphaea_colorataNC3G0207200.1:cds73.547161.3226
g19250arabidopsis_hallerig19250.t155.576647.8261echinochloa_crusgalliscaffold40.602.cds67.431258.0275
g19250arabidopsis_hallerig19250.t164.839356.1437echinochloa_crusgalliscaffold460.3.cds70.286960.8607
g19250arabidopsis_hallerig19250.t164.839356.5217echinochloa_crusgalliscaffold13.56.cds69.433260.5263
g19250arabidopsis_hallerig19250.t157.466950.4726echinochloa_crusgalliscaffold106.438.cds68.161459.8655
g19250arabidopsis_hallerig19250.t187.901783.9319brassica_oleraceaBo9g165910.184.39280.5808
g19250arabidopsis_hallerig19250.t175.425366.3516corchorus_capsularisOMO5932378.853869.3676
g19250arabidopsis_hallerig19250.t162.003850.8507cynara_cardunculusKVH9287167.351155.2361

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression