Description

Ensembl ID g14247 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 903 bases Strand Plus strand
Position FJVB01000040.1 : 608060 - 608962 RNA binding domain RNA_pol_A_bac , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g14247 RNA_pol_A_bac PF01000 1.1e-08 1
g14247 RNA_pol_L PF01193 5.2e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g14247.t1 659 188aa g14247.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14247arabidopsis_hallerig14245.t159.040659.0406arabidopsis_hallerig14247.t185.106485.1064
g14247arabidopsis_hallerig14248.t153.291550.1567arabidopsis_hallerig14247.t190.425585.1064
g14247arabidopsis_hallerig25464.t212.26117.96178arabidopsis_hallerig14247.t140.957426.5957
g14247arabidopsis_hallerig25438.t119.480511.4286arabidopsis_hallerig14247.t139.893623.4043
g14247arabidopsis_hallerig17744.t127.55112.2449arabidopsis_hallerig14247.t114.36176.38298

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14247arabidopsis_hallerig14247.t142.553229.2553chondrus_crispusCDF3570921.390414.7059
g14247arabidopsis_hallerig14247.t135.638325.5319chondrus_crispusCDF3395143.506531.1688
g14247arabidopsis_hallerig14247.t135.106425chondrus_crispusCDF3778442.857130.5195
g14247arabidopsis_hallerig14247.t154.787239.8936chlamydomonas_reinhardtiiPNW7703927.688220.1613
g14247arabidopsis_hallerig14247.t184.574574.4681papaver_somniferumRZC4512849.532743.6137
g14247arabidopsis_hallerig14247.t184.574573.9362papaver_somniferumRZC7004546.491240.6433
g14247arabidopsis_hallerig14247.t184.042672.8723papaver_somniferumRZC7463248.916442.4149
g14247arabidopsis_hallerig14247.t184.574573.9362papaver_somniferumRZC6693649.532743.3022
g14247arabidopsis_hallerig14247.t181.914968.617cannabis_sativa_femalecds.evm.model.01.28058.333348.8636
g14247arabidopsis_hallerig14247.t182.978771.8085physcomitrium_patensPp3c14_9440V3.248.148141.6667
g14247arabidopsis_hallerig14247.t163.297953.1915ficus_caricaFCD_00009611-RA:cds39.016432.7869
g14247arabidopsis_hallerig14247.t185.106473.9362citrullus_lanatusCla97C11G215950.15043.4375
g14247arabidopsis_hallerig14247.t184.042672.8723cucumis_sativusKGN6134349.37542.8125
g14247arabidopsis_hallerig14247.t186.170275.5319theobroma_cacaoEOX9833350.943444.6541
g14247arabidopsis_hallerig14247.t187.76683.5106arabidopsis_thalianaAT2G15400.151.724149.2163
g14247arabidopsis_hallerig14247.t184.574572.8723cucumis_meloMELO3C008589.2.149.687542.8125
g14247arabidopsis_hallerig14247.t185.106476.0638populus_trichocarpaPotri.009G097600.2.v4.149.535644.2724
g14247arabidopsis_hallerig14247.t187.23482.4468brassica_junceacds.BjuB03g06850S51.2548.4375
g14247arabidopsis_hallerig14247.t185.638381.383brassica_junceacds.BjuB04g31490S44.598342.3823
g14247arabidopsis_hallerig14247.t161.702157.4468brassica_napusCDX7121941.134838.2979
g14247arabidopsis_hallerig14247.t171.276662.766brassica_napusCDX7122030.180226.5766
g14247arabidopsis_hallerig14247.t187.23482.4468brassica_napusCDY3663151.410748.5893
g14247arabidopsis_hallerig14247.t187.23482.9787brassica_napusCDY6231251.572349.0566
g14247arabidopsis_hallerig14247.t186.170281.383brassica_napusCDY3722750.467347.6636
g14247arabidopsis_hallerig14247.t184.574572.8723malus_domestica_goldenmRNA:MD10G00793005043.0818
g14247arabidopsis_hallerig14247.t184.042671.8085malus_domestica_goldenmRNA:MD05G007250049.685542.4528
g14247arabidopsis_hallerig14247.t180.319166.4894marchantia_polymorphaPTQ4289246.604938.5802
g14247arabidopsis_hallerig14247.t169.680959.5745prunus_dulcisVVA1825143.521637.2093
g14247arabidopsis_hallerig14247.t184.042673.4043prunus_dulcisVVA1824449.685543.3962
g14247arabidopsis_hallerig14247.t169.148958.5106prunus_persicaONH9171444.827637.931
g14247arabidopsis_hallerig14247.t184.042672.8723prunus_persicaONH9171049.685543.0818
g14247arabidopsis_hallerig14247.t189.361775cajanus_cajanC.cajan_13934.t45.405438.1081
g14247arabidopsis_hallerig14247.t185.106473.9362glycine_maxKRG893655043.4375
g14247arabidopsis_hallerig14247.t185.106473.9362glycine_maxKRH5041250.156743.5737
g14247arabidopsis_hallerig14247.t185.638372.3404lupinus_angustifoliusOIW1022250.155842.3676
g14247arabidopsis_hallerig14247.t184.042672.3404lupinus_angustifoliusOIV9421049.221242.3676
g14247arabidopsis_hallerig14247.t185.638372.8723medicago_truncatulaAES9009250.628943.0818
g14247arabidopsis_hallerig14247.t185.638371.8085phaseolus_vulgarisESW2976550.628942.4528
g14247arabidopsis_hallerig14247.t185.106471.8085pisum_sativumPsat7g129720.1.cds5042.1875
g14247arabidopsis_hallerig14247.t185.106472.3404vigna_radiataVradi07g04680.150.314542.7673
g14247arabidopsis_hallerig14247.t185.106472.3404vigna_unguiculataVigun03g196000.1.v1.250.314542.7673
g14247arabidopsis_hallerig14247.t185.106472.3404vigna_angularisKOM3180650.314542.7673
g14247arabidopsis_hallerig14247.t185.638375manihot_esculentaOAY2231650.628944.3396
g14247arabidopsis_hallerig14247.t145.744738.8298manihot_esculentaOAY4561632.575827.6515
g14247arabidopsis_hallerig14247.t120.744711.1702capsicum_annuumPHT6645519.306910.396
g14247arabidopsis_hallerig14247.t11.595741.59574capsicum_annuumPHT882312.912622.91262
g14247arabidopsis_hallerig14247.t11.595741.59574capsicum_annuumPHT734082.60872.6087
g14247arabidopsis_hallerig14247.t13.72342.65957capsicum_annuumPHT936915.645164.03226
g14247arabidopsis_hallerig14247.t186.170273.9362capsicum_annuumPHT6743351.265843.9873
g14247arabidopsis_hallerig14247.t188.829876.0638solanum_lycopersicumSolyc05g010300.3.146.132639.5028
g14247arabidopsis_hallerig14247.t181.914970.7447sesamum_indicumSIN_1026188.t48.275941.6928
g14247arabidopsis_hallerig14247.t185.638373.4043helianthus_annuusmRNA:HanXRQr2_Chr16g077560150.312543.125
g14247arabidopsis_hallerig14247.t185.638373.4043helianthus_annuusmRNA:HanXRQr2_Chr03g010641150.312543.125
g14247arabidopsis_hallerig14247.t186.702174.4681lactuca_sativacds-PLY92309.150.937543.75
g14247arabidopsis_hallerig14247.t17.978724.25532lolium_perennecds.KYUSt_chr5.176188.108114.32432
g14247arabidopsis_hallerig14247.t17564.3617lolium_perennecds.KYUSt_chr5.1761987.03774.6914
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001593.139.622632.8841
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001598.138.684232.1053
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002035.138.582732.021
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_sangAVESA.00010b.r2.5DG0973610.1.CDS44.545536.9697
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_sangAVESA.00010b.r2.5CG0899000.1.CDS44.545536.9697
g14247arabidopsis_hallerig14247.t178.191564.8936avena_sativa_sangAVESA.00010b.r2.5AG0836000.1.CDS44.545536.9697
g14247arabidopsis_hallerig14247.t142.553235.6383oryza_longistaminataKN541812.1_FGP00137.383231.3084
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_rufipogonORUFI09G00530.145.151536.9697
g14247arabidopsis_hallerig14247.t178.191564.3617oryza_brachyanthaOB09G10310.136.658430.1746
g14247arabidopsis_hallerig14247.t177.127762.234oryza_punctataOPUNC09G00330.144.615436
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_glaberrimaORGLA09G0004200.144.744736.6366
g14247arabidopsis_hallerig14247.t178.723465.4255secale_cerealeSECCE5Rv1G0320950.144.71337.1601
g14247arabidopsis_hallerig14247.t178.191566.4894secale_cerealeSECCE6Rv1G0444680.146.372239.4322
g14247arabidopsis_hallerig14247.t17561.7021setaria_viridisTKW3211143.384635.6923
g14247arabidopsis_hallerig14247.t176.595762.766sorghum_bicolorEER9857643.902435.9756
g14247arabidopsis_hallerig14247.t135.106429.7872setaria_italicaKQL2372428.695724.3478
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_aestivumTraesCS5A02G160900.144.71337.1601
g14247arabidopsis_hallerig14247.t178.191566.4894triticum_aestivumTraesCS7B02G435800.146.666739.6825
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_aestivumTraesCS5B02G158300.144.71337.1601
g14247arabidopsis_hallerig14247.t176.595764.3617triticum_aestivumTraesCS7D02G509400.145.714338.4127
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_aestivumTraesCS5D02G165800.240.771433.8843
g14247arabidopsis_hallerig14247.t178.191565.9574triticum_aestivumTraesCS7A02G519700.146.51939.2405
g14247arabidopsis_hallerig14247.t177.127763.2979zea_maysZm00001eb095630_P00243.413235.6287
g14247arabidopsis_hallerig14247.t180.319167.5532ananas_comosusAco020532.1.mrna144.023337.0262
g14247arabidopsis_hallerig14247.t179.255367.5532asparagus_officinalisONK7031539.946434.0483
g14247arabidopsis_hallerig14247.t178.191566.4894triticum_turgidumTRITD7Bv1G219430.344.144137.5375
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_turgidumTRITD5Av1G119630.444.71337.1601
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_turgidumTRITD5Bv1G099090.844.71337.1601
g14247arabidopsis_hallerig14247.t178.191565.9574triticum_turgidumTRITD7Av1G267650.244.545537.5758
g14247arabidopsis_hallerig14247.t142.553228.1915caenorhabditis_elegansC36B1.3.128.368818.7943
g14247arabidopsis_hallerig14247.t139.361725.5319drosophila_melanogasterFBpp008012126.909117.4545
g14247arabidopsis_hallerig14247.t184.574570.7447amborella_trichopodaERN1463749.074141.0494
g14247arabidopsis_hallerig14247.t149.468139.8936corylus_avellanaCav04g02170.t132.862226.5018
g14247arabidopsis_hallerig14247.t185.638375gossypium_raimondiiKJB7765650.628944.3396
g14247arabidopsis_hallerig14247.t186.702175.5319gossypium_raimondiiKJB4737651.257944.6541
g14247arabidopsis_hallerig14247.t176.063862.766brachypodium_distachyonKQJ8690243.333335.7576
g14247arabidopsis_hallerig14247.t142.553223.9362homo_sapiensENSP0000021925229.090916.3636
g14247arabidopsis_hallerig14247.t181.914970.7447fraxinus_excelsiorFRAEX38873_v2_000203620.1.cds48.275941.6928
g14247arabidopsis_hallerig14247.t182.446869.6809fraxinus_excelsiorFRAEX38873_v2_000249470.1.cds48.589341.0658
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_glumipatulaOGLUM09G00800.142.939535.1585
g14247arabidopsis_hallerig14247.t174.468161.1702eragrostis_curvulaTVU1077572.916759.8958
g14247arabidopsis_hallerig14247.t177.659663.2979eragrostis_curvulaTVU107744032.6027
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_indicaBGIOSGA030281-PA45.151536.9697
g14247arabidopsis_hallerig14247.t184.574573.4043vitis_viniferaVitvi03g00543_P0025043.3962
g14247arabidopsis_hallerig14247.t185.106474.4681nicotiana_attenuataOIT2425150.314544.0252
g14247arabidopsis_hallerig14247.t183.510669.6809coffea_canephoraCDO9720949.216341.0658
g14247arabidopsis_hallerig14247.t185.106475ipomoea_trilobaitb14g02950.t150.156744.2006
g14247arabidopsis_hallerig14247.t178.191565.9574triticum_urartuTuG1812G0700005602.01.T0146.51939.2405
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_urartuTuG1812G0500001880.01.T0144.71337.1601
g14247arabidopsis_hallerig14247.t177.659664.3617oryza_meridionalisOMERI09G00390.147.868939.6721
g14247arabidopsis_hallerig14247.t16.914894.78723prunus_aviumPav_sc0000136.1_g080.1.mk:mrna7.975465.52147
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_sativaOs09t0110400-0245.151536.9697
g14247arabidopsis_hallerig14247.t176.595763.2979pistacia_veracds-EVM0011777.148.484840.0673
g14247arabidopsis_hallerig14247.t184.042671.8085pistacia_veracds-EVM0028068.157.039748.7365
g14247arabidopsis_hallerig14247.t135.638322.3404quercus_subercds-POE83334.120.30312.7273
g14247arabidopsis_hallerig14247.t135.638322.8723quercus_subercds-POE46918.115.990510.2625
g14247arabidopsis_hallerig14247.t136.702121.2766galdieria_sulphurariaEME2839826.848215.5642
g14247arabidopsis_hallerig14247.t141.489426.0638ciona_savignyiENSCSAVP0000000365728.158817.6895
g14247arabidopsis_hallerig14247.t185.638372.3404chenopodium_quinoaAUR62026162-RA:cds50.628942.7673
g14247arabidopsis_hallerig14247.t185.638371.8085chenopodium_quinoaAUR62013252-RA:cds50.628942.4528
g14247arabidopsis_hallerig14247.t179.255365.4255dioscorea_rotundataDRNTG_33997.146.855338.6792
g14247arabidopsis_hallerig14247.t184.042672.8723citrus_clementinaESR3619549.529842.9467
g14247arabidopsis_hallerig14247.t140.957434.0426juglans_regiacds.Jr16_21960_p133.047227.4678
g14247arabidopsis_hallerig14247.t154.255340.4255ostreococcus_lucimarinusABO9450032.075523.8994
g14247arabidopsis_hallerig14247.t139.893623.9362saccharomyces_cerevisiaeYIL021W23.584914.1509
g14247arabidopsis_hallerig14247.t187.23474.4681actinidia_chinensisPSS1921151.410743.8871
g14247arabidopsis_hallerig14247.t187.23474.4681actinidia_chinensisPSS2611851.410743.8871
g14247arabidopsis_hallerig14247.t178.723463.8298leersia_perrieriLPERR09G00790.143.023334.8837
g14247arabidopsis_hallerig14247.t178.723465.4255aegilops_tauschiiAET5Gv20405800.140.88433.9779
g14247arabidopsis_hallerig14247.t176.595764.3617aegilops_tauschiiAET7Gv21269900.343.636436.6667
g14247arabidopsis_hallerig14247.t179.255367.0213musa_acuminataMa01_p19980.145.151538.1818
g14247arabidopsis_hallerig14247.t117.553214.3617musa_acuminataMa03_p12770.123.571419.2857
g14247arabidopsis_hallerig14247.t181.914964.8936selaginella_moellendorffiiEFJ3815348.12538.125
g14247arabidopsis_hallerig14247.t181.914965.4255selaginella_moellendorffiiEFJ1576648.12538.4375
g14247arabidopsis_hallerig14247.t178.191564.3617panicum_halliiPUZ6979744.954137.0031
g14247arabidopsis_hallerig14247.t188.829884.0426arabis_alpinaKFK4001852.187549.375
g14247arabidopsis_hallerig14247.t184.574573.9362quercus_lobataQL11p034241:mrna50.157743.8486
g14247arabidopsis_hallerig14247.t189.361782.4468eutrema_salsugineumESQ5101045.528542.0054
g14247arabidopsis_hallerig14247.t189.361782.9787eutrema_salsugineumESQ3040652.548.75
g14247arabidopsis_hallerig14247.t184.042671.8085kalanchoe_fedtschenkoiKaladp0047s0046.1.v1.149.685542.4528
g14247arabidopsis_hallerig14247.t177.127764.3617hordeum_vulgareHORVU.MOREX.r3.7HG0745350.144.072936.7781
g14247arabidopsis_hallerig14247.t177.659663.8298hordeum_vulgareHORVU.MOREX.r3.5HG0467880.144.108836.2538
g14247arabidopsis_hallerig14247.t185.106473.4043rosa_chinensisPRQ2293550.314543.3962
g14247arabidopsis_hallerig14247.t11.595741.06383rosa_chinensisPRQ339952.479341.65289
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_barthiiOBART09G00500.142.939535.1585
g14247arabidopsis_hallerig14247.t17559.5745chara_brauniiGBG8953845.047935.7827
g14247arabidopsis_hallerig14247.t186.170272.8723corymbia_citriodoracds-KAF8020179.150.62542.8125
g14247arabidopsis_hallerig14247.t187.23482.9787brassica_rapa_ro18A09p011870.1_BraROA.153.074450.4854
g14247arabidopsis_hallerig14247.t187.23482.4468brassica_rapa_ro18A07p007240.1_BraROA.151.410748.5893
g14247arabidopsis_hallerig14247.t182.978770.2128olea_europaeaOE9A088721C148.902841.3793
g14247arabidopsis_hallerig14247.t181.38370.2128olea_europaeaOE9A062734C147.962441.3793
g14247arabidopsis_hallerig14247.t182.978770.2128olea_europaeaOE9A056794C148.902841.3793
g14247arabidopsis_hallerig14247.t181.38370.2128olea_europaeaOE9A102444C147.962441.3793
g14247arabidopsis_hallerig14247.t186.170276.0638eucalyptus_grandisKCW6372250.467344.5483
g14247arabidopsis_hallerig14247.t155.319131.9149cyanidioschyzon_merolaeCMP043CT19.512211.257
g14247arabidopsis_hallerig14247.t190.425585.1064camelina_sativaCsa01g035970.152.147249.0798
g14247arabidopsis_hallerig14247.t189.893684.5745camelina_sativaCsa19g046520.152.978149.8433
g14247arabidopsis_hallerig14247.t190.425584.5745camelina_sativaCsa15g071420.152.147248.773
g14247arabidopsis_hallerig14247.t182.978773.9362daucus_carotaKZM9063748.902843.5737
g14247arabidopsis_hallerig14247.t181.38370.2128daucus_carotaKZN0366547.663641.1215
g14247arabidopsis_hallerig14247.t177.659664.3617digitaria_exilisDexi2A01G0013020.1:cds41.126834.0845
g14247arabidopsis_hallerig14247.t178.191564.3617digitaria_exilisDexiUA01G0007280.1:cds43.7536.0119
g14247arabidopsis_hallerig14247.t178.191564.3617digitaria_exilisDexiUA01G0007320.1:cds43.7536.0119
g14247arabidopsis_hallerig14247.t178.191564.3617digitaria_exilisDexi2B01G0012160.1:cds43.7536.0119
g14247arabidopsis_hallerig14247.t177.659663.8298eragrostis_tefEt_2B_019744.CDS43.323435.6083
g14247arabidopsis_hallerig14247.t177.659663.2979eragrostis_tefEt_2A_018162.CDS43.323435.3116
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_dicoccoidesTRIDC5AG026600.139.892233.1536
g14247arabidopsis_hallerig14247.t178.723465.4255triticum_dicoccoidesTRIDC5BG027820.144.71337.1601
g14247arabidopsis_hallerig14247.t176.063864.3617triticum_dicoccoidesTRIDC7AG072900.244.827637.931
g14247arabidopsis_hallerig14247.t188.829886.1702arabidopsis_lyratafgenesh1_pg.C_scaffold_300289352.351150.7837
g14247arabidopsis_hallerig14247.t173.936260.1064saccharum_spontaneumSspon.02G0018120-2B-mRNA-1:cds43.034134.9845
g14247arabidopsis_hallerig14247.t182.978769.6809nymphaea_colorataNC9G0168970.1:cds48.297240.5573
g14247arabidopsis_hallerig14247.t178.191565.4255echinochloa_crusgalliscaffold377.22.cds43.108536.0704
g14247arabidopsis_hallerig14247.t175.531963.2979echinochloa_crusgalliscaffold3.211.cds84.523870.8333
g14247arabidopsis_hallerig14247.t177.127764.3617echinochloa_crusgalliscaffold201.12.cds48.986540.8784
g14247arabidopsis_hallerig14247.t187.23482.4468brassica_oleraceaBo7g021630.151.410748.5893
g14247arabidopsis_hallerig14247.t187.23482.9787brassica_oleraceaBo9g023820.151.572349.0566
g14247arabidopsis_hallerig14247.t183.510671.8085corchorus_capsularisOMO740245042.9936
g14247arabidopsis_hallerig14247.t179.255364.8936oryza_nivaraONIVA09G00530.145.151536.9697
g14247arabidopsis_hallerig14247.t143.61735.1064trifolium_pratenseTp57577_TGAC_v2_mRNA1364434.309627.6151
g14247arabidopsis_hallerig14247.t178.191566.4894cynara_cardunculusKVI0190448.355341.1184

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression