Description

Ensembl ID g12153 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 2073 bases Strand Plus strand
Position FJVB01000030.1 : 1207477 - 1209549 RNA binding domain Pept_tRNA_hydro
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g12153 Pept_tRNA_hydro PF01195 2.6e-56 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g12153.t1 933 218aa g12153.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12153arabidopsis_hallerig20806.t160.580948.9627arabidopsis_hallerig12153.t166.972554.1284
g12153arabidopsis_hallerig14010.t149.319733.6735arabidopsis_hallerig12153.t166.513845.4128

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g12153arabidopsis_hallerig12153.t155.963338.0734chlamydomonas_reinhardtiiPNW8619344.688630.4029
g12153arabidopsis_hallerig12153.t165.596346.3303physcomitrium_patensPp3c13_17350V3.149.310334.8276
g12153arabidopsis_hallerig12153.t165.596342.2018physcomitrium_patensPp3c4_11200V3.152.96334.0741
g12153arabidopsis_hallerig12153.t135.321129.3578ficus_caricaFCD_00028717-RA:cds72.641560.3774
g12153arabidopsis_hallerig12153.t180.733969.7248beta_vulgarisKMT1431577.876167.2566
g12153arabidopsis_hallerig12153.t183.027572.9358citrullus_lanatusCla97C03G064680.179.38669.7368
g12153arabidopsis_hallerig12153.t183.94573.3945cucumis_sativusKGN6638083.94573.3945
g12153arabidopsis_hallerig12153.t173.853264.6789cucumis_sativusKGN6636676.303366.8246
g12153arabidopsis_hallerig12153.t183.94574.7706theobroma_cacaoEOY0890269.581761.9772
g12153arabidopsis_hallerig12153.t198.623996.3303arabidopsis_thalianaAT5G19830.198.173595.8904
g12153arabidopsis_hallerig12153.t182.568871.1009cucumis_meloMELO3C015585.2.178.260967.3913
g12153arabidopsis_hallerig12153.t183.486272.9358cucumis_meloMELO3C015598.2.176.150666.5272
g12153arabidopsis_hallerig12153.t183.94572.0183populus_trichocarpaPotri.001G005000.1.v4.182.432470.7207
g12153arabidopsis_hallerig12153.t194.954190.8257brassica_junceacds.BjuB05g22810S94.090990
g12153arabidopsis_hallerig12153.t195.871692.2018brassica_junceacds.BjuA01g22840S9591.3636
g12153arabidopsis_hallerig12153.t192.660687.6147brassica_napusCDY6611846.867744.3155
g12153arabidopsis_hallerig12153.t194.036789.4495brassica_napusCDX8306462.3159.2705
g12153arabidopsis_hallerig12153.t180.275274.3119malus_domestica_goldenmRNA:MD03G000400077.433671.6814
g12153arabidopsis_hallerig12153.t167.431249.5413marchantia_polymorphaPTQ4969652.877738.8489
g12153arabidopsis_hallerig12153.t182.568872.9358prunus_dulcisVVA2322582.191872.6027
g12153arabidopsis_hallerig12153.t182.568872.9358prunus_persicaONH9900982.191872.6027
g12153arabidopsis_hallerig12153.t182.568872.0183cajanus_cajanC.cajan_27631.t82.949372.3502
g12153arabidopsis_hallerig12153.t183.94573.3945glycine_maxKRH4283583.94573.3945
g12153arabidopsis_hallerig12153.t183.486272.0183glycine_maxKRH5893383.87172.3502
g12153arabidopsis_hallerig12153.t182.568873.8532lupinus_angustifoliusOIW1922382.191873.516
g12153arabidopsis_hallerig12153.t180.733970.6422medicago_truncatulaAET0420680.733970.6422
g12153arabidopsis_hallerig12153.t184.403774.7706phaseolus_vulgarisESW3142284.792675.1152
g12153arabidopsis_hallerig12153.t183.027572.9358pisum_sativumPsat7g072560.1.cds83.027572.9358
g12153arabidopsis_hallerig12153.t168.348660.0917vigna_radiataVradi0161s00230.161.316953.9095
g12153arabidopsis_hallerig12153.t183.94574.7706vigna_unguiculataVigun03g100400.1.v1.284.331875.1152
g12153arabidopsis_hallerig12153.t182.110172.4771manihot_esculentaOAY5474883.255873.4884
g12153arabidopsis_hallerig12153.t176.146867.8899capsicum_annuumPHT9034575.454567.2727
g12153arabidopsis_hallerig12153.t177.981768.8073solanum_tuberosumPGSC0003DMT40006431177.272768.1818
g12153arabidopsis_hallerig12153.t178.440468.3486sesamum_indicumSIN_1010726.t65.769257.3077
g12153arabidopsis_hallerig12153.t180.275270.1835helianthus_annuusmRNA:HanXRQr2_Chr02g008341176.754467.1053
g12153arabidopsis_hallerig12153.t182.110171.5596lactuca_sativacds-PLY92226.182.110171.5596
g12153arabidopsis_hallerig12153.t134.403726.1468avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0000002.162.547.5
g12153arabidopsis_hallerig12153.t154.128442.6605avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0002986.849.579839.0756
g12153arabidopsis_hallerig12153.t138.073428.8991avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0000761.138.248829.0323
g12153arabidopsis_hallerig12153.t179.357866.055avena_sativa_sangAVESA.00010b.r2.5DG0937960.1.CDS72.995860.7595
g12153arabidopsis_hallerig12153.t154.128442.6605avena_sativa_sangAVESA.00010b.r2.4CG1316560.1.CDS49.579839.0756
g12153arabidopsis_hallerig12153.t178.899165.1376avena_sativa_sangAVESA.00010b.r2.5AG0808300.1.CDS72.573859.9156
g12153arabidopsis_hallerig12153.t178.899165.1376avena_sativa_sangAVESA.00010b.r2.4CG1252860.1.CDS72.573859.9156
g12153arabidopsis_hallerig12153.t179.357864.6789avena_sativa_sangAVESA.00010b.r2.6AG1071750.1.CDS72.995859.4937
g12153arabidopsis_hallerig12153.t167.431255.9633oryza_longistaminataKN540805.1_FGP00467.741956.2212
g12153arabidopsis_hallerig12153.t178.440465.1376oryza_rufipogonORUFI03G17860.160.42450.1767
g12153arabidopsis_hallerig12153.t179.357864.6789oryza_brachyanthaOB03G26840.172.995859.4937
g12153arabidopsis_hallerig12153.t179.357864.2202oryza_punctataOPUNC03G16610.268.924355.7769
g12153arabidopsis_hallerig12153.t178.440465.1376oryza_glaberrimaORGLA03G0164600.172.151959.9156
g12153arabidopsis_hallerig12153.t177.981763.7615secale_cerealeSECCE2Rv1G0135360.171.7358.6498
g12153arabidopsis_hallerig12153.t177.522962.844secale_cerealeSECCE2Rv1G0135610.172.844859.0517
g12153arabidopsis_hallerig12153.t179.357866.9725setaria_viridisTKW0932574.891863.2035
g12153arabidopsis_hallerig12153.t179.357866.055setaria_viridisTKV9612673.61761.2766
g12153arabidopsis_hallerig12153.t177.064264.2202sorghum_bicolorKXG3939170.292958.5774
g12153arabidopsis_hallerig12153.t149.082641.2844setaria_italicaKQK9090173.287761.6438
g12153arabidopsis_hallerig12153.t179.357866.5138setaria_italicaKQL0107174.891862.7706
g12153arabidopsis_hallerig12153.t178.440463.3028triticum_aestivumTraesCS2A02G547700.370.954457.2614
g12153arabidopsis_hallerig12153.t176.605562.3853triticum_aestivumTraesCS2D02G548800.270.464157.384
g12153arabidopsis_hallerig12153.t177.981763.7615triticum_aestivumTraesCS2D02G550300.173.275959.9138
g12153arabidopsis_hallerig12153.t176.605562.3853triticum_aestivumTraesCS2B02G578400.157.986147.2222
g12153arabidopsis_hallerig12153.t177.981764.2202triticum_aestivumTraesCS2A02G549000.273.275960.3448
g12153arabidopsis_hallerig12153.t177.522963.3028triticum_aestivumTraesCS2B02G580000.172.844859.4828
g12153arabidopsis_hallerig12153.t176.605564.6789zea_maysZm00001eb016720_P00169.874558.9958
g12153arabidopsis_hallerig12153.t177.064265.1376ananas_comosusAco000240.1.mrna173.684262.2807
g12153arabidopsis_hallerig12153.t176.605562.844triticum_turgidumTRITD2Bv1G252470.270.762758.0508
g12153arabidopsis_hallerig12153.t176.605562.3853triticum_turgidumTRITD2Bv1G251930.557.986147.2222
g12153arabidopsis_hallerig12153.t178.440463.3028triticum_turgidumTRITD2Av1G284330.670.954457.2614
g12153arabidopsis_hallerig12153.t177.981764.2202triticum_turgidumTRITD2Av1G284710.172.033959.322
g12153arabidopsis_hallerig12153.t177.981766.055amborella_trichopodaERN2043573.275962.069
g12153arabidopsis_hallerig12153.t148.623941.7431corylus_avellanaCav03g14720.t154.922347.1503
g12153arabidopsis_hallerig12153.t182.568873.8532gossypium_raimondiiKJB7009782.191873.516
g12153arabidopsis_hallerig12153.t177.064264.2202brachypodium_distachyonPNT6210970.292958.5774
g12153arabidopsis_hallerig12153.t136.697227.9817brachypodium_distachyonKQJ8521557.55443.8849
g12153arabidopsis_hallerig12153.t177.064262.844brachypodium_distachyonPNT7741869.135856.3786
g12153arabidopsis_hallerig12153.t141.284424.7706homo_sapiensENSP0000043946942.056125.2336
g12153arabidopsis_hallerig12153.t179.357871.1009fraxinus_excelsiorFRAEX38873_v2_000398570.2.cds78.995470.7763
g12153arabidopsis_hallerig12153.t178.440464.6789oryza_glumipatulaOGLUM03G17680.560.42449.8233
g12153arabidopsis_hallerig12153.t153.669744.0367oryza_glumipatulaOGLUM05G29700.262.23451.0638
g12153arabidopsis_hallerig12153.t161.926650.9174eragrostis_curvulaTVU4705369.587657.2165
g12153arabidopsis_hallerig12153.t137.614731.1927oryza_indicaBGIOSGA020490-PA65.654.4
g12153arabidopsis_hallerig12153.t178.440465.1376oryza_indicaBGIOSGA012610-PA62.408851.8248
g12153arabidopsis_hallerig12153.t181.192774.3119vitis_viniferaVitvi06g00058_P00181.566874.6544
g12153arabidopsis_hallerig12153.t180.733970.6422nicotiana_attenuataOIS9648981.10670.9677
g12153arabidopsis_hallerig12153.t157.339551.3761coffea_canephoraCDP1757979.113970.8861
g12153arabidopsis_hallerig12153.t165.137655.0459ipomoea_trilobaitb04g22640.t144.654137.7358
g12153arabidopsis_hallerig12153.t182.110171.1009ipomoea_trilobaitb04g20950.t182.488571.4286
g12153arabidopsis_hallerig12153.t178.440463.7615triticum_urartuTuG1812G0200005883.01.T0172.151958.6498
g12153arabidopsis_hallerig12153.t177.981764.2202triticum_urartuTuG1812G0200005909.01.T0272.961460.0858
g12153arabidopsis_hallerig12153.t149.082641.7431oryza_meridionalisOMERI03G15590.168.152957.9618
g12153arabidopsis_hallerig12153.t178.440465.5963oryza_meridionalisOMERI03G15390.172.151960.3376
g12153arabidopsis_hallerig12153.t174.311964.6789prunus_aviumPav_sc0000659.1_g100.1.mk:mrna72.645763.2287
g12153arabidopsis_hallerig12153.t160.550554.1284prunus_aviumPav_co4058183.1_g010.1.mk:mrna72.928265.1934
g12153arabidopsis_hallerig12153.t151.376141.7431oryza_sativaOs03t0347800-0160.215148.9247
g12153arabidopsis_hallerig12153.t166.05559.633pistacia_veracds-EVM0000764.281.355973.4463
g12153arabidopsis_hallerig12153.t181.651471.1009quercus_subercds-POE60468.173.25163.786
g12153arabidopsis_hallerig12153.t143.119327.9817galdieria_sulphurariaEME2814044.549828.91
g12153arabidopsis_hallerig12153.t167.431257.7982chenopodium_quinoaAUR62040911-RA:cds77.777866.6667
g12153arabidopsis_hallerig12153.t172.935858.2569dioscorea_rotundataDRNTG_05060.17559.9057
g12153arabidopsis_hallerig12153.t177.522965.1376dioscorea_rotundataDRNTG_06785.176.126163.964
g12153arabidopsis_hallerig12153.t182.110174.3119citrus_clementinaESR5884781.735273.9726
g12153arabidopsis_hallerig12153.t183.027574.3119juglans_regiacds.Jr14_21770_p183.410174.6544
g12153arabidopsis_hallerig12153.t156.42248.6239juglans_regiacds.Jr14_21760_p179.354868.3871
g12153arabidopsis_hallerig12153.t155.504634.4037ostreococcus_lucimarinusABO9415264.021239.6825
g12153arabidopsis_hallerig12153.t139.908326.1468saccharomyces_cerevisiaeYHR189W45.789530
g12153arabidopsis_hallerig12153.t179.357869.2661actinidia_chinensisPSR8690478.636468.6364
g12153arabidopsis_hallerig12153.t162.385352.7523actinidia_chinensisPSR9026378.160966.092
g12153arabidopsis_hallerig12153.t170.183555.9633leersia_perrieriLPERR03G15040.171.83157.277
g12153arabidopsis_hallerig12153.t177.064263.3028aegilops_tauschiiAET2Gv21202400.372.727359.7403
g12153arabidopsis_hallerig12153.t176.605562.3853aegilops_tauschiiAET2Gv21198200.969.294656.4315
g12153arabidopsis_hallerig12153.t178.440466.5138musa_acuminataMa03_p30800.276.339364.7321
g12153arabidopsis_hallerig12153.t157.339538.9908selaginella_moellendorffiiEFJ3388270.621548.0226
g12153arabidopsis_hallerig12153.t157.339538.9908selaginella_moellendorffiiEFJ3740070.621548.0226
g12153arabidopsis_hallerig12153.t179.816566.9725panicum_halliiPUZ4111073.109261.3445
g12153arabidopsis_hallerig12153.t183.027572.0183quercus_lobataQL01p008746:mrna83.410172.3502
g12153arabidopsis_hallerig12153.t195.412892.6606eutrema_salsugineumESQ4199595.412892.6606
g12153arabidopsis_hallerig12153.t180.733968.3486kalanchoe_fedtschenkoiKaladp0039s0161.1.v1.182.24369.6262
g12153arabidopsis_hallerig12153.t163.761553.6697hordeum_vulgareHORVU.MOREX.r3.2HG0211610.178.089965.7303
g12153arabidopsis_hallerig12153.t177.981763.7615hordeum_vulgareHORVU.MOREX.r3.2HG0211760.171.7358.6498
g12153arabidopsis_hallerig12153.t180.275272.0183rosa_chinensisPRQ3574081.775773.3645
g12153arabidopsis_hallerig12153.t178.440465.1376oryza_barthiiOBART03G17240.162.408851.8248
g12153arabidopsis_hallerig12153.t143.119333.4862oryza_barthiiOBART05G28270.259.493746.2025
g12153arabidopsis_hallerig12153.t161.467942.2018chara_brauniiGBG6990528.817219.7849
g12153arabidopsis_hallerig12153.t162.385343.578chara_brauniiGBG7985913.55939.47159
g12153arabidopsis_hallerig12153.t181.192774.7706corymbia_citriodoracds-KAF8034459.181.566875.1152
g12153arabidopsis_hallerig12153.t181.192774.7706corymbia_citriodoracds-KAF8034579.181.566875.1152
g12153arabidopsis_hallerig12153.t195.871692.6606brassica_rapa_ro18A01p027880.1_BraROA.19591.8182
g12153arabidopsis_hallerig12153.t179.357872.9358olea_europaeaOE9A066884C178.995472.6027
g12153arabidopsis_hallerig12153.t149.541345.8716eucalyptus_grandisKCW799988074.0741
g12153arabidopsis_hallerig12153.t183.027576.1468eucalyptus_grandisKCW8017583.410176.4977
g12153arabidopsis_hallerig12153.t183.027575.2294eucalyptus_grandisKCW7999583.410175.576
g12153arabidopsis_hallerig12153.t153.21148.1651eucalyptus_grandisKCW8017776.315869.0789
g12153arabidopsis_hallerig12153.t146.78932.1101cyanidioschyzon_merolaeCMQ022CT37.525.7353
g12153arabidopsis_hallerig12153.t197.706496.789camelina_sativaCsa08g013620.197.706496.789
g12153arabidopsis_hallerig12153.t197.706497.2477camelina_sativaCsa20g030560.197.706497.2477
g12153arabidopsis_hallerig12153.t198.165197.2477camelina_sativaCsa13g022750.198.165197.2477
g12153arabidopsis_hallerig12153.t162.84454.1284daucus_carotaKZN0898077.840967.0455
g12153arabidopsis_hallerig12153.t178.440466.055digitaria_exilisDexi9B01G0034560.1:cds48.857141.1429
g12153arabidopsis_hallerig12153.t177.522962.3853eragrostis_tefEt_4B_036772.CDS70.711356.9038
g12153arabidopsis_hallerig12153.t179.816565.5963eragrostis_tefEt_4A_032589.CDS74.042660.8511
g12153arabidopsis_hallerig12153.t178.440463.7615triticum_dicoccoidesTRIDC2AG076470.272.151958.6498
g12153arabidopsis_hallerig12153.t176.605562.844triticum_dicoccoidesTRIDC2BG083850.371.673858.7983
g12153arabidopsis_hallerig12153.t176.605562.3853triticum_dicoccoidesTRIDC2BG083670.257.986147.2222
g12153arabidopsis_hallerig12153.t199.082698.1651arabidopsis_lyratafgenesh1_pm.C_scaffold_600159899.082698.1651
g12153arabidopsis_hallerig12153.t174.770662.3853echinochloa_crusgalliscaffold74.383.cds61.278251.1278
g12153arabidopsis_hallerig12153.t15038.0734echinochloa_crusgalliscaffold18.563.cds61.581946.8927
g12153arabidopsis_hallerig12153.t176.146862.844echinochloa_crusgalliscaffold22.565.cds66.935555.2419
g12153arabidopsis_hallerig12153.t192.201887.156brassica_oleraceaBo1g078600.159.467556.213
g12153arabidopsis_hallerig12153.t169.266156.422oryza_nivaraONIVA03G18290.563.445451.6807
g12153arabidopsis_hallerig12153.t133.486229.3578trifolium_pratenseTp57577_TGAC_v2_mRNA2522481.111171.1111
g12153arabidopsis_hallerig12153.t165.137657.7982cynara_cardunculusKVH9083481.609272.4138

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression