Description

Ensembl ID g12900 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 13784 bases Strand Plus strand
Position FJVB01000034.1 : 31026 - 44809 RNA binding domain Symplekin_C , SYMPK_PTA1_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g12900 Symplekin_C PF12295 3.3e-75 1
g12900 Symplekin_C PF12295 3.3e-75 2
g12900 SYMPK_PTA1_N PF11935 2.3e-57 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g12900.t1 4634 1397aa g12900.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12900arabidopsis_hallerig18517.t1.cds136.877120.598arabidopsis_hallerig12900.t17.94564.43808
g12900arabidopsis_hallerig28632.t146.653130.8316arabidopsis_hallerig12900.t149.391632.6414
g12900arabidopsis_hallerig08112.t1.cds137.242517.2742arabidopsis_hallerig12900.t116.82187.80243
g12900arabidopsis_hallerig04696.t1.cds135.416716.9872arabidopsis_hallerig12900.t115.81967.58769
g12900arabidopsis_hallerig23555.t1.cds134.562215.5146arabidopsis_hallerig12900.t116.10597.22978
g12900arabidopsis_hallerig21198.t1.cds130.654213.8318arabidopsis_hallerig12900.t111.73945.29707
g12900arabidopsis_hallerig12675.t1.cds127.45112.656arabidopsis_hallerig12900.t111.02365.08232

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12900arabidopsis_hallerig12900.t132.641417.0365chondrus_crispusCDF4039237.163819.3969
g12900arabidopsis_hallerig12900.t135.647820.6156chlamydomonas_reinhardtiiPNW8687024.813214.3498
g12900arabidopsis_hallerig12900.t142.376528.9907papaver_somniferumRZC4696852.715936.0641
g12900arabidopsis_hallerig12900.t168.360853.1854cannabis_sativa_femalecds.evm.model.01.281171.750655.8227
g12900arabidopsis_hallerig12900.t114.602711.1668ficus_caricaFCD_00009048-RA:cds75.836457.9926
g12900arabidopsis_hallerig12900.t136.793127.2011ficus_caricaFCD_00035807-RA:cds62.606646.285
g12900arabidopsis_hallerig12900.t152.040139.9427ficus_caricaFCD_00009047-RA:cds69.903853.6538
g12900arabidopsis_hallerig12900.t158.55444.8819beta_vulgarisKMT0024766.234850.7692
g12900arabidopsis_hallerig12900.t164.710149.8926citrullus_lanatusCla97C11G220870.169.27253.41
g12900arabidopsis_hallerig12900.t113.314210.2362cucumis_sativusKGN6029376.543258.8477
g12900arabidopsis_hallerig12900.t150.107438.4395cucumis_sativusKGN6029467.437451.7341
g12900arabidopsis_hallerig12900.t168.503954.5455theobroma_cacaoEOY1557271.578256.9933
g12900arabidopsis_hallerig12900.t191.982890.7659arabidopsis_thalianaAT1G27595.196.981195.6981
g12900arabidopsis_hallerig12900.t164.638549.5347cucumis_meloMELO3C003489.2.169.195453.0268
g12900arabidopsis_hallerig12900.t167.716552.9706populus_trichocarpaPotri.002G107400.11.v4.170.967755.5139
g12900arabidopsis_hallerig12900.t184.681580.1718brassica_junceacds.BjuB03g44370S90.374385.5615
g12900arabidopsis_hallerig12900.t184.824680.1002brassica_junceacds.BjuA09g26570S91.013885.9447
g12900arabidopsis_hallerig12900.t185.039479.8139brassica_napusCDX9009588.392982.9613
g12900arabidopsis_hallerig12900.t185.182580.6013brassica_napusCDX8492190.563285.6925
g12900arabidopsis_hallerig12900.t185.898481.1024brassica_napusCDY1178888.495683.5546
g12900arabidopsis_hallerig12900.t184.824680.1002brassica_napusCDY2762191.013885.9447
g12900arabidopsis_hallerig12900.t18.804587.22978malus_domestica_goldenmRNA:MD08G017240059.134648.5577
g12900arabidopsis_hallerig12900.t18.303516.87187malus_domestica_goldenmRNA:MD04G012260073.417760.7595
g12900arabidopsis_hallerig12900.t167.358653.1138malus_domestica_goldenmRNA:MD15G033510067.893253.5354
g12900arabidopsis_hallerig12900.t168.360853.7581prunus_dulcisVVA2025471.162455.9613
g12900arabidopsis_hallerig12900.t168.074453.4717prunus_persicaONI3553870.653855.4978
g12900arabidopsis_hallerig12900.t158.124644.8103cajanus_cajanC.cajan_02701.t71.858455.3982
g12900arabidopsis_hallerig12900.t166.714451.539glycine_maxKRH5285969.345253.5714
g12900arabidopsis_hallerig12900.t167.28750.68glycine_maxKRH6215269.992652.7178
g12900arabidopsis_hallerig12900.t147.745236.5784lupinus_angustifoliusOIV9783166.368250.8458
g12900arabidopsis_hallerig12900.t112.956310.8805lupinus_angustifoliusOIV9783275.103763.0705
g12900arabidopsis_hallerig12900.t148.103137.0795lupinus_angustifoliusOIV9662266.799251.4911
g12900arabidopsis_hallerig12900.t113.886910.6657lupinus_angustifoliusOIV9662172.932356.015
g12900arabidopsis_hallerig12900.t165.354350.1074medicago_truncatulaKEH3611568.236252.3169
g12900arabidopsis_hallerig12900.t166.356550.8948phaseolus_vulgarisESW0966969.07652.9806
g12900arabidopsis_hallerig12900.t165.783850.2505pisum_sativumPsat5g017960.1.cds68.83952.5843
g12900arabidopsis_hallerig12900.t163.278548.3178vigna_radiataVradi05g08320.167.071351.214
g12900arabidopsis_hallerig12900.t165.855450.68vigna_unguiculataVigun09g187300.1.v1.268.503352.7178
g12900arabidopsis_hallerig12900.t130.422324.9105vigna_angularisKOM4182777.272763.2727
g12900arabidopsis_hallerig12900.t169.219853.8296manihot_esculentaOAY2313672.488856.3718
g12900arabidopsis_hallerig12900.t158.55444.3808capsicum_annuumPHT8441864.920649.2063
g12900arabidopsis_hallerig12900.t162.419547.602solanum_lycopersicumSolyc04g076910.3.162.733847.8417
g12900arabidopsis_hallerig12900.t113.17119.80673sesamum_indicumSIN_1011316.t72.440953.937
g12900arabidopsis_hallerig12900.t162.992147.3873helianthus_annuusmRNA:HanXRQr2_Chr02g006879167.073250.4573
g12900arabidopsis_hallerig12900.t152.612738.0816lolium_perennecds.KYUSt_chr3.2796359.178742.8341
g12900arabidopsis_hallerig12900.t152.899138.4395avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0002155.155.773640.5283
g12900arabidopsis_hallerig12900.t153.471738.7974avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0001921.158.313842.3107
g12900arabidopsis_hallerig12900.t153.614938.869avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0001477.458.469942.3888
g12900arabidopsis_hallerig12900.t153.614938.869avena_sativa_sangAVESA.00010b.r2.3DG0544840.1.CDS58.469942.3888
g12900arabidopsis_hallerig12900.t152.541238.0816avena_sativa_sangAVESA.00010b.r2.3CG0497680.1.CDS58.861342.6624
g12900arabidopsis_hallerig12900.t153.543338.869avena_sativa_sangAVESA.00010b.r2.3AG0444290.1.CDS58.391942.3888
g12900arabidopsis_hallerig12900.t151.324337.5089oryza_longistaminataKN539841.1_FGP00556.235341.098
g12900arabidopsis_hallerig12900.t152.469637.7953oryza_rufipogonORUFI01G30470.158.082441.8384
g12900arabidopsis_hallerig12900.t153.328638.1532oryza_brachyanthaOB01G36590.160.323943.1579
g12900arabidopsis_hallerig12900.t149.176835.6478oryza_punctataOPUNC01G27350.157.154741.431
g12900arabidopsis_hallerig12900.t154.259139.3701oryza_glaberrimaORGLA01G0226200.158.668742.5697
g12900arabidopsis_hallerig12900.t154.330738.5827secale_cerealeSECCE3Rv1G0185720.158.746141.7183
g12900arabidopsis_hallerig12900.t154.974938.5111setaria_viridisTKW1620259.442741.6409
g12900arabidopsis_hallerig12900.t153.471736.7215sorghum_bicolorOQU8737858.818940.3937
g12900arabidopsis_hallerig12900.t154.044437.4374sorghum_bicolorKXG3107059.778341.4093
g12900arabidopsis_hallerig12900.t154.974938.5827setaria_italicaKQL0655159.442741.7183
g12900arabidopsis_hallerig12900.t154.044438.7258triticum_aestivumTraesCS3B02G292200.158.391341.8407
g12900arabidopsis_hallerig12900.t154.044438.7974triticum_aestivumTraesCS3D02G259300.158.391341.918
g12900arabidopsis_hallerig12900.t153.758138.5111triticum_aestivumTraesCS3A02G259200.158.307541.7702
g12900arabidopsis_hallerig12900.t153.829637.5089zea_maysZm00001eb155980_P00458.069540.4633
g12900arabidopsis_hallerig12900.t155.690840.8733ananas_comosusAco018326.1.mrna162.540245.9003
g12900arabidopsis_hallerig12900.t110.52258.80458asparagus_officinalisONK6250566.515855.6561
g12900arabidopsis_hallerig12900.t114.8899.23407asparagus_officinalisONK6777756.216234.8649
g12900arabidopsis_hallerig12900.t137.437428.2749asparagus_officinalisONK6777662.559847.2488
g12900arabidopsis_hallerig12900.t152.469638.6543asparagus_officinalisONK6228960.428744.5177
g12900arabidopsis_hallerig12900.t154.044438.7258triticum_turgidumTRITD3Bv1G153890.658.391341.8407
g12900arabidopsis_hallerig12900.t153.758138.5111triticum_turgidumTRITD3Av1G173120.958.307541.7702
g12900arabidopsis_hallerig12900.t128.489614.6027caenorhabditis_elegansF25G6.2.134.820617.8478
g12900arabidopsis_hallerig12900.t132.35517.7523drosophila_melanogasterFBpp007837238.798321.2876
g12900arabidopsis_hallerig12900.t162.133146.743amborella_trichopodaERN1417561.256246.0833
g12900arabidopsis_hallerig12900.t152.541240.587corylus_avellanaCav06g16780.t164.726650
g12900arabidopsis_hallerig12900.t113.672210.8805corylus_avellanaCav06g16770.t179.253163.0705
g12900arabidopsis_hallerig12900.t168.718754.116gossypium_raimondiiKJB1468871.53556.3338
g12900arabidopsis_hallerig12900.t153.543338.7258brachypodium_distachyonKQK0930459.506843.039
g12900arabidopsis_hallerig12900.t110.09317.65927brachypodium_distachyonKQJ9273265.887850
g12900arabidopsis_hallerig12900.t134.788819.6135homo_sapiensENSP0000024593438.147621.5071
g12900arabidopsis_hallerig12900.t164.065949.0336fraxinus_excelsiorFRAEX38873_v2_000213670.1.cds68.060852.0913
g12900arabidopsis_hallerig12900.t113.099511.3099fraxinus_excelsiorFRAEX38873_v2_000230380.2.cds83.561672.1461
g12900arabidopsis_hallerig12900.t145.740932.1403fraxinus_excelsiorFRAEX38873_v2_000035700.1.cds55.954539.317
g12900arabidopsis_hallerig12900.t151.252737.2942oryza_glumipatulaOGLUM01G31350.156.156940.8627
g12900arabidopsis_hallerig12900.t154.831838.6543eragrostis_curvulaTVU3544259.196341.7311
g12900arabidopsis_hallerig12900.t151.037936.9363oryza_indicaBGIOSGA000977-PA57.779641.8152
g12900arabidopsis_hallerig12900.t168.289253.3286vitis_viniferaVitvi18g00576_P00171.460755.8052
g12900arabidopsis_hallerig12900.t152.827540.0143coffea_canephoraCDP0096363.951548.4402
g12900arabidopsis_hallerig12900.t113.31429.80673coffea_canephoraCDP0096270.992452.2901
g12900arabidopsis_hallerig12900.t153.328640.3722ipomoea_trilobaitb08g05980.t166.458550.3122
g12900arabidopsis_hallerig12900.t113.17119.37724ipomoea_trilobaitb08g05990.t173.652.4
g12900arabidopsis_hallerig12900.t153.829638.5827triticum_urartuTuG1812G0300003050.01.T0158.385141.8478
g12900arabidopsis_hallerig12900.t153.686538.5827oryza_meridionalisOMERI01G25210.156.732240.7716
g12900arabidopsis_hallerig12900.t163.421649.1052prunus_aviumPav_sc0002327.1_g680.1.mk:mrna65.824750.9658
g12900arabidopsis_hallerig12900.t16.72875.44023oryza_sativaOs01t0694300-0166.666753.9007
g12900arabidopsis_hallerig12900.t170.007255.4044pistacia_veracds-EVM0026581.172.767957.5893
g12900arabidopsis_hallerig12900.t169.577754.4739quercus_subercds-POE81927.151.729640.5003
g12900arabidopsis_hallerig12900.t134.07317.3228galdieria_sulphurariaEME2648240.067320.3704
g12900arabidopsis_hallerig12900.t130.279217.0365ciona_savignyiENSCSAVP0000000867941.268323.2195
g12900arabidopsis_hallerig12900.t159.699444.9535chenopodium_quinoaAUR62041883-RA:cds65.207249.1009
g12900arabidopsis_hallerig12900.t15.297074.08017dioscorea_rotundataDRNTG_34174.166.666751.3514
g12900arabidopsis_hallerig12900.t156.406640.3006dioscorea_rotundataDRNTG_24970.160.990743.5759
g12900arabidopsis_hallerig12900.t151.252740.0859citrus_clementinaESR4695765.748451.4233
g12900arabidopsis_hallerig12900.t113.743711.3815citrus_clementinaESR4696377.419464.1129
g12900arabidopsis_hallerig12900.t167.788153.6149juglans_regiacds.Jr15_11640_p171.796856.7854
g12900arabidopsis_hallerig12900.t113.457410.451juglans_regiacds.Jr15_11620_p177.68660.3306
g12900arabidopsis_hallerig12900.t168.503954.1875juglans_regiacds.Jr15_11650_p172.335657.2184
g12900arabidopsis_hallerig12900.t168.503954.1875juglans_regiacds.Jr15_11630_p172.28157.1752
g12900arabidopsis_hallerig12900.t133.142419.184ostreococcus_lucimarinusABO9652741.976424.2974
g12900arabidopsis_hallerig12900.t166.284952.8991actinidia_chinensisPSS1732369.571755.5222
g12900arabidopsis_hallerig12900.t166.070252.6843actinidia_chinensisPSS1968769.398555.3383
g12900arabidopsis_hallerig12900.t152.326437.3658leersia_perrieriLPERR01G23540.157.649841.1672
g12900arabidopsis_hallerig12900.t154.044438.869aegilops_tauschiiAET3Gv20629000.858.391341.9954
g12900arabidopsis_hallerig12900.t133.858321.6893musa_acuminataMa08_p32270.153.7534.4318
g12900arabidopsis_hallerig12900.t123.478919.6135musa_acuminataMa08_p32260.173.707961.573
g12900arabidopsis_hallerig12900.t154.044438.2248panicum_halliiPUZ5523358.301241.2355
g12900arabidopsis_hallerig12900.t187.043782.7487arabis_alpinaKFK2811091.912387.3772
g12900arabidopsis_hallerig12900.t169.86454.9034quercus_lobataQL12p040240:mrna67.824953.3009
g12900arabidopsis_hallerig12900.t189.04884.753eutrema_salsugineumESQ3410293.81689.2911
g12900arabidopsis_hallerig12900.t164.280648.8905kalanchoe_fedtschenkoiKaladp0067s0229.1.v1.167.671451.4695
g12900arabidopsis_hallerig12900.t153.972839.2985hordeum_vulgareHORVU.MOREX.r3.3HG0282120.158.31442.4594
g12900arabidopsis_hallerig12900.t167.64553.1138rosa_chinensisPRQ2086070.786555.5805
g12900arabidopsis_hallerig12900.t151.181137.0079oryza_barthiiOBART01G27440.157.847941.8285
g12900arabidopsis_hallerig12900.t147.816731.0666chara_brauniiGBG6414120.156913.096
g12900arabidopsis_hallerig12900.t165.497550.68corymbia_citriodoracds-KAF8024714.168.745353.1931
g12900arabidopsis_hallerig12900.t184.824680.3865brassica_rapa_ro18A09p049860.1_BraROA.191.013886.2519
g12900arabidopsis_hallerig12900.t183.965679.0265brassica_rapa_ro18A08p034490.1_BraROA.187.733782.5729
g12900arabidopsis_hallerig12900.t164.137448.7473olea_europaeaOE9A075668C468.344851.9451
g12900arabidopsis_hallerig12900.t164.20949.1768olea_europaeaOE9A096563C366.592451.0022
g12900arabidopsis_hallerig12900.t148.962138.3679eucalyptus_grandisKCW6856166.731752.2927
g12900arabidopsis_hallerig12900.t132.426616.3923cyanidioschyzon_merolaeCMF174CT33.505916.9379
g12900arabidopsis_hallerig12900.t159.699456.6213camelina_sativaCsa14g035160.176.654472.7022
g12900arabidopsis_hallerig12900.t164.996461.7037camelina_sativaCsa03g030830.167.913264.4727
g12900arabidopsis_hallerig12900.t153.25750.9664camelina_sativaCsa17g037340.190.842586.9353
g12900arabidopsis_hallerig12900.t164.566948.2462daucus_carotaKZM9609265.887549.233
g12900arabidopsis_hallerig12900.t150.6835.5762digitaria_exilisDexi5B01G0024370.1:cds57.607840.4394
g12900arabidopsis_hallerig12900.t150.6835.791digitaria_exilisDexi5A01G0024130.1:cds57.607840.6835
g12900arabidopsis_hallerig12900.t14.652833.43593eragrostis_tefEt_10A_000303.CDS53.71939.6694
g12900arabidopsis_hallerig12900.t154.903439.0122eragrostis_tefEt_3B_029114.CDS59.875142.5449
g12900arabidopsis_hallerig12900.t152.970637.7237eragrostis_tefEt_3A_024727.CDS53.896638.3831
g12900arabidopsis_hallerig12900.t153.829638.5827triticum_dicoccoidesTRIDC3AG038760.258.385141.8478
g12900arabidopsis_hallerig12900.t153.328638.4395triticum_dicoccoidesTRIDC3BG043880.359.409942.823
g12900arabidopsis_hallerig12900.t188.833288.5469arabidopsis_lyratafgenesh1_pm.C_scaffold_100226096.201695.8915
g12900arabidopsis_hallerig12900.t110.23628.51825saccharum_spontaneumSspon.03G0008450-1A-mRNA-1:cds79.444466.1111
g12900arabidopsis_hallerig12900.t119.18414.9606saccharum_spontaneumSspon.03G0008420-2C-mRNA-169.250654.0052
g12900arabidopsis_hallerig12900.t113.24279.37724saccharum_spontaneumSspon.03G0008450-2C-mRNA-160.457542.8105
g12900arabidopsis_hallerig12900.t135.289925.4832saccharum_spontaneumSspon.03G0008430-1A-mRNA-1:cds59.613143.0472
g12900arabidopsis_hallerig12900.t115.31859.44882saccharum_spontaneumSspon.03G0008410-1A-mRNA-1:cds55.584434.2857
g12900arabidopsis_hallerig12900.t153.400140.2291nymphaea_colorataNC14G0014570.1:cds62.794647.3064
g12900arabidopsis_hallerig12900.t154.760237.7953echinochloa_crusgalliscaffold113.60.cds59.164740.8353
g12900arabidopsis_hallerig12900.t154.688637.9384echinochloa_crusgalliscaffold15.275.cds57.400539.8197
g12900arabidopsis_hallerig12900.t153.543337.151echinochloa_crusgalliscaffold334.21.cds59.31841.1578
g12900arabidopsis_hallerig12900.t185.254180.7445brassica_oleraceaBo5g052130.187.252782.6374
g12900arabidopsis_hallerig12900.t183.679378.7402brassica_oleraceaBo3g141660.185.204180.1749
g12900arabidopsis_hallerig12900.t168.432453.3286corchorus_capsularisOMO5085673.595157.3518
g12900arabidopsis_hallerig12900.t151.252737.3658oryza_nivaraONIVA01G31380.156.156940.9412
g12900arabidopsis_hallerig12900.t124.982120.8304trifolium_pratenseTp57577_TGAC_v2_mRNA1365779.862766.5904
g12900arabidopsis_hallerig12900.t141.159627.4875trifolium_pratenseTp57577_TGAC_v2_mRNA1272453.588135.7875
g12900arabidopsis_hallerig12900.t162.133146.743cynara_cardunculusKVH9882065.361449.1717

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression