RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	g12511	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2380 bases	Strand	Plus strand
Position	FJVB01000032.1 : 359850 - 362229	RNA binding domain	Nup35_RRM_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
g12511	Nup35_RRM_2	PF14605	1.9e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	g12511.t1	1467	388aa	g12511.t1

Gene Model

Click here to download g12511's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download g12511's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g12511

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
g12511	arabidopsis_halleri	g12511.t1	16.7526	13.9175	camelina_sativa	Csa08g041670.1	74.7126	62.069
g12511	arabidopsis_halleri	g12511.t1	28.6082	21.3918	camelina_sativa	Csa01g015260.1	49.115	36.7257
g12511	arabidopsis_halleri	g12511.t1	38.4021	28.3505	camelina_sativa	Csa19g019210.1	46.13	34.0557
g12511	arabidopsis_halleri	g12511.t1	21.6495	21.134	arabidopsis_lyrata	scaffold_402702.1	91.3043	89.1304

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression