Description

Ensembl ID g12651 Gene ID Accession -
Symbol Alias - Full Name Pre-mRNA-splicing factor 38
Status Confidence Length 2415 bases Strand Minus strand
Position FJVB01000032.1 : 1095940 - 1098354 RNA binding domain PRP38
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g12651 PRP38 PF03371 2.8e-59 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g12651.t1 1563 399aa g12651.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12651arabidopsis_hallerig28433.t134.673422.3618arabidopsis_hallerig12651.t134.586522.3058

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12651arabidopsis_hallerig12651.t120.551414.0351chondrus_crispusCDF3532740.79627.8607
g12651arabidopsis_hallerig12651.t128.571420.3008chondrus_crispusCDF3531961.290343.5484
g12651arabidopsis_hallerig12651.t120.551414.0351chondrus_crispusCDF3532340.79627.8607
g12651arabidopsis_hallerig12651.t166.41651.1278chlamydomonas_reinhardtiiPNW7494256.745243.6831
g12651arabidopsis_hallerig12651.t177.694269.9248papaver_somniferumRZC5318180.729272.6562
g12651arabidopsis_hallerig12651.t162.155455.3885cannabis_sativa_femalecds.evm.model.06.190074.924566.7674
g12651arabidopsis_hallerig12651.t173.934862.406physcomitrium_patensPp3c1_35390V3.367.660657.1101
g12651arabidopsis_hallerig12651.t172.180564.1604ficus_caricaFCD_00008437-RA:cds7566.6667
g12651arabidopsis_hallerig12651.t177.443669.1729beta_vulgarisKMT1427181.74673.0159
g12651arabidopsis_hallerig12651.t177.694269.4236citrullus_lanatusCla97C02G040950.176.923168.7345
g12651arabidopsis_hallerig12651.t155.639149.3734cucumis_sativusKGN6097587.058877.2549
g12651arabidopsis_hallerig12651.t177.694268.1704theobroma_cacaoEOY2604681.578971.5789
g12651arabidopsis_hallerig12651.t187.719385.4637arabidopsis_thalianaAT2G40650.198.591696.0563
g12651arabidopsis_hallerig12651.t177.944969.6742cucumis_meloMELO3C004206.2.178.337570.0252
g12651arabidopsis_hallerig12651.t179.699269.9248populus_trichocarpaPotri.013G012000.1.v4.184.874.4
g12651arabidopsis_hallerig12651.t186.466283.208brassica_junceacds.BjuA03g38580S98.571494.8571
g12651arabidopsis_hallerig12651.t185.714382.9574brassica_junceacds.BjuB08g40670S98.275995.1149
g12651arabidopsis_hallerig12651.t184.962477.6942brassica_napusCDX9316482.481875.4258
g12651arabidopsis_hallerig12651.t186.466282.7068brassica_napusCDY6915698.571494.2857
g12651arabidopsis_hallerig12651.t185.964981.7043brassica_napusCDY224689893.1429
g12651arabidopsis_hallerig12651.t177.944969.4236malus_domestica_goldenmRNA:MD12G017520083.155174.0642
g12651arabidopsis_hallerig12651.t177.694269.4236malus_domestica_goldenmRNA:MD04G016030081.578972.8947
g12651arabidopsis_hallerig12651.t171.177961.4035marchantia_polymorphaPTQ2958667.298658.0569
g12651arabidopsis_hallerig12651.t159.649152.1303prunus_dulcisVVA2635078.547968.6469
g12651arabidopsis_hallerig12651.t176.942468.6717prunus_dulcisVVA1323281.432472.679
g12651arabidopsis_hallerig12651.t152.38143.3584prunus_persicaONI0435870.370458.2492
g12651arabidopsis_hallerig12651.t176.942468.6717prunus_persicaONI3019672.065764.3193
g12651arabidopsis_hallerig12651.t178.947469.6742cajanus_cajanC.cajan_06861.t80.562771.0997
g12651arabidopsis_hallerig12651.t178.696769.9248glycine_maxKRG9293481.984372.846
g12651arabidopsis_hallerig12651.t178.446168.9223glycine_maxKRH3386082.152272.1785
g12651arabidopsis_hallerig12651.t178.947469.9248lupinus_angustifoliusOIW0710082.031272.6562
g12651arabidopsis_hallerig12651.t177.694269.6742medicago_truncatulaAES6143980.519572.2078
g12651arabidopsis_hallerig12651.t177.443667.4185phaseolus_vulgarisESW1697381.315870.7895
g12651arabidopsis_hallerig12651.t178.195570.1754pisum_sativumPsat6g151720.1.cds8071.7949
g12651arabidopsis_hallerig12651.t171.929861.4035vigna_radiataVradi08g12190.181.534169.6023
g12651arabidopsis_hallerig12651.t178.696769.4236vigna_unguiculataVigun07g142400.1.v1.280.927871.3918
g12651arabidopsis_hallerig12651.t178.195569.4236vigna_angularisKOM3548980.412471.3918
g12651arabidopsis_hallerig12651.t179.448671.1779manihot_esculentaOAY2230083.862475.1323
g12651arabidopsis_hallerig12651.t178.947469.9248capsicum_annuumPHT6247081.185671.9072
g12651arabidopsis_hallerig12651.t178.195568.9223solanum_tuberosumPGSC0003DMT40006360482.758672.9443
g12651arabidopsis_hallerig12651.t142.606536.8421solanum_lycopersicumSolyc01g100060.3.185.427173.8693
g12651arabidopsis_hallerig12651.t173.433663.4085sesamum_indicumSIN_1025876.t76.501366.0574
g12651arabidopsis_hallerig12651.t180.200569.4236sesamum_indicumSIN_1022730.t82.474271.3918
g12651arabidopsis_hallerig12651.t176.691766.9173helianthus_annuusmRNA:HanXRQr2_Chr11g048949180.104769.8953
g12651arabidopsis_hallerig12651.t173.433663.1579lactuca_sativacds-PLY63971.177.925567.0213
g12651arabidopsis_hallerig12651.t172.932361.9048lolium_perennecds.KYUSt_chr5.1725074.424663.1714
g12651arabidopsis_hallerig12651.t173.433662.9073avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0001585.474.744964.0306
g12651arabidopsis_hallerig12651.t173.433662.6566avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0002014.173.2562.5
g12651arabidopsis_hallerig12651.t173.433662.406avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001573.475.128263.8462
g12651arabidopsis_hallerig12651.t161.904849.3734oryza_longistaminataKN539475.1_FGP00562.849950.1272
g12651arabidopsis_hallerig12651.t158.145446.1153oryza_rufipogonORUFI09G00200.163.215350.1362
g12651arabidopsis_hallerig12651.t174.185564.6617oryza_brachyanthaOB09G10100.175.897466.1538
g12651arabidopsis_hallerig12651.t172.932362.6566oryza_punctataOPUNC09G00120.175.584464.9351
g12651arabidopsis_hallerig12651.t173.433663.1579oryza_glaberrimaORGLA09G0001500.174.744964.2857
g12651arabidopsis_hallerig12651.t173.684263.4085secale_cerealeSECCE5Rv1G0320750.175.384664.8718
g12651arabidopsis_hallerig12651.t174.185563.6591setaria_viridisTKW3840276.288765.4639
g12651arabidopsis_hallerig12651.t156.641646.8672setaria_viridisTKW3206171.974559.5541
g12651arabidopsis_hallerig12651.t174.686764.6617sorghum_bicolorEER9854776.020465.8163
g12651arabidopsis_hallerig12651.t156.39146.6165setaria_italicaKQL2368571.656159.2357
g12651arabidopsis_hallerig12651.t174.686763.9098setaria_italicaKQL2903474.874464.0704
g12651arabidopsis_hallerig12651.t172.431162.9073triticum_aestivumTraesCS5D02G164200.173.724564.0306
g12651arabidopsis_hallerig12651.t173.18362.9073triticum_aestivumTraesCS5A02G159100.174.111763.7056
g12651arabidopsis_hallerig12651.t131.328324.0602triticum_aestivumTraesCS1D02G290400.1.cds157.339544.0367
g12651arabidopsis_hallerig12651.t173.18363.1579triticum_aestivumTraesCS5B02G156900.174.300364.1221
g12651arabidopsis_hallerig12651.t133.333325.0627triticum_aestivumTraesCS1B02G301300.1.cds162.441346.9484
g12651arabidopsis_hallerig12651.t132.832124.5614triticum_aestivumTraesCS1A02G291900.1.cds164.53248.2759
g12651arabidopsis_hallerig12651.t173.433663.1579zea_maysZm00001eb095730_P00175.321364.7815
g12651arabidopsis_hallerig12651.t175.18864.411ananas_comosusAco001830.1.mrna178.53467.2775
g12651arabidopsis_hallerig12651.t174.185566.1654asparagus_officinalisONK6338177.894769.4737
g12651arabidopsis_hallerig12651.t173.18363.1579triticum_turgidumTRITD5Bv1G098300.274.300364.1221
g12651arabidopsis_hallerig12651.t173.18362.9073triticum_turgidumTRITD5Av1G118410.372.81862.5935
g12651arabidopsis_hallerig12651.t133.333325.0627triticum_turgidumTRITD1Bv1G165640.162.441346.9484
g12651arabidopsis_hallerig12651.t149.874737.8446caenorhabditis_elegansD1054.14.162.187547.1875
g12651arabidopsis_hallerig12651.t152.130338.3459drosophila_melanogasterFBpp008766363.030346.3636
g12651arabidopsis_hallerig12651.t114.78712.782amborella_trichopodaERM9674784.285772.8571
g12651arabidopsis_hallerig12651.t114.78712.782amborella_trichopodaERM9753484.285772.8571
g12651arabidopsis_hallerig12651.t181.20371.9298corylus_avellanaCav02g05510.t150.783744.9843
g12651arabidopsis_hallerig12651.t176.691767.4185gossypium_raimondiiKJB7141681.167171.3528
g12651arabidopsis_hallerig12651.t173.433663.4085brachypodium_distachyonKQJ8687374.744964.5408
g12651arabidopsis_hallerig12651.t149.122839.3484homo_sapiensENSP0000025718162.820550.3205
g12651arabidopsis_hallerig12651.t174.185563.9098fraxinus_excelsiorFRAEX38873_v2_000067920.1.cds78.933368
g12651arabidopsis_hallerig12651.t168.170458.6466fraxinus_excelsiorFRAEX38873_v2_000041620.1.cds81.19469.8507
g12651arabidopsis_hallerig12651.t158.145446.1153oryza_glumipatulaOGLUM09G00180.163.215350.1362
g12651arabidopsis_hallerig12651.t174.686764.1604eragrostis_curvulaTVU1072176.020465.3061
g12651arabidopsis_hallerig12651.t173.684263.4085oryza_indicaBGIOSGA030250-PA7564.5408
g12651arabidopsis_hallerig12651.t160.40150.6266vitis_viniferaVitvi00g04383_P00168.079157.0621
g12651arabidopsis_hallerig12651.t177.694267.4185nicotiana_attenuataOIS9985981.151870.4188
g12651arabidopsis_hallerig12651.t180.200570.4261coffea_canephoraCDP172248070.25
g12651arabidopsis_hallerig12651.t178.195568.4211ipomoea_trilobaitb07g00530.t18070
g12651arabidopsis_hallerig12651.t161.904849.8747oryza_meridionalisOMERI09G00190.139.206331.5873
g12651arabidopsis_hallerig12651.t123.809521.0526prunus_aviumPav_sc0001508.1_g100.1.br:CDS:197.938186.5979
g12651arabidopsis_hallerig12651.t124.060221.5539prunus_aviumPav_sc0004194.1_g010.1.mk:CDS:198.969188.6598
g12651arabidopsis_hallerig12651.t173.684263.4085oryza_sativaOs09t0103600-017564.5408
g12651arabidopsis_hallerig12651.t146.616532.5815galdieria_sulphurariaEME2680366.906546.7626
g12651arabidopsis_hallerig12651.t149.122835.3383ciona_savignyiENSCSAVP0000001628064.900746.6887
g12651arabidopsis_hallerig12651.t155.889749.8747chenopodium_quinoaAUR62000721-RA:cds80.215871.5827
g12651arabidopsis_hallerig12651.t169.674259.3985dioscorea_rotundataDRNTG_12602.172.395861.7188
g12651arabidopsis_hallerig12651.t169.674260.1504dioscorea_rotundataDRNTG_12463.176.58466.1157
g12651arabidopsis_hallerig12651.t177.694269.6742citrus_clementinaESR4672581.151872.7749
g12651arabidopsis_hallerig12651.t180.200571.6792juglans_regiacds.Jr11_03730_p179.60271.1443
g12651arabidopsis_hallerig12651.t154.135342.6065ostreococcus_lucimarinusABO9386359.016446.4481
g12651arabidopsis_hallerig12651.t144.862238.3459actinidia_chinensisPSS0305089.054776.1194
g12651arabidopsis_hallerig12651.t173.433663.6591leersia_perrieriLPERR09G00960.275.515565.4639
g12651arabidopsis_hallerig12651.t172.431162.9073aegilops_tauschiiAET5Gv20402600.172.79663.2242
g12651arabidopsis_hallerig12651.t178.195567.6692musa_acuminataMa03_p20950.179.389368.7023
g12651arabidopsis_hallerig12651.t137.092732.5815selaginella_moellendorffiiEFJ0947088.095277.381
g12651arabidopsis_hallerig12651.t148.621641.1028selaginella_moellendorffiiEFJ3588766.211655.9727
g12651arabidopsis_hallerig12651.t175.438665.4135panicum_halliiPUZ6972777.377967.0951
g12651arabidopsis_hallerig12651.t187.21884.2105arabis_alpinaKFK3693697.752894.382
g12651arabidopsis_hallerig12651.t179.949972.1805quercus_lobataQL03p018920:mrna80.150872.3618
g12651arabidopsis_hallerig12651.t174.436165.9148kalanchoe_fedtschenkoiKaladp0057s0134.1.v1.179.270.1333
g12651arabidopsis_hallerig12651.t174.185563.4085hordeum_vulgareHORVU.MOREX.r3.5HG0467490.174.559263.728
g12651arabidopsis_hallerig12651.t179.448670.4261rosa_chinensisPRQ4233681.912172.6098
g12651arabidopsis_hallerig12651.t161.152949.1228oryza_barthiiOBART09G00170.163.707651.1749
g12651arabidopsis_hallerig12651.t167.919856.6416chara_brauniiGBG7856855.532846.3115
g12651arabidopsis_hallerig12651.t179.699272.6817corymbia_citriodoracds-KAF8015964.178.518571.6049
g12651arabidopsis_hallerig12651.t186.716882.7068brassica_rapa_ro18A03p023550.1_BraROA.198.295593.75
g12651arabidopsis_hallerig12651.t177.944966.9173olea_europaeaOE9A053395C182.493470.8223
g12651arabidopsis_hallerig12651.t179.448671.6792eucalyptus_grandisKCW6052972.706465.5963
g12651arabidopsis_hallerig12651.t187.719384.4612camelina_sativaCsa05g012050.196.952993.3518
g12651arabidopsis_hallerig12651.t186.466283.4586camelina_sativaCsa06g045080.196.368793.0168
g12651arabidopsis_hallerig12651.t184.210581.203camelina_sativaCsa04g055020.195.454592.0455
g12651arabidopsis_hallerig12651.t178.195567.1679daucus_carotaKZN1184779.591868.3673
g12651arabidopsis_hallerig12651.t175.18865.1629digitaria_exilisDexi2B01G0012010.1:cds75.949465.8228
g12651arabidopsis_hallerig12651.t174.937365.1629digitaria_exilisDexi2A01G0012820.1:cds75.696265.8228
g12651arabidopsis_hallerig12651.t174.185564.1604eragrostis_tefEt_2B_019756.CDS60.285152.1385
g12651arabidopsis_hallerig12651.t155.639147.3684eragrostis_tefEt_2A_015636.CDS77.622466.0839
g12651arabidopsis_hallerig12651.t173.18363.1579triticum_dicoccoidesTRIDC5BG027530.273.92463.7975
g12651arabidopsis_hallerig12651.t173.18362.9073triticum_dicoccoidesTRIDC5AG026320.174.111763.7056
g12651arabidopsis_hallerig12651.t188.972487.7193arabidopsis_lyratafgenesh2_kg.4__2184__AT2G40650.110098.5916
g12651arabidopsis_hallerig12651.t170.676762.9073nymphaea_colorataNC10G0043770.1:cds74.603266.4021
g12651arabidopsis_hallerig12651.t174.937364.6617echinochloa_crusgalliscaffold102.116.cds76.081465.6489
g12651arabidopsis_hallerig12651.t175.18864.9123echinochloa_crusgalliscaffold121.237.cds75.949465.5696
g12651arabidopsis_hallerig12651.t175.18864.9123echinochloa_crusgalliscaffold3.256.cds76.335965.9033
g12651arabidopsis_hallerig12651.t183.458677.4436brassica_oleraceaBo4g190350.195.415588.5387
g12651arabidopsis_hallerig12651.t186.215581.9549brassica_oleraceaBo3g035100.198.285793.4286
g12651arabidopsis_hallerig12651.t166.165458.6466corchorus_capsularisOMO5535483.280873.817
g12651arabidopsis_hallerig12651.t161.152949.3734oryza_nivaraONIVA09G00120.264.210551.8421
g12651arabidopsis_hallerig12651.t161.904855.3885trifolium_pratenseTp57577_TGAC_v2_mRNA1834873.076965.3846
g12651arabidopsis_hallerig12651.t178.446165.4135cynara_cardunculusKVI1100481.723268.1462

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression