Description

Ensembl ID g14245 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1280 bases Strand Plus strand
Position FJVB01000040.1 : 579380 - 580659 RNA binding domain RNA_pol_A_bac , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g14245 RNA_pol_A_bac PF01000 1.4e-21 1
g14245 RNA_pol_A_bac PF01000 1.4e-21 2
g14245 RNA_pol_L PF01193 3.6e-17 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g14245.t1 967 271aa g14245.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14245arabidopsis_hallerig14247.t185.106485.1064arabidopsis_hallerig14245.t159.040659.0406
g14245arabidopsis_hallerig14248.t181.504776.489arabidopsis_hallerig14245.t195.94190.0369
g14245arabidopsis_hallerig25464.t220.859912.5796arabidopsis_hallerig14245.t148.339529.1513
g14245arabidopsis_hallerig25438.t133.246818.4416arabidopsis_hallerig14245.t147.232526.1993
g14245arabidopsis_hallerig17744.t138.775516.3265arabidopsis_hallerig14245.t114.02215.90406

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g14245arabidopsis_hallerig14245.t148.339530.6273chondrus_crispusCDF3570935.026722.1925
g14245arabidopsis_hallerig14245.t122.878216.2362chondrus_crispusCDF3395140.259728.5714
g14245arabidopsis_hallerig14245.t122.509215.8672chondrus_crispusCDF3778439.610427.9221
g14245arabidopsis_hallerig14245.t158.671644.2804chlamydomonas_reinhardtiiPNW7703942.741932.2581
g14245arabidopsis_hallerig14245.t190.405977.4908papaver_somniferumRZC4512876.32465.4206
g14245arabidopsis_hallerig14245.t190.405978.5978papaver_somniferumRZC7004571.637462.2807
g14245arabidopsis_hallerig14245.t190.036977.4908papaver_somniferumRZC7463275.541865.0155
g14245arabidopsis_hallerig14245.t190.405976.7528papaver_somniferumRZC6693676.32464.7975
g14245arabidopsis_hallerig14245.t171.955760.1476cannabis_sativa_femalecds.evm.model.01.28073.863661.7424
g14245arabidopsis_hallerig14245.t188.560973.4317physcomitrium_patensPp3c14_9440V3.274.074161.4198
g14245arabidopsis_hallerig14245.t168.634757.5646ficus_caricaFCD_00009611-RA:cds60.983651.1475
g14245arabidopsis_hallerig14245.t191.512980.4428citrullus_lanatusCla97C11G215950.177.568.125
g14245arabidopsis_hallerig14245.t190.774979.7048cucumis_sativusKGN6134376.87567.5
g14245arabidopsis_hallerig14245.t192.250981.5498theobroma_cacaoEOX9833378.616469.4969
g14245arabidopsis_hallerig14245.t193.357988.5609arabidopsis_thalianaAT2G15400.179.310375.2351
g14245arabidopsis_hallerig14245.t191.143980.0738cucumis_meloMELO3C008589.2.177.187567.8125
g14245arabidopsis_hallerig14245.t190.405979.7048populus_trichocarpaPotri.009G097600.2.v4.175.851466.8731
g14245arabidopsis_hallerig14245.t194.464988.1919brassica_junceacds.BjuB03g06850S8074.6875
g14245arabidopsis_hallerig14245.t192.619986.7159brassica_junceacds.BjuB04g31490S69.529165.097
g14245arabidopsis_hallerig14245.t176.752870.8487brassica_napusCDX7121973.758968.0851
g14245arabidopsis_hallerig14245.t183.394874.5387brassica_napusCDX7122050.900945.4955
g14245arabidopsis_hallerig14245.t194.464988.1919brassica_napusCDY3663180.250874.9216
g14245arabidopsis_hallerig14245.t194.095988.1919brassica_napusCDY6231280.188775.1572
g14245arabidopsis_hallerig14245.t193.357987.0849brassica_napusCDY3722778.816273.5202
g14245arabidopsis_hallerig14245.t190.405976.7528malus_domestica_goldenmRNA:MD10G007930077.04465.4088
g14245arabidopsis_hallerig14245.t190.036976.0148malus_domestica_goldenmRNA:MD05G007250076.729664.7799
g14245arabidopsis_hallerig14245.t185.977970.4797marchantia_polymorphaPTQ4289271.913658.9506
g14245arabidopsis_hallerig14245.t178.597865.6827prunus_dulcisVVA1825170.764159.1362
g14245arabidopsis_hallerig14245.t190.036977.1218prunus_dulcisVVA1824476.729665.7233
g14245arabidopsis_hallerig14245.t174.538761.6236prunus_persicaONH9171469.655257.5862
g14245arabidopsis_hallerig14245.t190.036977.1218prunus_persicaONH9171076.729665.7233
g14245arabidopsis_hallerig14245.t191.143978.9668cajanus_cajanC.cajan_13934.t66.756857.8378
g14245arabidopsis_hallerig14245.t191.143978.9668glycine_maxKRG8936577.187566.875
g14245arabidopsis_hallerig14245.t191.143978.9668glycine_maxKRH5041277.429567.0846
g14245arabidopsis_hallerig14245.t190.405977.4908lupinus_angustifoliusOIW1022276.32465.4206
g14245arabidopsis_hallerig14245.t189.667977.4908lupinus_angustifoliusOIV9421075.700965.4206
g14245arabidopsis_hallerig14245.t191.143977.8598medicago_truncatulaAES9009277.67366.3522
g14245arabidopsis_hallerig14245.t191.512977.8598phaseolus_vulgarisESW2976577.987466.3522
g14245arabidopsis_hallerig14245.t191.143977.4908pisum_sativumPsat7g129720.1.cds77.187565.625
g14245arabidopsis_hallerig14245.t191.143978.2288vigna_radiataVradi07g04680.177.67366.6667
g14245arabidopsis_hallerig14245.t191.143978.2288vigna_unguiculataVigun03g196000.1.v1.277.67366.6667
g14245arabidopsis_hallerig14245.t191.143978.2288vigna_angularisKOM3180677.67366.6667
g14245arabidopsis_hallerig14245.t191.881980.4428manihot_esculentaOAY2231678.301968.5535
g14245arabidopsis_hallerig14245.t166.789757.5646manihot_esculentaOAY4561668.560659.0909
g14245arabidopsis_hallerig14245.t140.959430.9963capsicum_annuumPHT6645554.950541.5842
g14245arabidopsis_hallerig14245.t133.210326.1993capsicum_annuumPHT8823187.378668.932
g14245arabidopsis_hallerig14245.t132.103325.0923capsicum_annuumPHT7340875.652259.1304
g14245arabidopsis_hallerig14245.t135.424429.1513capsicum_annuumPHT9369177.419463.7097
g14245arabidopsis_hallerig14245.t191.512977.8598capsicum_annuumPHT6743378.48166.7721
g14245arabidopsis_hallerig14245.t192.250977.4908solanum_lycopersicumSolyc05g010300.3.169.060858.0111
g14245arabidopsis_hallerig14245.t189.667976.3838sesamum_indicumSIN_1026188.t76.175664.8903
g14245arabidopsis_hallerig14245.t192.619981.5498helianthus_annuusmRNA:HanXRQr2_Chr16g077560178.437569.0625
g14245arabidopsis_hallerig14245.t192.250981.1808helianthus_annuusmRNA:HanXRQr2_Chr03g010641178.12568.75
g14245arabidopsis_hallerig14245.t193.357981.5498lactuca_sativacds-PLY92309.179.062569.0625
g14245arabidopsis_hallerig14245.t138.007432.1033lolium_perennecds.KYUSt_chr5.1761855.675747.027
g14245arabidopsis_hallerig14245.t149.077542.0664lolium_perennecds.KYUSt_chr5.1761982.098870.3704
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001593.162.264252.8302
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001598.160.789551.5789
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002035.160.629951.4436
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_sangAVESA.00010b.r2.5DG0973610.1.CDS7059.3939
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_sangAVESA.00010b.r2.5CG0899000.1.CDS7059.3939
g14245arabidopsis_hallerig14245.t185.239972.3247avena_sativa_sangAVESA.00010b.r2.5AG0836000.1.CDS7059.3939
g14245arabidopsis_hallerig14245.t153.505545.7565oryza_longistaminataKN541812.1_FGP00167.75757.9439
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_rufipogonORUFI09G00530.171.818259.697
g14245arabidopsis_hallerig14245.t186.346972.6937oryza_brachyanthaOB09G10310.158.354149.1272
g14245arabidopsis_hallerig14245.t185.977970.8487oryza_punctataOPUNC09G00330.171.692359.0769
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_glaberrimaORGLA09G0004200.171.171259.1592
g14245arabidopsis_hallerig14245.t187.084972.6937secale_cerealeSECCE5Rv1G0320950.171.299159.5166
g14245arabidopsis_hallerig14245.t185.239971.9557secale_cerealeSECCE6Rv1G0444680.172.870761.5142
g14245arabidopsis_hallerig14245.t185.239971.2177setaria_viridisTKW3211171.076959.3846
g14245arabidopsis_hallerig14245.t185.608971.2177sorghum_bicolorEER9857670.731758.8415
g14245arabidopsis_hallerig14245.t159.778651.2915setaria_italicaKQL2372470.434860.4348
g14245arabidopsis_hallerig14245.t187.084972.3247triticum_aestivumTraesCS5A02G160900.171.299159.2145
g14245arabidopsis_hallerig14245.t185.977971.9557triticum_aestivumTraesCS7B02G435800.173.968361.9048
g14245arabidopsis_hallerig14245.t186.715972.3247triticum_aestivumTraesCS5B02G158300.170.99759.2145
g14245arabidopsis_hallerig14245.t185.239971.2177triticum_aestivumTraesCS7D02G509400.173.333361.2698
g14245arabidopsis_hallerig14245.t187.084972.3247triticum_aestivumTraesCS5D02G165800.265.013853.9945
g14245arabidopsis_hallerig14245.t185.977971.5867triticum_aestivumTraesCS7A02G519700.173.734261.3924
g14245arabidopsis_hallerig14245.t185.239971.9557zea_maysZm00001eb095630_P00269.161758.3832
g14245arabidopsis_hallerig14245.t188.191973.4317ananas_comosusAco020532.1.mrna169.679358.0175
g14245arabidopsis_hallerig14245.t187.084973.4317asparagus_officinalisONK7031563.270853.3512
g14245arabidopsis_hallerig14245.t185.977971.9557triticum_turgidumTRITD7Bv1G219430.369.9758.5586
g14245arabidopsis_hallerig14245.t187.084972.3247triticum_turgidumTRITD5Av1G119630.471.299159.2145
g14245arabidopsis_hallerig14245.t186.715972.3247triticum_turgidumTRITD5Bv1G099090.870.99759.2145
g14245arabidopsis_hallerig14245.t185.977971.5867triticum_turgidumTRITD7Av1G267650.270.606158.7879
g14245arabidopsis_hallerig14245.t153.505536.5314caenorhabditis_elegansC36B1.3.151.418435.1064
g14245arabidopsis_hallerig14245.t151.660536.1624drosophila_melanogasterFBpp008012150.909135.6364
g14245arabidopsis_hallerig14245.t190.036975.2768amborella_trichopodaERN1463775.308662.963
g14245arabidopsis_hallerig14245.t167.158756.8266corylus_avellanaCav04g02170.t164.31154.417
g14245arabidopsis_hallerig14245.t191.881980.4428gossypium_raimondiiKJB7765678.301968.5535
g14245arabidopsis_hallerig14245.t192.619981.9188gossypium_raimondiiKJB4737678.930869.8113
g14245arabidopsis_hallerig14245.t183.763870.8487brachypodium_distachyonKQJ8690268.787958.1818
g14245arabidopsis_hallerig14245.t153.874535.0554homo_sapiensENSP0000021925253.090934.5455
g14245arabidopsis_hallerig14245.t189.298977.4908fraxinus_excelsiorFRAEX38873_v2_000203620.1.cds75.862165.8307
g14245arabidopsis_hallerig14245.t190.036977.4908fraxinus_excelsiorFRAEX38873_v2_000249470.1.cds76.48965.8307
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_glumipatulaOGLUM09G00800.168.299756.7723
g14245arabidopsis_hallerig14245.t150.553540.9594eragrostis_curvulaTVU1077571.354257.8125
g14245arabidopsis_hallerig14245.t184.870871.2177eragrostis_curvulaTVU1077463.013752.8767
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_indicaBGIOSGA030281-PA71.818259.697
g14245arabidopsis_hallerig14245.t191.881980.0738vitis_viniferaVitvi03g00543_P00278.301968.239
g14245arabidopsis_hallerig14245.t190.774978.2288nicotiana_attenuataOIT2425177.358566.6667
g14245arabidopsis_hallerig14245.t190.036976.0148coffea_canephoraCDO9720976.48964.5768
g14245arabidopsis_hallerig14245.t191.143980.0738ipomoea_trilobaitb14g02950.t177.429568.0251
g14245arabidopsis_hallerig14245.t185.977971.5867triticum_urartuTuG1812G0700005602.01.T0173.734261.3924
g14245arabidopsis_hallerig14245.t187.084972.3247triticum_urartuTuG1812G0500001880.01.T0171.299159.2145
g14245arabidopsis_hallerig14245.t186.715972.3247oryza_meridionalisOMERI09G00390.177.049264.2623
g14245arabidopsis_hallerig14245.t139.483432.1033prunus_aviumPav_sc0000136.1_g080.1.mk:mrna65.644253.3742
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_sativaOs09t0110400-0271.818259.697
g14245arabidopsis_hallerig14245.t180.073866.4207pistacia_veracds-EVM0011777.173.06460.6061
g14245arabidopsis_hallerig14245.t174.538763.0996pistacia_veracds-EVM0028068.172.924261.7329
g14245arabidopsis_hallerig14245.t140.959427.3063quercus_subercds-POE83334.133.636422.4242
g14245arabidopsis_hallerig14245.t140.959428.0443quercus_subercds-POE46918.126.491618.1384
g14245arabidopsis_hallerig14245.t147.232530.2583galdieria_sulphurariaEME2839849.805431.9066
g14245arabidopsis_hallerig14245.t152.767535.0554ciona_savignyiENSCSAVP0000000365751.624534.296
g14245arabidopsis_hallerig14245.t191.143974.5387chenopodium_quinoaAUR62026162-RA:cds77.67363.522
g14245arabidopsis_hallerig14245.t191.143974.1697chenopodium_quinoaAUR62013252-RA:cds77.67363.2075
g14245arabidopsis_hallerig14245.t185.977970.4797dioscorea_rotundataDRNTG_33997.173.270460.0629
g14245arabidopsis_hallerig14245.t192.250981.5498citrus_clementinaESR3619578.369969.279
g14245arabidopsis_hallerig14245.t163.468653.8745juglans_regiacds.Jr16_21960_p173.819762.6609
g14245arabidopsis_hallerig14245.t157.564642.4354ostreococcus_lucimarinusABO9450049.056636.1635
g14245arabidopsis_hallerig14245.t150.922535.4244saccharomyces_cerevisiaeYIL021W43.396230.1887
g14245arabidopsis_hallerig14245.t192.988981.1808actinidia_chinensisPSS1921178.996968.9655
g14245arabidopsis_hallerig14245.t192.988981.1808actinidia_chinensisPSS2611878.996968.9655
g14245arabidopsis_hallerig14245.t187.453971.9557leersia_perrieriLPERR09G00790.168.895356.686
g14245arabidopsis_hallerig14245.t187.084972.3247aegilops_tauschiiAET5Gv20405800.165.193454.1436
g14245arabidopsis_hallerig14245.t185.239971.2177aegilops_tauschiiAET7Gv21269900.37058.4848
g14245arabidopsis_hallerig14245.t187.084974.5387musa_acuminataMa01_p19980.171.515261.2121
g14245arabidopsis_hallerig14245.t129.520325.4613musa_acuminataMa03_p12770.157.142949.2857
g14245arabidopsis_hallerig14245.t187.822970.1107selaginella_moellendorffiiEFJ3815374.37559.375
g14245arabidopsis_hallerig14245.t187.822970.1107selaginella_moellendorffiiEFJ1576674.37559.375
g14245arabidopsis_hallerig14245.t187.084972.6937panicum_halliiPUZ6979772.171360.2446
g14245arabidopsis_hallerig14245.t194.464988.1919arabis_alpinaKFK400188074.6875
g14245arabidopsis_hallerig14245.t190.774979.3358quercus_lobataQL11p034241:mrna77.602567.8233
g14245arabidopsis_hallerig14245.t195.202986.7159eutrema_salsugineumESQ5101069.918763.6856
g14245arabidopsis_hallerig14245.t194.833987.4539eutrema_salsugineumESQ3040680.312574.0625
g14245arabidopsis_hallerig14245.t189.667978.2288kalanchoe_fedtschenkoiKaladp0047s0046.1.v1.176.415166.6667
g14245arabidopsis_hallerig14245.t185.239971.9557hordeum_vulgareHORVU.MOREX.r3.7HG0745350.170.212859.2705
g14245arabidopsis_hallerig14245.t186.346971.5867hordeum_vulgareHORVU.MOREX.r3.5HG0467880.170.694958.6103
g14245arabidopsis_hallerig14245.t190.774976.7528rosa_chinensisPRQ2293577.358565.4088
g14245arabidopsis_hallerig14245.t129.889322.1402rosa_chinensisPRQ3399566.942149.5868
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_barthiiOBART09G00500.168.299756.7723
g14245arabidopsis_hallerig14245.t178.597864.2066chara_brauniiGBG8953868.051155.5911
g14245arabidopsis_hallerig14245.t192.250979.3358corymbia_citriodoracds-KAF8020179.178.12567.1875
g14245arabidopsis_hallerig14245.t190.774984.5018brassica_rapa_ro18A09p011870.1_BraROA.179.611674.11
g14245arabidopsis_hallerig14245.t194.464988.1919brassica_rapa_ro18A07p007240.1_BraROA.180.250874.9216
g14245arabidopsis_hallerig14245.t190.036977.4908olea_europaeaOE9A088721C176.48965.8307
g14245arabidopsis_hallerig14245.t188.929977.1218olea_europaeaOE9A062734C175.548665.5172
g14245arabidopsis_hallerig14245.t190.036977.8598olea_europaeaOE9A056794C176.48966.1442
g14245arabidopsis_hallerig14245.t188.929977.1218olea_europaeaOE9A102444C175.548665.5172
g14245arabidopsis_hallerig14245.t191.143980.0738eucalyptus_grandisKCW6372276.94767.6012
g14245arabidopsis_hallerig14245.t160.885638.7454cyanidioschyzon_merolaeCMP043CT30.956819.6998
g14245arabidopsis_hallerig14245.t196.3190.0369camelina_sativaCsa01g035970.180.061374.8466
g14245arabidopsis_hallerig14245.t195.94190.4059camelina_sativaCsa19g046520.181.504776.8025
g14245arabidopsis_hallerig14245.t196.3190.0369camelina_sativaCsa15g071420.180.061374.8466
g14245arabidopsis_hallerig14245.t190.036980.4428daucus_carotaKZM9063776.48968.3386
g14245arabidopsis_hallerig14245.t188.191975.6458daucus_carotaKZN0366574.454863.8629
g14245arabidopsis_hallerig14245.t186.715974.1697digitaria_exilisDexi2A01G0013020.1:cds66.197256.6197
g14245arabidopsis_hallerig14245.t186.715974.1697digitaria_exilisDexiUA01G0007280.1:cds69.940559.8214
g14245arabidopsis_hallerig14245.t186.715974.1697digitaria_exilisDexiUA01G0007320.1:cds69.940559.8214
g14245arabidopsis_hallerig14245.t186.715974.1697digitaria_exilisDexi2B01G0012160.1:cds69.940559.8214
g14245arabidopsis_hallerig14245.t185.608971.9557eragrostis_tefEt_2B_019744.CDS68.842757.8635
g14245arabidopsis_hallerig14245.t185.239971.2177eragrostis_tefEt_2A_018162.CDS68.54657.27
g14245arabidopsis_hallerig14245.t187.084972.3247triticum_dicoccoidesTRIDC5AG026600.163.611952.8302
g14245arabidopsis_hallerig14245.t187.084972.6937triticum_dicoccoidesTRIDC5BG027820.171.299159.5166
g14245arabidopsis_hallerig14245.t163.099650.5535triticum_dicoccoidesTRIDC7AG072900.253.60542.9467
g14245arabidopsis_hallerig14245.t196.3193.3579arabidopsis_lyratafgenesh1_pg.C_scaffold_300289381.818279.3103
g14245arabidopsis_hallerig14245.t183.763869.3727saccharum_spontaneumSspon.02G0018120-2B-mRNA-1:cds70.278658.2043
g14245arabidopsis_hallerig14245.t189.298975.2768nymphaea_colorataNC9G0168970.1:cds74.922663.1579
g14245arabidopsis_hallerig14245.t186.346973.4317echinochloa_crusgalliscaffold377.22.cds68.621758.3578
g14245arabidopsis_hallerig14245.t150.184542.0664echinochloa_crusgalliscaffold3.211.cds80.952467.8571
g14245arabidopsis_hallerig14245.t186.346973.0627echinochloa_crusgalliscaffold201.12.cds79.054166.8919
g14245arabidopsis_hallerig14245.t194.464988.1919brassica_oleraceaBo7g021630.180.250874.9216
g14245arabidopsis_hallerig14245.t194.095987.8229brassica_oleraceaBo9g023820.180.188774.8428
g14245arabidopsis_hallerig14245.t190.774978.5978corchorus_capsularisOMO7402478.343967.8344
g14245arabidopsis_hallerig14245.t187.453972.6937oryza_nivaraONIVA09G00530.171.818259.697
g14245arabidopsis_hallerig14245.t163.837653.8745trifolium_pratenseTp57577_TGAC_v2_mRNA1364472.384961.0879
g14245arabidopsis_hallerig14245.t187.453976.7528cynara_cardunculusKVI0190477.960568.4211

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression