Description

Ensembl ID g14248 Gene ID Accession -
Symbol Alias - Full Name RPB35.5A
Status Confidence Length 2088 bases Strand Plus strand
Position FJVB01000040.1 : 612150 - 614237 RNA binding domain RNA_pol_A_bac , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g14248 RNA_pol_A_bac PF01000 9.6e-35 1
g14248 RNA_pol_L PF01193 2.8e-21 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g14248.t1 1296 319aa g14248.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14248arabidopsis_hallerig14247.t190.425585.1064arabidopsis_hallerig14248.t153.291550.1567
g14248arabidopsis_hallerig14245.t195.94190.0369arabidopsis_hallerig14248.t181.504776.489
g14248arabidopsis_hallerig25464.t224.044614.3312arabidopsis_hallerig14248.t147.335428.2132
g14248arabidopsis_hallerig25438.t138.441621.8182arabidopsis_hallerig14248.t146.39526.3323
g14248arabidopsis_hallerig17744.t140.816316.3265arabidopsis_hallerig14248.t112.53925.01567

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14248arabidopsis_hallerig14248.t145.454529.7806chondrus_crispusCDF3570938.770125.4011
g14248arabidopsis_hallerig14248.t121.003115.047chondrus_crispusCDF3395143.506531.1688
g14248arabidopsis_hallerig14248.t120.689714.7335chondrus_crispusCDF3778442.857130.5195
g14248arabidopsis_hallerig14248.t159.561145.1411chlamydomonas_reinhardtiiPNW7703951.075338.7097
g14248arabidopsis_hallerig14248.t190.595681.1912papaver_somniferumRZC4512890.031280.6854
g14248arabidopsis_hallerig14248.t189.028279.9373papaver_somniferumRZC7004583.040974.5614
g14248arabidopsis_hallerig14248.t188.401378.6834papaver_somniferumRZC7463287.306577.709
g14248arabidopsis_hallerig14248.t190.595680.5643papaver_somniferumRZC6693690.031280.0623
g14248arabidopsis_hallerig14248.t174.294762.6959cannabis_sativa_femalecds.evm.model.01.28089.772775.7576
g14248arabidopsis_hallerig14248.t188.087875.5486physcomitrium_patensPp3c14_9440V3.286.728474.3827
g14248arabidopsis_hallerig14248.t168.025155.7994ficus_caricaFCD_00009611-RA:cds71.147558.3607
g14248arabidopsis_hallerig14248.t192.7983.6991citrullus_lanatusCla97C11G215950.192.583.4375
g14248arabidopsis_hallerig14248.t192.16382.7586cucumis_sativusKGN6134391.87582.5
g14248arabidopsis_hallerig14248.t194.357485.8934theobroma_cacaoEOX9833394.654186.1635
g14248arabidopsis_hallerig14248.t198.746197.8056arabidopsis_thalianaAT2G15430.198.746197.8056
g14248arabidopsis_hallerig14248.t192.476582.7586cucumis_meloMELO3C008589.2.192.187582.5
g14248arabidopsis_hallerig14248.t191.849584.326populus_trichocarpaPotri.009G097600.2.v4.190.712183.2817
g14248arabidopsis_hallerig14248.t197.492295.2978brassica_junceacds.BjuB03g06850S97.187595
g14248arabidopsis_hallerig14248.t193.730490.9091brassica_junceacds.BjuB04g31490S82.825580.3324
g14248arabidopsis_hallerig14248.t181.818278.6834brassica_napusCDX7121992.553289.0071
g14248arabidopsis_hallerig14248.t187.460881.8182brassica_napusCDX7122062.837858.7838
g14248arabidopsis_hallerig14248.t197.178794.6708brassica_napusCDY3663197.178794.6708
g14248arabidopsis_hallerig14248.t195.924894.0439brassica_napusCDY6231296.226494.3396
g14248arabidopsis_hallerig14248.t195.611393.1034brassica_napusCDY3722795.015692.5234
g14248arabidopsis_hallerig14248.t192.16381.8182malus_domestica_goldenmRNA:MD10G007930092.452882.0755
g14248arabidopsis_hallerig14248.t191.849580.8777malus_domestica_goldenmRNA:MD05G007250092.138481.1321
g14248arabidopsis_hallerig14248.t185.893473.6677marchantia_polymorphaPTQ4289284.567972.5309
g14248arabidopsis_hallerig14248.t181.191270.8464prunus_dulcisVVA1825186.046575.0831
g14248arabidopsis_hallerig14248.t191.849582.1317prunus_dulcisVVA1824492.138482.3899
g14248arabidopsis_hallerig14248.t177.11666.1442prunus_persicaONH9171484.827672.7586
g14248arabidopsis_hallerig14248.t191.849581.8182prunus_persicaONH9171092.138482.0755
g14248arabidopsis_hallerig14248.t192.476581.5047cajanus_cajanC.cajan_13934.t79.729770.2703
g14248arabidopsis_hallerig14248.t193.103483.6991glycine_maxKRG8936592.812583.4375
g14248arabidopsis_hallerig14248.t193.103483.6991glycine_maxKRH5041293.103483.6991
g14248arabidopsis_hallerig14248.t192.476582.1317lupinus_angustifoliusOIW1022291.900381.6199
g14248arabidopsis_hallerig14248.t191.222682.1317lupinus_angustifoliusOIV9421090.654281.6199
g14248arabidopsis_hallerig14248.t192.16381.5047medicago_truncatulaAES9009292.452881.761
g14248arabidopsis_hallerig14248.t193.730481.5047phaseolus_vulgarisESW2976594.025281.761
g14248arabidopsis_hallerig14248.t192.476581.8182pisum_sativumPsat7g129720.1.cds92.187581.5625
g14248arabidopsis_hallerig14248.t193.416982.1317vigna_radiataVradi07g04680.193.710782.3899
g14248arabidopsis_hallerig14248.t193.416981.8182vigna_unguiculataVigun03g196000.1.v1.293.710782.0755
g14248arabidopsis_hallerig14248.t193.416982.1317vigna_angularisKOM3180693.710782.3899
g14248arabidopsis_hallerig14248.t193.416984.326manihot_esculentaOAY2231693.710784.5912
g14248arabidopsis_hallerig14248.t170.219462.3824manihot_esculentaOAY4561684.848575.3788
g14248arabidopsis_hallerig14248.t140.125429.1536capsicum_annuumPHT6645563.366346.0396
g14248arabidopsis_hallerig14248.t129.467125.0784capsicum_annuumPHT8823191.262177.6699
g14248arabidopsis_hallerig14248.t130.09425.0784capsicum_annuumPHT7340883.478369.5652
g14248arabidopsis_hallerig14248.t132.915428.5266capsicum_annuumPHT9369184.677473.3871
g14248arabidopsis_hallerig14248.t192.16381.1912capsicum_annuumPHT6743393.03881.962
g14248arabidopsis_hallerig14248.t193.730481.1912solanum_lycopersicumSolyc05g010300.3.182.596771.547
g14248arabidopsis_hallerig14248.t190.595679.9373sesamum_indicumSIN_1026188.t90.595679.9373
g14248arabidopsis_hallerig14248.t193.103484.0125helianthus_annuusmRNA:HanXRQr2_Chr16g077560192.812583.75
g14248arabidopsis_hallerig14248.t192.476583.6991helianthus_annuusmRNA:HanXRQr2_Chr03g010641192.187583.4375
g14248arabidopsis_hallerig14248.t193.730484.0125lactuca_sativacds-PLY92309.193.437583.75
g14248arabidopsis_hallerig14248.t142.006336.6771lolium_perennecds.KYUSt_chr5.1761872.432463.2432
g14248arabidopsis_hallerig14248.t145.76839.4984lolium_perennecds.KYUSt_chr5.1761990.123577.7778
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001593.173.854463.6119
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001598.172.105362.1053
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002035.171.91661.9423
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_sangAVESA.00010b.r2.5DG0973610.1.CDS83.030371.5152
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_sangAVESA.00010b.r2.5CG0899000.1.CDS83.030371.5152
g14248arabidopsis_hallerig14248.t185.893473.9812avena_sativa_sangAVESA.00010b.r2.5AG0836000.1.CDS83.030371.5152
g14248arabidopsis_hallerig14248.t155.799448.9028oryza_longistaminataKN541812.1_FGP00183.177672.8972
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_rufipogonORUFI09G00530.184.242472.4242
g14248arabidopsis_hallerig14248.t186.520475.2351oryza_brachyanthaOB09G10310.168.827959.8504
g14248arabidopsis_hallerig14248.t185.579973.3542oryza_punctataOPUNC09G00330.18472
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_glaberrimaORGLA09G0004200.183.483571.7718
g14248arabidopsis_hallerig14248.t186.833973.6677secale_cerealeSECCE5Rv1G0320950.183.685870.997
g14248arabidopsis_hallerig14248.t183.072172.1003secale_cerealeSECCE6Rv1G0444680.183.596272.5552
g14248arabidopsis_hallerig14248.t184.32673.0407setaria_viridisTKW3211182.769271.6923
g14248arabidopsis_hallerig14248.t184.95373.6677sorghum_bicolorEER9857682.621971.6463
g14248arabidopsis_hallerig14248.t160.188153.605setaria_italicaKQL2372483.478374.3478
g14248arabidopsis_hallerig14248.t186.833973.3542triticum_aestivumTraesCS5A02G160900.183.685870.6949
g14248arabidopsis_hallerig14248.t184.32672.1003triticum_aestivumTraesCS7B02G435800.185.396873.0159
g14248arabidopsis_hallerig14248.t186.520473.3542triticum_aestivumTraesCS5B02G158300.183.383770.6949
g14248arabidopsis_hallerig14248.t183.385670.8464triticum_aestivumTraesCS7D02G509400.184.444471.746
g14248arabidopsis_hallerig14248.t186.833973.3542triticum_aestivumTraesCS5D02G165800.276.308564.4628
g14248arabidopsis_hallerig14248.t184.32671.7868triticum_aestivumTraesCS7A02G519700.185.126672.4684
g14248arabidopsis_hallerig14248.t184.012573.3542zea_maysZm00001eb095630_P00280.239570.0599
g14248arabidopsis_hallerig14248.t188.401377.116ananas_comosusAco020532.1.mrna182.215771.7201
g14248arabidopsis_hallerig14248.t187.460878.0564asparagus_officinalisONK7031574.798966.756
g14248arabidopsis_hallerig14248.t184.32672.1003triticum_turgidumTRITD7Bv1G219430.380.780869.0691
g14248arabidopsis_hallerig14248.t186.833973.3542triticum_turgidumTRITD5Av1G119630.483.685870.6949
g14248arabidopsis_hallerig14248.t186.520473.3542triticum_turgidumTRITD5Bv1G099090.883.383770.6949
g14248arabidopsis_hallerig14248.t184.32671.7868triticum_turgidumTRITD7Av1G267650.281.515269.3939
g14248arabidopsis_hallerig14248.t152.664636.9906caenorhabditis_elegansC36B1.3.159.574541.844
g14248arabidopsis_hallerig14248.t152.664637.3041drosophila_melanogasterFBpp008012161.090943.2727
g14248arabidopsis_hallerig14248.t191.222679.6238amborella_trichopodaERN1463789.814878.3951
g14248arabidopsis_hallerig14248.t170.219461.442corylus_avellanaCav04g02170.t179.151969.2579
g14248arabidopsis_hallerig14248.t194.043984.6395gossypium_raimondiiKJB7765694.339684.9057
g14248arabidopsis_hallerig14248.t194.357484.953gossypium_raimondiiKJB4737694.654185.2201
g14248arabidopsis_hallerig14248.t183.385672.7273brachypodium_distachyonKQJ8690280.606170.303
g14248arabidopsis_hallerig14248.t154.858937.3041homo_sapiensENSP0000021925263.636443.2727
g14248arabidopsis_hallerig14248.t190.282180.8777fraxinus_excelsiorFRAEX38873_v2_000203620.1.cds90.282180.8777
g14248arabidopsis_hallerig14248.t190.909180.5643fraxinus_excelsiorFRAEX38873_v2_000249470.1.cds90.909180.5643
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_glumipatulaOGLUM09G00800.180.115368.8761
g14248arabidopsis_hallerig14248.t147.335439.4984eragrostis_curvulaTVU1077578.645865.625
g14248arabidopsis_hallerig14248.t184.95374.6081eragrostis_curvulaTVU1077474.246665.2055
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_indicaBGIOSGA030281-PA84.242472.4242
g14248arabidopsis_hallerig14248.t193.103483.6991vitis_viniferaVitvi03g00543_P00293.396283.9623
g14248arabidopsis_hallerig14248.t192.16382.1317nicotiana_attenuataOIT2425192.452882.3899
g14248arabidopsis_hallerig14248.t191.222679.6238coffea_canephoraCDO9720991.222679.6238
g14248arabidopsis_hallerig14248.t192.16384.326ipomoea_trilobaitb14g02950.t192.16384.326
g14248arabidopsis_hallerig14248.t184.32671.7868triticum_urartuTuG1812G0700005602.01.T0185.126672.4684
g14248arabidopsis_hallerig14248.t186.833973.3542triticum_urartuTuG1812G0500001880.01.T0183.685870.6949
g14248arabidopsis_hallerig14248.t183.385672.7273oryza_meridionalisOMERI09G00390.187.213176.0656
g14248arabidopsis_hallerig14248.t144.514137.931prunus_aviumPav_sc0000136.1_g080.1.mk:mrna87.116674.2331
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_sativaOs09t0110400-0284.242472.4242
g14248arabidopsis_hallerig14248.t182.445170.8464pistacia_veracds-EVM0011777.188.552276.0943
g14248arabidopsis_hallerig14248.t177.74369.279pistacia_veracds-EVM0028068.189.530779.7834
g14248arabidopsis_hallerig14248.t142.319728.8401quercus_subercds-POE83334.140.909127.8788
g14248arabidopsis_hallerig14248.t142.319729.4671quercus_subercds-POE46918.132.219622.4344
g14248arabidopsis_hallerig14248.t149.216333.2288galdieria_sulphurariaEME2839861.089541.2451
g14248arabidopsis_hallerig14248.t153.60536.0502ciona_savignyiENSCSAVP0000000365761.732941.5162
g14248arabidopsis_hallerig14248.t193.103479.9373chenopodium_quinoaAUR62026162-RA:cds93.396280.1887
g14248arabidopsis_hallerig14248.t193.103479.6238chenopodium_quinoaAUR62013252-RA:cds93.396279.8742
g14248arabidopsis_hallerig14248.t186.833974.9216dioscorea_rotundataDRNTG_33997.187.106975.1572
g14248arabidopsis_hallerig14248.t192.7984.326citrus_clementinaESR3619592.7984.326
g14248arabidopsis_hallerig14248.t165.830759.2477juglans_regiacds.Jr16_21960_p190.128881.1159
g14248arabidopsis_hallerig14248.t159.247744.5141ostreococcus_lucimarinusABO9450059.43444.6541
g14248arabidopsis_hallerig14248.t149.843334.4828saccharomyces_cerevisiaeYIL021W5034.5912
g14248arabidopsis_hallerig14248.t194.670885.2665actinidia_chinensisPSS1921194.670885.2665
g14248arabidopsis_hallerig14248.t194.670885.5799actinidia_chinensisPSS2611894.670885.5799
g14248arabidopsis_hallerig14248.t187.147374.2947leersia_perrieriLPERR09G00790.180.81468.8953
g14248arabidopsis_hallerig14248.t186.833973.3542aegilops_tauschiiAET5Gv20405800.176.519364.6409
g14248arabidopsis_hallerig14248.t183.385670.8464aegilops_tauschiiAET7Gv21269900.380.606168.4848
g14248arabidopsis_hallerig14248.t187.147376.8025musa_acuminataMa01_p19980.184.242474.2424
g14248arabidopsis_hallerig14248.t133.855829.1536musa_acuminataMa03_p12770.177.142966.4286
g14248arabidopsis_hallerig14248.t187.147371.7868selaginella_moellendorffiiEFJ3815386.87571.5625
g14248arabidopsis_hallerig14248.t187.147372.1003selaginella_moellendorffiiEFJ1576686.87571.875
g14248arabidopsis_hallerig14248.t186.520475.2351panicum_halliiPUZ6979784.403773.3945
g14248arabidopsis_hallerig14248.t198.119195.9248arabis_alpinaKFK4001897.812595.625
g14248arabidopsis_hallerig14248.t191.849583.6991quercus_lobataQL11p034241:mrna92.42984.2271
g14248arabidopsis_hallerig14248.t198.119194.0439eutrema_salsugineumESQ5101084.823881.3008
g14248arabidopsis_hallerig14248.t197.492294.3574eutrema_salsugineumESQ3040697.187594.0625
g14248arabidopsis_hallerig14248.t191.53680.5643kalanchoe_fedtschenkoiKaladp0047s0046.1.v1.191.823980.8176
g14248arabidopsis_hallerig14248.t184.32672.7273hordeum_vulgareHORVU.MOREX.r3.7HG0745350.181.762970.5167
g14248arabidopsis_hallerig14248.t185.893472.4138hordeum_vulgareHORVU.MOREX.r3.5HG0467880.182.779569.7885
g14248arabidopsis_hallerig14248.t192.476580.8777rosa_chinensisPRQ2293592.767381.1321
g14248arabidopsis_hallerig14248.t126.645821.3166rosa_chinensisPRQ3399570.247956.1983
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_barthiiOBART09G00500.180.115368.8761
g14248arabidopsis_hallerig14248.t179.310366.1442chara_brauniiGBG8953880.830767.4121
g14248arabidopsis_hallerig14248.t193.103483.0721corymbia_citriodoracds-KAF8020179.192.812582.8125
g14248arabidopsis_hallerig14248.t193.103490.5956brassica_rapa_ro18A09p011870.1_BraROA.196.116593.5275
g14248arabidopsis_hallerig14248.t197.178794.6708brassica_rapa_ro18A07p007240.1_BraROA.197.178794.6708
g14248arabidopsis_hallerig14248.t190.909180.8777olea_europaeaOE9A088721C190.909180.8777
g14248arabidopsis_hallerig14248.t190.282180.8777olea_europaeaOE9A062734C190.282180.8777
g14248arabidopsis_hallerig14248.t190.909181.1912olea_europaeaOE9A056794C190.909181.1912
g14248arabidopsis_hallerig14248.t190.282180.8777olea_europaeaOE9A102444C190.282180.8777
g14248arabidopsis_hallerig14248.t192.476583.6991eucalyptus_grandisKCW6372291.900383.1776
g14248arabidopsis_hallerig14248.t160.501640.4389cyanidioschyzon_merolaeCMP043CT36.210124.2026
g14248arabidopsis_hallerig14248.t199.37396.5517camelina_sativaCsa01g035970.197.239394.4785
g14248arabidopsis_hallerig14248.t198.746196.5517camelina_sativaCsa19g046520.198.746196.5517
g14248arabidopsis_hallerig14248.t199.059696.2382camelina_sativaCsa15g071420.196.932594.1718
g14248arabidopsis_hallerig14248.t191.222682.4451daucus_carotaKZM9063791.222682.4451
g14248arabidopsis_hallerig14248.t186.833975.5486daucus_carotaKZN0366586.292875.0779
g14248arabidopsis_hallerig14248.t185.893476.1756digitaria_exilisDexi2A01G0013020.1:cds77.183168.4507
g14248arabidopsis_hallerig14248.t186.206976.1756digitaria_exilisDexiUA01G0007280.1:cds81.845272.3214
g14248arabidopsis_hallerig14248.t186.206976.1756digitaria_exilisDexiUA01G0007320.1:cds81.845272.3214
g14248arabidopsis_hallerig14248.t186.206976.1756digitaria_exilisDexi2B01G0012160.1:cds81.845272.3214
g14248arabidopsis_hallerig14248.t185.266574.9216eragrostis_tefEt_2B_019744.CDS80.712270.9199
g14248arabidopsis_hallerig14248.t185.266574.6081eragrostis_tefEt_2A_018162.CDS80.712270.6231
g14248arabidopsis_hallerig14248.t186.833973.3542triticum_dicoccoidesTRIDC5AG026600.174.663163.0728
g14248arabidopsis_hallerig14248.t186.833973.6677triticum_dicoccoidesTRIDC5BG027820.183.685870.997
g14248arabidopsis_hallerig14248.t158.307247.3354triticum_dicoccoidesTRIDC7AG072900.258.307247.3354
g14248arabidopsis_hallerig14248.t1100100arabidopsis_lyratafgenesh2_kg.3__3110__AT2G15430.1100100
g14248arabidopsis_hallerig14248.t183.072172.1003saccharum_spontaneumSspon.02G0018120-2B-mRNA-1:cds82.043371.2074
g14248arabidopsis_hallerig14248.t189.655278.6834nymphaea_colorataNC9G0168970.1:cds88.544977.709
g14248arabidopsis_hallerig14248.t185.579975.8621echinochloa_crusgalliscaffold377.22.cds80.058770.9677
g14248arabidopsis_hallerig14248.t146.39540.1254echinochloa_crusgalliscaffold3.211.cds88.095276.1905
g14248arabidopsis_hallerig14248.t182.131772.1003echinochloa_crusgalliscaffold201.12.cds88.513577.7027
g14248arabidopsis_hallerig14248.t197.178794.6708brassica_oleraceaBo7g021630.197.178794.6708
g14248arabidopsis_hallerig14248.t195.924893.7304brassica_oleraceaBo9g023820.196.226494.0252
g14248arabidopsis_hallerig14248.t190.595679.6238corchorus_capsularisOMO7402492.038280.8917
g14248arabidopsis_hallerig14248.t187.147374.9216oryza_nivaraONIVA09G00530.184.242472.4242
g14248arabidopsis_hallerig14248.t167.398158.6207trifolium_pratenseTp57577_TGAC_v2_mRNA1364489.958278.2427
g14248arabidopsis_hallerig14248.t189.028279.6238cynara_cardunculusKVI0190493.421183.5526

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression