RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | g19250 | Gene ID |
|
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
2370 bases |
Strand |
Plus strand |
Position |
FJVB01000077.1 : 200153 - 202522 |
RNA binding domain |
TruB_N |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
g19250 |
TruB_N |
PF01509 |
2.6e-52 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
g19250.t1 |
1687 |
529aa |
g19250.t1 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
g19250 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
g19250 | arabidopsis_halleri | g19250.t1 | 34.9716 | 25.8979 | chlamydomonas_reinhardtii | PNW71835 | 46.7172 | 34.596 |
g19250 | arabidopsis_halleri | g19250.t1 | 72.5898 | 61.8147 | papaver_somniferum | RZC61534 | 73.4226 | 62.5239 |
g19250 | arabidopsis_halleri | g19250.t1 | 67.6749 | 56.8998 | papaver_somniferum | RZC58830 | 69.7856 | 58.6745 |
g19250 | arabidopsis_halleri | g19250.t1 | 76.7486 | 66.3516 | cannabis_sativa_female | cds.evm.model.10.1941 | 72.1137 | 62.3446 |
g19250 | arabidopsis_halleri | g19250.t1 | 47.8261 | 31.569 | physcomitrium_patens | Pp3c2_21370V3.1 | 44.464 | 29.3497 |
g19250 | arabidopsis_halleri | g19250.t1 | 42.344 | 37.8072 | ficus_carica | FCD_00001820-RA:cds | 69.3498 | 61.9195 |
g19250 | arabidopsis_halleri | g19250.t1 | 72.2117 | 62.3819 | beta_vulgaris | KMT08074 | 71.0037 | 61.3383 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.6692 | 65.4064 | citrullus_lanatus | Cla97C09G180840.1 | 72.4771 | 63.4862 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.2911 | 63.138 | cucumis_sativus | KGN51348 | 70.3041 | 59.7496 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.724 | 65.4064 | theobroma_cacao | EOY02540 | 74.1445 | 65.7795 |
g19250 | arabidopsis_halleri | g19250.t1 | 97.5425 | 96.2193 | arabidopsis_thaliana | AT5G14460.1 | 95.5556 | 94.2593 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.913 | 64.2722 | cucumis_melo | MELO3C021593.2.1 | 71.875 | 62.5 |
g19250 | arabidopsis_halleri | g19250.t1 | 76.7486 | 66.9187 | populus_trichocarpa | Potri.001G343100.1.v4.1 | 76.7486 | 66.9187 |
g19250 | arabidopsis_halleri | g19250.t1 | 88.8469 | 84.6881 | brassica_juncea | cds.BjuA10g21020S | 89.8662 | 85.6597 |
g19250 | arabidopsis_halleri | g19250.t1 | 88.6578 | 83.7429 | brassica_juncea | cds.BjuB02g39330S | 85.7404 | 80.9872 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.9924 | 70.8885 | brassica_napus | CDX69580 | 88.1579 | 82.2368 |
g19250 | arabidopsis_halleri | g19250.t1 | 86.7675 | 82.6087 | brassica_napus | CDY09856 | 90.1768 | 85.8546 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.9924 | 67.4858 | malus_domestica_golden | mRNA:MD17G0019500 | 75.8491 | 67.3585 |
g19250 | arabidopsis_halleri | g19250.t1 | 50.0945 | 32.5142 | marchantia_polymorpha | PTQ33014 | 46.9027 | 30.4425 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.9924 | 66.1626 | prunus_dulcis | VVA17805 | 75 | 65.2985 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.8034 | 65.9735 | prunus_persica | ONI19723 | 74.8134 | 65.1119 |
g19250 | arabidopsis_halleri | g19250.t1 | 70.8885 | 62.0038 | cajanus_cajan | C.cajan_31441.t | 76.6871 | 67.0757 |
g19250 | arabidopsis_halleri | g19250.t1 | 70.1323 | 62.7599 | glycine_max | KRH56525 | 76.4948 | 68.4536 |
g19250 | arabidopsis_halleri | g19250.t1 | 69.5652 | 60.8696 | lupinus_angustifolius | OIV90323 | 48.9362 | 42.8191 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.4801 | 62.7599 | medicago_truncatula | KEH24757 | 68.8811 | 58.042 |
g19250 | arabidopsis_halleri | g19250.t1 | 69.1871 | 60.4915 | phaseolus_vulgaris | ESW22897 | 72.619 | 63.4921 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.1569 | 63.138 | pisum_sativum | Psat1g053400.1.cds | 72.3364 | 62.4299 |
g19250 | arabidopsis_halleri | g19250.t1 | 69.5652 | 60.8696 | vigna_radiata | Vradi01g00250.1 | 76.5073 | 66.9439 |
g19250 | arabidopsis_halleri | g19250.t1 | 69.9433 | 60.6805 | vigna_unguiculata | Vigun04g200400.1.v1.2 | 76.9231 | 66.736 |
g19250 | arabidopsis_halleri | g19250.t1 | 68.62 | 60.3025 | vigna_angularis | KOM25391 | 75.4678 | 66.3202 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.6144 | 63.8941 | manihot_esculenta | OAY25641 | 74.6269 | 63.0597 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.3459 | 61.6257 | capsicum_annuum | PHT91967 | 72.5234 | 60.9346 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.3459 | 61.8147 | solanum_tuberosum | PGSC0003DMT400032834 | 71.5867 | 60.3321 |
g19250 | arabidopsis_halleri | g19250.t1 | 66.3516 | 56.3327 | solanum_lycopersicum | Solyc02g093460.3.1 | 60.2058 | 51.1149 |
g19250 | arabidopsis_halleri | g19250.t1 | 60.4915 | 51.9849 | helianthus_annuus | mRNA:HanXRQr2_Chr09g0386741 | 71.2695 | 61.2472 |
g19250 | arabidopsis_halleri | g19250.t1 | 72.0227 | 61.2476 | lactuca_sativa | cds-PLY72757.1 | 74.1245 | 63.035 |
g19250 | arabidopsis_halleri | g19250.t1 | 24.5747 | 15.5009 | lolium_perenne | cds.KYUSt_chr3.10632 | 22.1465 | 13.9693 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 54.6314 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.3Dg0002709.3 | 66.6667 | 56.3353 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 54.4423 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.1Dg0002708.2 | 66.7969 | 56.25 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.4423 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.7Ag0000034.7 | 58.3904 | 49.3151 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 54.6314 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.3Dg0002711.4 | 66.9276 | 56.5558 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 54.6314 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.1Dg0002348.3 | 66.4078 | 56.1165 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.2533 | avena_sativa_ot3098 | cds.AVESA.00001b.r3.7Ag0000439.3 | 66.7319 | 56.1644 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.4423 | avena_sativa_sang | AVESA.00010b.r2.7AG1188330.1.CDS | 67.5247 | 57.0297 |
g19250 | arabidopsis_halleri | g19250.t1 | 55.1985 | 47.8261 | avena_sativa_sang | AVESA.00010b.r2.1DG0148530.1.CDS | 67.4365 | 58.4296 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.7051 | 55.1985 | oryza_glaberrima | ORGLA05G0006200.1 | 69.0574 | 59.8361 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.7051 | 54.0643 | secale_cereale | SECCE1Rv1G0000020.1 | 66.8651 | 56.746 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.0832 | 56.1437 | setaria_viridis | TKW24734 | 68.7627 | 60.2434 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.2174 | 56.1437 | sorghum_bicolor | OQU77211 | 70.4082 | 60.6122 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.2722 | 56.3327 | setaria_italica | KQL13412 | 69.5297 | 60.9407 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.7051 | 53.3081 | triticum_aestivum | TraesCS1A02G024700.1 | 67.4 | 56.4 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.0643 | triticum_aestivum | TraesCS1B02G031100.1 | 67.126 | 56.2992 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 54.0643 | triticum_aestivum | TraesCS1D02G024800.1 | 67.3228 | 56.2992 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.0284 | 55.1985 | zea_mays | Zm00001eb267110_P001 | 69.2153 | 58.7525 |
g19250 | arabidopsis_halleri | g19250.t1 | 68.62 | 56.7108 | asparagus_officinalis | ONK58345 | 73.6308 | 60.8519 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.5161 | 53.1191 | triticum_turgidum | TRITD1Av1G005000.1 | 67.2 | 56.2 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.0643 | triticum_turgidum | TRITD1Bv1G005950.1 | 67.126 | 56.2992 |
g19250 | arabidopsis_halleri | g19250.t1 | 70.3214 | 57.845 | amborella_trichopoda | ERN13840 | 71.6763 | 58.9595 |
g19250 | arabidopsis_halleri | g19250.t1 | 76.1815 | 66.7297 | corylus_avellana | Cav05g24050.t1 | 77.0555 | 67.4952 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.2911 | 65.9735 | gossypium_raimondii | KJB75944 | 76.908 | 68.2975 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.5161 | 53.8752 | brachypodium_distachyon | KQK08068 | 68.7117 | 58.2822 |
g19250 | arabidopsis_halleri | g19250.t1 | 26.087 | 16.4461 | homo_sapiens | ENSP00000298746 | 39.5415 | 24.9284 |
g19250 | arabidopsis_halleri | g19250.t1 | 52.741 | 44.9905 | fraxinus_excelsior | FRAEX38873_v2_000283650.3.cds | 82.3009 | 70.2065 |
g19250 | arabidopsis_halleri | g19250.t1 | 26.087 | 16.4461 | oryza_glumipatula | OGLUM07G23540.1 | 22.9617 | 14.4759 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.0284 | 56.1437 | eragrostis_curvula | TVU18366 | 70.7819 | 61.1111 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.7051 | 55.3875 | oryza_indica | BGIOSGA018957-PA | 69.0574 | 60.041 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.1569 | 62.7599 | vitis_vinifera | Vitvi14g01673_P001 | 74.4231 | 63.8462 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.1569 | 62.0038 | nicotiana_attenuata | OIT22884 | 67.7758 | 57.4431 |
g19250 | arabidopsis_halleri | g19250.t1 | 61.2476 | 53.6862 | coffea_canephora | CDP16613 | 82.2335 | 72.0812 |
g19250 | arabidopsis_halleri | g19250.t1 | 72.9679 | 62.7599 | ipomoea_triloba | itb05g25700.t1 | 72.2846 | 62.1723 |
g19250 | arabidopsis_halleri | g19250.t1 | 47.6371 | 41.7769 | triticum_urartu | TuG1812S0000864700.01.T01 | 73.6842 | 64.6199 |
g19250 | arabidopsis_halleri | g19250.t1 | 26.087 | 16.4461 | oryza_meridionalis | OMERI07G19910.1 | 23.0769 | 14.5485 |
g19250 | arabidopsis_halleri | g19250.t1 | 25.1418 | 15.3119 | prunus_avium | Pav_sc0000540.1_g200.1.mk:CDS:1 | 22.3906 | 13.6364 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.7051 | 55.3875 | oryza_sativa | Os05t0108000-01 | 69.0574 | 60.041 |
g19250 | arabidopsis_halleri | g19250.t1 | 76.1815 | 67.4858 | pistacia_vera | cds-EVM0017947.1 | 74.0809 | 65.625 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.2911 | 64.8393 | quercus_suber | cds-POF10482.1 | 79.716 | 69.574 |
g19250 | arabidopsis_halleri | g19250.t1 | 24.9527 | 16.0681 | galdieria_sulphuraria | EME29282 | 48 | 30.9091 |
g19250 | arabidopsis_halleri | g19250.t1 | 71.0775 | 60.8696 | chenopodium_quinoa | AUR62041944-RA:cds | 71.2121 | 60.9848 |
g19250 | arabidopsis_halleri | g19250.t1 | 68.8091 | 58.2231 | dioscorea_rotundata | DRNTG_14046.1 | 73.5354 | 62.2222 |
g19250 | arabidopsis_halleri | g19250.t1 | 77.5047 | 66.7297 | citrus_clementina | ESR59871 | 77.6515 | 66.8561 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.8034 | 67.8639 | juglans_regia | cds.Jr10_03770_p1 | 74.122 | 66.3586 |
g19250 | arabidopsis_halleri | g19250.t1 | 30.2457 | 22.1172 | ostreococcus_lucimarinus | ABO97381 | 57.3477 | 41.9355 |
g19250 | arabidopsis_halleri | g19250.t1 | 23.2514 | 12.2873 | saccharomyces_cerevisiae | YNL292W | 30.5211 | 16.129 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.8582 | 65.4064 | actinidia_chinensis | PSR87547 | 73.1978 | 63.9556 |
g19250 | arabidopsis_halleri | g19250.t1 | 25.8979 | 15.69 | leersia_perrieri | LPERR07G20440.1 | 22.7575 | 13.7874 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.2722 | 53.8752 | aegilops_tauschii | AET1Gv20053700.5 | 66.9291 | 56.1024 |
g19250 | arabidopsis_halleri | g19250.t1 | 68.9981 | 58.6011 | musa_acuminata | Ma06_p08300.1 | 71.2891 | 60.5469 |
g19250 | arabidopsis_halleri | g19250.t1 | 48.2042 | 34.5936 | selaginella_moellendorffii | EFJ15755 | 57.047 | 40.9396 |
g19250 | arabidopsis_halleri | g19250.t1 | 47.6371 | 34.2155 | selaginella_moellendorffii | EFJ38165 | 56.3758 | 40.4922 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 56.1437 | panicum_hallii | PUZ63631 | 69.2308 | 60.1215 |
g19250 | arabidopsis_halleri | g19250.t1 | 85.6333 | 81.2854 | arabis_alpina | KFK25685 | 91.7004 | 87.0445 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.2911 | 65.0284 | quercus_lobata | QL02p073991:mrna | 80.5328 | 70.4918 |
g19250 | arabidopsis_halleri | g19250.t1 | 94.3289 | 89.603 | eutrema_salsugineum | ESQ41411 | 93.797 | 89.0977 |
g19250 | arabidopsis_halleri | g19250.t1 | 47.0699 | 39.6975 | kalanchoe_fedtschenkoi | Kaladp0042s0229.1.v1.1 | 78.5489 | 66.2461 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.0832 | 53.4972 | hordeum_vulgare | HORVU.MOREX.r3.1HG0003900.1 | 67.9359 | 56.7134 |
g19250 | arabidopsis_halleri | g19250.t1 | 63.8941 | 58.034 | rosa_chinensis | PRQ54053 | 84.9246 | 77.1357 |
g19250 | arabidopsis_halleri | g19250.t1 | 25.1418 | 15.879 | oryza_barthii | OBART07G23460.1 | 22.6576 | 14.3101 |
g19250 | arabidopsis_halleri | g19250.t1 | 48.5822 | 32.5142 | chara_braunii | GBG90023 | 45.4867 | 30.4425 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.2911 | 65.5955 | corymbia_citriodora | cds-KAF8028956.1 | 73.7336 | 65.1032 |
g19250 | arabidopsis_halleri | g19250.t1 | 89.225 | 84.6881 | brassica_rapa_ro18 | A10p030960.1_BraROA.1 | 90.4215 | 85.8238 |
g19250 | arabidopsis_halleri | g19250.t1 | 72.0227 | 61.2476 | olea_europaea | OE9A023662C1 | 72.0227 | 61.2476 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.9735 | 55.9546 | olea_europaea | OE9A023025C1 | 67.2447 | 57.0328 |
g19250 | arabidopsis_halleri | g19250.t1 | 74.1021 | 64.4613 | eucalyptus_grandis | KCW52952 | 75.0958 | 65.3257 |
g19250 | arabidopsis_halleri | g19250.t1 | 26.8431 | 17.2023 | cyanidioschyzon_merolae | CMF022CT | 38.6921 | 24.7956 |
g19250 | arabidopsis_halleri | g19250.t1 | 95.0851 | 91.6824 | camelina_sativa | Csa20g021000.1 | 92.6335 | 89.3186 |
g19250 | arabidopsis_halleri | g19250.t1 | 94.896 | 92.4386 | camelina_sativa | Csa13g017280.1 | 92.1101 | 89.7248 |
g19250 | arabidopsis_halleri | g19250.t1 | 95.4631 | 93.3837 | camelina_sativa | Csa08g006490.1 | 93.1734 | 91.1439 |
g19250 | arabidopsis_halleri | g19250.t1 | 73.1569 | 62.7599 | daucus_carota | KZN02507 | 72.4719 | 62.1723 |
g19250 | arabidopsis_halleri | g19250.t1 | 54.6314 | 46.3138 | digitaria_exilis | Dexi3A01G0008290.1:cds | 64.9438 | 55.0562 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.2174 | 56.3327 | eragrostis_tef | Et_9B_065275.CDS | 71.281 | 61.5702 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.0284 | 56.1437 | eragrostis_tef | Et_9A_062742.CDS | 58.8034 | 50.7692 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.4613 | 54.0643 | triticum_dicoccoides | TRIDC1BG003380.2 | 67.126 | 56.2992 |
g19250 | arabidopsis_halleri | g19250.t1 | 18.5255 | 15.5009 | triticum_dicoccoides | TRIDC2BG085220.3 | 49.7462 | 41.6244 |
g19250 | arabidopsis_halleri | g19250.t1 | 23.4405 | 19.2817 | triticum_dicoccoides | TRIDC3BG080760.2 | 52.3207 | 43.038 |
g19250 | arabidopsis_halleri | g19250.t1 | 25.8979 | 16.0681 | triticum_dicoccoides | TRIDC2AG019100.1 | 23.5395 | 14.6048 |
g19250 | arabidopsis_halleri | g19250.t1 | 98.2987 | 97.7316 | arabidopsis_lyrata | fgenesh2_kg.6__1422__AT5G14460.1 | 96.6543 | 96.0967 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.6503 | 55.1985 | saccharum_spontaneum | Sspon.07G0027710-3D-mRNA-1:cds | 69.9387 | 59.7137 |
g19250 | arabidopsis_halleri | g19250.t1 | 65.0284 | 55.1985 | saccharum_spontaneum | Sspon.07G0027710-2C-mRNA-1:cds | 69.0763 | 58.6345 |
g19250 | arabidopsis_halleri | g19250.t1 | 54.4423 | 46.5028 | saccharum_spontaneum | Sspon.07G0027710-1P-mRNA-1:cds | 59.3814 | 50.7216 |
g19250 | arabidopsis_halleri | g19250.t1 | 69.3762 | 57.845 | nymphaea_colorata | NC3G0207200.1:cds | 73.5471 | 61.3226 |
g19250 | arabidopsis_halleri | g19250.t1 | 55.5766 | 47.8261 | echinochloa_crusgalli | scaffold40.602.cds | 67.4312 | 58.0275 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.8393 | 56.1437 | echinochloa_crusgalli | scaffold460.3.cds | 70.2869 | 60.8607 |
g19250 | arabidopsis_halleri | g19250.t1 | 64.8393 | 56.5217 | echinochloa_crusgalli | scaffold13.56.cds | 69.4332 | 60.5263 |
g19250 | arabidopsis_halleri | g19250.t1 | 57.4669 | 50.4726 | echinochloa_crusgalli | scaffold106.438.cds | 68.1614 | 59.8655 |
g19250 | arabidopsis_halleri | g19250.t1 | 87.9017 | 83.9319 | brassica_oleracea | Bo9g165910.1 | 84.392 | 80.5808 |
g19250 | arabidopsis_halleri | g19250.t1 | 75.4253 | 66.3516 | corchorus_capsularis | OMO59323 | 78.8538 | 69.3676 |
g19250 | arabidopsis_halleri | g19250.t1 | 62.0038 | 50.8507 | cynara_cardunculus | KVH92871 | 67.3511 | 55.2361 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |