Description

Ensembl ID g12905 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1766 bases Strand Plus strand
Position FJVB01000034.1 : 76166 - 77931 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g12905 Fcf1 PF04900 4e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g12905.t1 1159 118aa g12905.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12905arabidopsis_hallerig08088.t158.673558.6735arabidopsis_hallerig12905.t197.457697.4576
g12905arabidopsis_hallerig09709.t125.217425.2174arabidopsis_hallerig12905.t124.576324.5763
g12905arabidopsis_hallerig09706.t157.142954.0816arabidopsis_hallerig12905.t194.915389.8305
g12905arabidopsis_hallerig03352.t112.98257.36842arabidopsis_hallerig12905.t131.355917.7966

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12905arabidopsis_hallerig12905.t121.186416.9492chondrus_crispusCDF3997822.935818.3486
g12905arabidopsis_hallerig12905.t174.576359.322chlamydomonas_reinhardtiiPNW7217045.833336.4583
g12905arabidopsis_hallerig12905.t169.491558.4746papaver_somniferumRZC7378830.943426.0377
g12905arabidopsis_hallerig12905.t189.830578.8136cannabis_sativa_femalecds.evm.model.07.126554.081647.449
g12905arabidopsis_hallerig12905.t185.593270.339physcomitrium_patensPp3c7_15560V3.251.010141.9192
g12905arabidopsis_hallerig12905.t183.898369.4915physcomitrium_patensPp3c11_12810V3.25041.4141
g12905arabidopsis_hallerig12905.t185.593276.2712beta_vulgarisKMT2038051.010145.4545
g12905arabidopsis_hallerig12905.t191.525479.661citrullus_lanatusCla97C10G199020.154.545547.4747
g12905arabidopsis_hallerig12905.t191.525479.661cucumis_sativusKGN5945454.545547.4747
g12905arabidopsis_hallerig12905.t191.525478.8136theobroma_cacaoEOX9582354.545546.9697
g12905arabidopsis_hallerig12905.t173.728872.0339arabidopsis_thalianaAT1G26530.148.876447.7528
g12905arabidopsis_hallerig12905.t175.423767.7966cucumis_meloMELO3C009766.2.148.369643.4783
g12905arabidopsis_hallerig12905.t185.593275.4237populus_trichocarpaPotri.002G166200.1.v4.151.010144.9495
g12905arabidopsis_hallerig12905.t187.288177.1186populus_trichocarpaPotri.014G092600.3.v4.152.020245.9596
g12905arabidopsis_hallerig12905.t193.220386.4407brassica_junceacds.BjuB06g58210S56.122452.0408
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_junceacds.BjuA05g01470S57.142952.551
g12905arabidopsis_hallerig12905.t194.915388.1356brassica_napusCDY6520857.142953.0612
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_napusCDY4202154.368950
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_napusCDY2732650.224246.1883
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_napusCDX7999957.142952.551
g12905arabidopsis_hallerig12905.t189.830581.3559malus_domestica_goldenmRNA:MD01G005580053.535448.4848
g12905arabidopsis_hallerig12905.t186.440769.4915marchantia_polymorphaPTQ4757451.256341.206
g12905arabidopsis_hallerig12905.t189.830579.661prunus_dulcisVVA2369736.551732.4138
g12905arabidopsis_hallerig12905.t189.830579.661prunus_persicaONI2330553.535447.4747
g12905arabidopsis_hallerig12905.t188.98378.8136cajanus_cajanC.cajan_32965.t44.303839.2405
g12905arabidopsis_hallerig12905.t188.135677.1186cajanus_cajanC.cajan_10831.t48.826342.723
g12905arabidopsis_hallerig12905.t149.152536.4407glycine_maxKRG9709731.868123.6264
g12905arabidopsis_hallerig12905.t188.135677.1186glycine_maxKRH2674252.525345.9596
g12905arabidopsis_hallerig12905.t174.576364.4068glycine_maxKRH6885046.073339.7906
g12905arabidopsis_hallerig12905.t188.135677.1186glycine_maxKRH2259052.525345.9596
g12905arabidopsis_hallerig12905.t188.135679.661lupinus_angustifoliusOIW2168752.791947.7157
g12905arabidopsis_hallerig12905.t185.593272.8814medicago_truncatulaAES7673551.010143.4343
g12905arabidopsis_hallerig12905.t185.593274.5763medicago_truncatulaAES8273351.010144.4444
g12905arabidopsis_hallerig12905.t187.288177.1186phaseolus_vulgarisESW2199052.020245.9596
g12905arabidopsis_hallerig12905.t185.593277.1186pisum_sativumPsat3g005280.1.cds51.010145.9596
g12905arabidopsis_hallerig12905.t186.440774.5763vigna_radiataVradi0234s00150.148.803842.1053
g12905arabidopsis_hallerig12905.t187.288177.1186vigna_unguiculataVigun05g229800.1.v1.252.020245.9596
g12905arabidopsis_hallerig12905.t187.288176.2712manihot_esculentaOAY3725752.020245.4545
g12905arabidopsis_hallerig12905.t187.288177.9661capsicum_annuumPHT8893649.519244.2308
g12905arabidopsis_hallerig12905.t188.98378.8136solanum_tuberosumPGSC0003DMT40000670653.030346.9697
g12905arabidopsis_hallerig12905.t188.98378.8136solanum_lycopersicumSolyc03g121140.3.112.42611.0059
g12905arabidopsis_hallerig12905.t191.525483.8983helianthus_annuusmRNA:HanXRQr2_Chr17g082050154.545550
g12905arabidopsis_hallerig12905.t190.67880.5085lactuca_sativacds-PLY77483.162.209355.2326
g12905arabidopsis_hallerig12905.t160.169551.6949lactuca_sativacds-PLY80511.155.468847.6562
g12905arabidopsis_hallerig12905.t183.050873.7288lolium_perennecds.KYUSt_chr7.3752930.434827.0186
g12905arabidopsis_hallerig12905.t184.745874.5763lolium_perennecds.KYUSt_chr1.3885041.493836.5145
g12905arabidopsis_hallerig12905.t183.898375.4237avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003112.149.748744.7236
g12905arabidopsis_hallerig12905.t184.745874.5763avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001952.234.602130.4498
g12905arabidopsis_hallerig12905.t183.898375.4237avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003308.149.253744.2786
g12905arabidopsis_hallerig12905.t184.745874.5763avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001931.137.03732.5926
g12905arabidopsis_hallerig12905.t183.898375.4237avena_sativa_sangAVESA.00010b.r2.5CG0862470.1.CDS49.748744.7236
g12905arabidopsis_hallerig12905.t184.745874.5763avena_sativa_sangAVESA.00010b.r2.1AG0038050.1.CDS50.251344.2211
g12905arabidopsis_hallerig12905.t183.898375.4237avena_sativa_sangAVESA.00010b.r2.7AG1204260.1.CDS49.748744.7236
g12905arabidopsis_hallerig12905.t183.898375.4237avena_sativa_sangAVESA.00010b.r2.7DG1339810.1.CDS64.285757.7922
g12905arabidopsis_hallerig12905.t183.898373.7288avena_sativa_sangAVESA.00010b.r2.1AG0006500.1.CDS49.748743.7186
g12905arabidopsis_hallerig12905.t184.745874.5763avena_sativa_sangAVESA.00010b.r2.1DG0157140.1.CDS50.251344.2211
g12905arabidopsis_hallerig12905.t185.593274.5763oryza_longistaminataKN538819.1_FGP00149.268342.9268
g12905arabidopsis_hallerig12905.t183.898372.8814oryza_rufipogonORUFI06G03940.147.368441.1483
g12905arabidopsis_hallerig12905.t185.593273.7288oryza_brachyanthaOB06G13640.150.753843.7186
g12905arabidopsis_hallerig12905.t134.745825.4237oryza_punctataOPUNC06G03680.135.042725.641
g12905arabidopsis_hallerig12905.t185.593274.5763oryza_glaberrimaORGLA06G0036300.147.641541.5094
g12905arabidopsis_hallerig12905.t184.745875.4237secale_cerealeSECCE4Rv1G0262380.150.251344.7236
g12905arabidopsis_hallerig12905.t184.745875.4237setaria_viridisTKW2012750.251344.7236
g12905arabidopsis_hallerig12905.t183.898372.8814sorghum_bicolorEER8923249.748743.2161
g12905arabidopsis_hallerig12905.t184.745875.4237setaria_italicaKQL0967445.454540.4545
g12905arabidopsis_hallerig12905.t184.745874.5763triticum_aestivumTraesCS7A02G117600.150.251344.2211
g12905arabidopsis_hallerig12905.t183.898374.5763triticum_aestivumTraesCS7D02G113200.149.748744.2211
g12905arabidopsis_hallerig12905.t184.745876.2712triticum_aestivumTraesCS7B02G014700.250.251345.2261
g12905arabidopsis_hallerig12905.t183.898372.8814zea_maysZm00001eb376230_P00149.748743.2161
g12905arabidopsis_hallerig12905.t184.745872.8814zea_maysZm00001eb376200_P00155.555647.7778
g12905arabidopsis_hallerig12905.t183.898372.8814zea_maysZm00001eb376300_P00149.748743.2161
g12905arabidopsis_hallerig12905.t183.898372.8814zea_maysZm00001eb376270_P0015547.7778
g12905arabidopsis_hallerig12905.t184.745872.8814zea_maysZm00001eb376330_P00150.251343.2161
g12905arabidopsis_hallerig12905.t187.288177.1186ananas_comosusAco000356.1.mrna152.020245.9596
g12905arabidopsis_hallerig12905.t145.762735.5932asparagus_officinalisONK6648940.298531.3433
g12905arabidopsis_hallerig12905.t184.745876.2712triticum_turgidumTRITD7Bv1G004470.449.261144.335
g12905arabidopsis_hallerig12905.t184.745874.5763triticum_turgidumTRITD7Av1G034720.147.169841.5094
g12905arabidopsis_hallerig12905.t163.559338.1356caenorhabditis_elegansF30A10.9.138.265322.9592
g12905arabidopsis_hallerig12905.t166.949248.3051drosophila_melanogasterFBpp007947039.528.5
g12905arabidopsis_hallerig12905.t125.423725.4237amborella_trichopodaERN0909736.144636.1446
g12905arabidopsis_hallerig12905.t177.966168.6441corylus_avellanaCav07g06900.t141.62936.6516
g12905arabidopsis_hallerig12905.t191.525479.661gossypium_raimondiiKJB4143454.545547.4747
g12905arabidopsis_hallerig12905.t184.745875.4237brachypodium_distachyonKQK1951450.251344.7236
g12905arabidopsis_hallerig12905.t175.423758.4746homo_sapiensENSP0000034439344.949534.8485
g12905arabidopsis_hallerig12905.t189.830577.9661fraxinus_excelsiorFRAEX38873_v2_000000640.1.cds53.535446.4646
g12905arabidopsis_hallerig12905.t182.203471.1864oryza_glumipatulaOGLUM06G04000.145.754739.6226
g12905arabidopsis_hallerig12905.t185.593275.4237eragrostis_curvulaTVU1245739.147334.4961
g12905arabidopsis_hallerig12905.t185.593274.5763oryza_indicaBGIOSGA021867-PA50.753844.2211
g12905arabidopsis_hallerig12905.t187.288177.9661vitis_viniferaVitvi15g04618_P00152.020246.4646
g12905arabidopsis_hallerig12905.t187.288177.9661vitis_viniferaVitvi15g04598_P00140.551236.2205
g12905arabidopsis_hallerig12905.t190.67879.661nicotiana_attenuataOIT0737728.08424.6719
g12905arabidopsis_hallerig12905.t126.271224.5763coffea_canephoraCDP2169327.927926.1261
g12905arabidopsis_hallerig12905.t189.830577.1186coffea_canephoraCDP0873553.535445.9596
g12905arabidopsis_hallerig12905.t188.98378.8136ipomoea_trilobaitb11g00190.t153.030346.9697
g12905arabidopsis_hallerig12905.t184.745874.5763triticum_urartuTuG1812G0700001208.01.T0150.251344.2211
g12905arabidopsis_hallerig12905.t183.898372.8814oryza_meridionalisOMERI06G04480.350.510243.8776
g12905arabidopsis_hallerig12905.t185.593274.5763oryza_sativaOs06t0158600-0150.753844.2211
g12905arabidopsis_hallerig12905.t189.830580.5085pistacia_veracds-EVM0013414.153.535447.9798
g12905arabidopsis_hallerig12905.t176.271265.2542quercus_subercds-POE98170.148.387141.3979
g12905arabidopsis_hallerig12905.t176.271265.2542quercus_subercds-POE51273.149.180342.0765
g12905arabidopsis_hallerig12905.t169.491552.5424galdieria_sulphurariaEME3137941.624431.4721
g12905arabidopsis_hallerig12905.t164.406853.3898ciona_savignyiENSCSAVP000000084154033.1579
g12905arabidopsis_hallerig12905.t184.745874.5763chenopodium_quinoaAUR62004429-RA:cds49.261143.3498
g12905arabidopsis_hallerig12905.t185.593275.4237chenopodium_quinoaAUR62022636-RA:cds51.010144.9495
g12905arabidopsis_hallerig12905.t188.135677.1186dioscorea_rotundataDRNTG_09784.152.525345.9596
g12905arabidopsis_hallerig12905.t191.525478.8136citrus_clementinaESR5815554.545546.9697
g12905arabidopsis_hallerig12905.t189.830577.9661juglans_regiacds.Jr07_07870_p153.535446.4646
g12905arabidopsis_hallerig12905.t173.728856.7797ostreococcus_lucimarinusABO9651443.533.5
g12905arabidopsis_hallerig12905.t173.728855.9322saccharomyces_cerevisiaeYDR339C46.031734.9206
g12905arabidopsis_hallerig12905.t188.98380.5085actinidia_chinensisPSS0398353.030347.9798
g12905arabidopsis_hallerig12905.t188.98380.5085actinidia_chinensisPSS2424253.030347.9798
g12905arabidopsis_hallerig12905.t186.440776.2712leersia_perrieriLPERR08G12210.151.256345.2261
g12905arabidopsis_hallerig12905.t183.898374.5763aegilops_tauschiiAET7Gv20298800.141.596636.9748
g12905arabidopsis_hallerig12905.t188.135679.661musa_acuminataMa04_p21960.152.525347.4747
g12905arabidopsis_hallerig12905.t186.440779.661musa_acuminataMa05_p11390.132.484129.9363
g12905arabidopsis_hallerig12905.t182.203471.1864selaginella_moellendorffiiEFJ1214648.542
g12905arabidopsis_hallerig12905.t182.203471.1864selaginella_moellendorffiiEFJ2938644.700538.7097
g12905arabidopsis_hallerig12905.t186.440776.2712panicum_halliiPUZ6210551.256345.2261
g12905arabidopsis_hallerig12905.t194.915389.8305arabis_alpinaKFK3742157.142954.0816
g12905arabidopsis_hallerig12905.t186.440773.7288quercus_lobataQL04p058903:mrna51.515243.9394
g12905arabidopsis_hallerig12905.t186.440773.7288quercus_lobataQL06p021685:mrna42.148835.9504
g12905arabidopsis_hallerig12905.t196.610288.983eutrema_salsugineumESQ3926258.163353.5714
g12905arabidopsis_hallerig12905.t183.050871.1864kalanchoe_fedtschenkoiKaladp0081s0268.1.v1.148.514941.5842
g12905arabidopsis_hallerig12905.t183.050873.7288hordeum_vulgareHORVU.MOREX.r3.7HG0654170.148.275942.8571
g12905arabidopsis_hallerig12905.t191.525478.8136rosa_chinensisPRQ5835654.545546.9697
g12905arabidopsis_hallerig12905.t185.593273.7288oryza_barthiiOBART06G03880.147.641541.0377
g12905arabidopsis_hallerig12905.t179.66165.2542chara_brauniiGBG7570547.236238.6935
g12905arabidopsis_hallerig12905.t190.67880.5085corymbia_citriodoracds-KAF8026946.154.040447.9798
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_rapa_ro18A05p002720.1_BraROA.155.172450.7389
g12905arabidopsis_hallerig12905.t152.542442.3729olea_europaeaOE9A089285C156.363645.4545
g12905arabidopsis_hallerig12905.t189.830577.1186olea_europaeaOE9A098456C242.231136.255
g12905arabidopsis_hallerig12905.t126.271225.4237olea_europaeaOE9A115724C16260
g12905arabidopsis_hallerig12905.t189.830577.1186olea_europaeaOE9A014302C142.231136.255
g12905arabidopsis_hallerig12905.t190.67878.8136eucalyptus_grandisKCW7154154.040446.9697
g12905arabidopsis_hallerig12905.t169.491550cyanidioschyzon_merolaeCML046CT41.836730.102
g12905arabidopsis_hallerig12905.t187.288179.661daucus_carotaKZM9381052.020247.4747
g12905arabidopsis_hallerig12905.t17.627125.9322daucus_carotaKZN045316.338034.92958
g12905arabidopsis_hallerig12905.t185.593274.5763digitaria_exilisDexi4A01G0004240.1:cds45.909140
g12905arabidopsis_hallerig12905.t185.593274.5763digitaria_exilisDexi4B01G0006660.1:cds50.753844.2211
g12905arabidopsis_hallerig12905.t185.593275.4237eragrostis_tefEt_2B_020721.CDS47.417841.784
g12905arabidopsis_hallerig12905.t185.593275.4237eragrostis_tefEt_2A_016556.CDS49.753743.8424
g12905arabidopsis_hallerig12905.t184.745876.2712triticum_dicoccoidesTRIDC7BG002060.349.751244.7761
g12905arabidopsis_hallerig12905.t184.745874.5763triticum_dicoccoidesTRIDC7AG013740.447.846942.1053
g12905arabidopsis_hallerig12905.t181.355981.3559arabidopsis_lyrataAl_scaffold_0001_284038.438.4
g12905arabidopsis_hallerig12905.t155.932246.6102saccharum_spontaneumSspon.08G0014460-2D-mRNA-1:cds39.52132.9341
g12905arabidopsis_hallerig12905.t126.271226.2712saccharum_spontaneumSspon.08G0014460-1A-mRNA-1:cds27.927927.9279
g12905arabidopsis_hallerig12905.t175.423765.2542nymphaea_colorataNC9G0112890.1:cds40.825735.3211
g12905arabidopsis_hallerig12905.t183.050872.0339echinochloa_crusgalliscaffold367.4.cds49.246242.7136
g12905arabidopsis_hallerig12905.t183.050872.0339echinochloa_crusgalliscaffold10.324.cds49.494942.9293
g12905arabidopsis_hallerig12905.t183.050872.0339echinochloa_crusgalliscaffold34.443.cds46.009439.9061
g12905arabidopsis_hallerig12905.t194.915387.2881brassica_oleraceaBo4g196100.149.122845.1754
g12905arabidopsis_hallerig12905.t190.67877.9661corchorus_capsularisOMO6436171.333361.3333
g12905arabidopsis_hallerig12905.t183.898372.8814oryza_nivaraONIVA06G05240.147.368441.1483
g12905arabidopsis_hallerig12905.t185.593273.7288trifolium_pratenseTp57577_TGAC_v2_mRNA485851.010143.9394
g12905arabidopsis_hallerig12905.t190.67883.0508cynara_cardunculusKVH9727753.233848.7562

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression