Description

Ensembl ID g09709 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1082 bases Strand Plus strand
Position FJVB01000022.1 : 938835 - 939916 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g09709 Fcf1 PF04900 1.5e-33 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g09709.t1 668 115aa g09709.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g09709arabidopsis_hallerig09706.t151.530651.0204arabidopsis_hallerig09709.t187.826186.9565
g09709arabidopsis_hallerig12905.t124.576324.5763arabidopsis_hallerig09709.t125.217425.2174
g09709arabidopsis_hallerig08088.t150.510249.4898arabidopsis_hallerig09709.t186.08784.3478
g09709arabidopsis_hallerig03352.t117.543910.1754arabidopsis_hallerig09709.t143.478325.2174

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g09709arabidopsis_hallerig09709.t170.434859.1304chondrus_crispusCDF3997874.311962.3853
g09709arabidopsis_hallerig09709.t181.739170.4348chlamydomonas_reinhardtiiPNW7217048.958342.1875
g09709arabidopsis_hallerig09709.t134.782620.8696papaver_somniferumRZC7378815.09439.0566
g09709arabidopsis_hallerig09709.t185.217478.2609cannabis_sativa_femalecds.evm.model.07.12655045.9184
g09709arabidopsis_hallerig09709.t183.478373.913physcomitrium_patensPp3c7_15560V3.248.484842.9293
g09709arabidopsis_hallerig09709.t183.478373.0435physcomitrium_patensPp3c11_12810V3.248.484842.4242
g09709arabidopsis_hallerig09709.t184.347880beta_vulgarisKMT2038048.989946.4646
g09709arabidopsis_hallerig09709.t184.347878.2609citrullus_lanatusCla97C10G199020.148.989945.4545
g09709arabidopsis_hallerig09709.t184.347877.3913cucumis_sativusKGN5945448.989944.9495
g09709arabidopsis_hallerig09709.t184.347879.1304theobroma_cacaoEOX9582348.989945.9596
g09709arabidopsis_hallerig09709.t186.08784.3478arabidopsis_thalianaAT2G46230.150.510249.4898
g09709arabidopsis_hallerig09709.t184.347878.2609cucumis_meloMELO3C009766.2.152.717448.913
g09709arabidopsis_hallerig09709.t185.217479.1304populus_trichocarpaPotri.002G166200.1.v4.149.494945.9596
g09709arabidopsis_hallerig09709.t185.217478.2609populus_trichocarpaPotri.014G092600.3.v4.149.494945.4545
g09709arabidopsis_hallerig09709.t180.869676.5217brassica_junceacds.BjuB06g58210S47.44944.898
g09709arabidopsis_hallerig09709.t181.739177.3913brassica_junceacds.BjuA05g01470S47.959245.4082
g09709arabidopsis_hallerig09709.t181.739177.3913brassica_napusCDY6520847.959245.4082
g09709arabidopsis_hallerig09709.t186.08780brassica_napusCDY4202148.058344.6602
g09709arabidopsis_hallerig09709.t186.08781.7391brassica_napusCDY2732644.394642.1525
g09709arabidopsis_hallerig09709.t181.739177.3913brassica_napusCDX7999947.959245.4082
g09709arabidopsis_hallerig09709.t183.478377.3913malus_domestica_goldenmRNA:MD01G005580048.484844.9495
g09709arabidopsis_hallerig09709.t184.347876.5217marchantia_polymorphaPTQ4757448.743744.2211
g09709arabidopsis_hallerig09709.t184.347879.1304prunus_dulcisVVA2369733.448331.3793
g09709arabidopsis_hallerig09709.t184.347879.1304prunus_persicaONI2330548.989945.9596
g09709arabidopsis_hallerig09709.t186.08779.1304cajanus_cajanC.cajan_32965.t41.772238.3966
g09709arabidopsis_hallerig09709.t184.347878.2609cajanus_cajanC.cajan_10831.t45.539942.2535
g09709arabidopsis_hallerig09709.t159.130452.1739glycine_maxKRG9709737.362632.967
g09709arabidopsis_hallerig09709.t184.347878.2609glycine_maxKRH2674248.989945.4545
g09709arabidopsis_hallerig09709.t177.391367.8261glycine_maxKRH6885046.596940.8377
g09709arabidopsis_hallerig09709.t184.347878.2609glycine_maxKRH2259048.989945.4545
g09709arabidopsis_hallerig09709.t183.478376.5217lupinus_angustifoliusOIW2168748.73144.6701
g09709arabidopsis_hallerig09709.t181.739173.913medicago_truncatulaAES7673547.474742.9293
g09709arabidopsis_hallerig09709.t181.739174.7826medicago_truncatulaAES8273347.474743.4343
g09709arabidopsis_hallerig09709.t183.478375.6522phaseolus_vulgarisESW2199048.484843.9394
g09709arabidopsis_hallerig09709.t184.347876.5217pisum_sativumPsat3g005280.1.cds48.989944.4444
g09709arabidopsis_hallerig09709.t183.478376.5217vigna_radiataVradi0234s00150.145.93342.1053
g09709arabidopsis_hallerig09709.t183.478376.5217vigna_unguiculataVigun05g229800.1.v1.248.484844.4444
g09709arabidopsis_hallerig09709.t185.217478.2609manihot_esculentaOAY3725749.494945.4545
g09709arabidopsis_hallerig09709.t172.173964.3478capsicum_annuumPHT8893639.903835.5769
g09709arabidopsis_hallerig09709.t184.347879.1304solanum_tuberosumPGSC0003DMT40000670648.989945.9596
g09709arabidopsis_hallerig09709.t190.434880.8696solanum_lycopersicumSolyc03g121140.3.112.307711.0059
g09709arabidopsis_hallerig09709.t184.347879.1304helianthus_annuusmRNA:HanXRQr2_Chr17g082050148.989945.9596
g09709arabidopsis_hallerig09709.t165.217463.4783lactuca_sativacds-PLY77483.143.604742.4419
g09709arabidopsis_hallerig09709.t138.260933.913lactuca_sativacds-PLY80511.134.37530.4688
g09709arabidopsis_hallerig09709.t177.391368.6957lolium_perennecds.KYUSt_chr7.3752927.639824.5342
g09709arabidopsis_hallerig09709.t177.391368.6957lolium_perennecds.KYUSt_chr1.3885036.929532.7801
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003112.148.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001952.233.21830.1038
g09709arabidopsis_hallerig09709.t160.869651.3043avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003308.134.825929.3532
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001931.135.555632.2222
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_sangAVESA.00010b.r2.5CG0862470.1.CDS48.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_sangAVESA.00010b.r2.1AG0038050.1.CDS48.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_sangAVESA.00010b.r2.7AG1204260.1.CDS48.241243.7186
g09709arabidopsis_hallerig09709.t145.217444.3478avena_sativa_sangAVESA.00010b.r2.7DG1339810.1.CDS33.766233.1169
g09709arabidopsis_hallerig09709.t182.608774.7826avena_sativa_sangAVESA.00010b.r2.1AG0006500.1.CDS47.738743.2161
g09709arabidopsis_hallerig09709.t183.478375.6522avena_sativa_sangAVESA.00010b.r2.1DG0157140.1.CDS48.241243.7186
g09709arabidopsis_hallerig09709.t186.956577.3913oryza_longistaminataKN538819.1_FGP00148.780543.4146
g09709arabidopsis_hallerig09709.t186.956578.2609oryza_rufipogonORUFI06G03940.147.846943.0622
g09709arabidopsis_hallerig09709.t183.478375.6522oryza_brachyanthaOB06G13640.148.241243.7186
g09709arabidopsis_hallerig09709.t138.260933.913oryza_punctataOPUNC06G03680.137.606833.3333
g09709arabidopsis_hallerig09709.t186.956578.2609oryza_glaberrimaORGLA06G0036300.147.169842.4528
g09709arabidopsis_hallerig09709.t183.478375.6522secale_cerealeSECCE4Rv1G0262380.148.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522setaria_viridisTKW2012748.241243.7186
g09709arabidopsis_hallerig09709.t183.478376.5217sorghum_bicolorEER8923248.241244.2211
g09709arabidopsis_hallerig09709.t186.956578.2609setaria_italicaKQL0967445.454540.9091
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_aestivumTraesCS7A02G117600.148.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_aestivumTraesCS7D02G113200.148.241243.7186
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_aestivumTraesCS7B02G014700.248.241243.7186
g09709arabidopsis_hallerig09709.t182.608775.6522zea_maysZm00001eb376230_P00147.738743.7186
g09709arabidopsis_hallerig09709.t166.08760.8696zea_maysZm00001eb376200_P00142.222238.8889
g09709arabidopsis_hallerig09709.t183.478376.5217zea_maysZm00001eb376300_P00148.241244.2211
g09709arabidopsis_hallerig09709.t166.08760.8696zea_maysZm00001eb376270_P00142.222238.8889
g09709arabidopsis_hallerig09709.t183.478376.5217zea_maysZm00001eb376330_P00148.241244.2211
g09709arabidopsis_hallerig09709.t184.347879.1304ananas_comosusAco000356.1.mrna148.989945.9596
g09709arabidopsis_hallerig09709.t150.434847.8261asparagus_officinalisONK6648943.283641.0448
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_turgidumTRITD7Bv1G004470.447.290642.8571
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_turgidumTRITD7Av1G034720.145.28341.0377
g09709arabidopsis_hallerig09709.t170.434853.913caenorhabditis_elegansF30A10.9.141.326531.6327
g09709arabidopsis_hallerig09709.t173.043564.3478drosophila_melanogasterFBpp00794704237
g09709arabidopsis_hallerig09709.t161.739159.1304amborella_trichopodaERN0909785.542281.9277
g09709arabidopsis_hallerig09709.t184.347877.3913corylus_avellanaCav07g06900.t143.891440.2715
g09709arabidopsis_hallerig09709.t185.217480gossypium_raimondiiKJB4143449.494946.4646
g09709arabidopsis_hallerig09709.t183.478375.6522brachypodium_distachyonKQK1951448.241243.7186
g09709arabidopsis_hallerig09709.t178.260969.5652homo_sapiensENSP0000034439345.454540.404
g09709arabidopsis_hallerig09709.t185.217479.1304fraxinus_excelsiorFRAEX38873_v2_000000640.1.cds49.494945.9596
g09709arabidopsis_hallerig09709.t186.956578.2609oryza_glumipatulaOGLUM06G04000.147.169842.4528
g09709arabidopsis_hallerig09709.t188.695780.8696eragrostis_curvulaTVU1245739.534936.0465
g09709arabidopsis_hallerig09709.t183.478376.5217oryza_indicaBGIOSGA021867-PA48.241244.2211
g09709arabidopsis_hallerig09709.t183.478376.5217vitis_viniferaVitvi15g04618_P00148.484844.4444
g09709arabidopsis_hallerig09709.t183.478376.5217vitis_viniferaVitvi15g04598_P00137.795334.6457
g09709arabidopsis_hallerig09709.t184.347878.2609nicotiana_attenuataOIT0737725.459323.622
g09709arabidopsis_hallerig09709.t169.565263.4783coffea_canephoraCDP2169372.072165.7658
g09709arabidopsis_hallerig09709.t184.347877.3913coffea_canephoraCDP0873548.989944.9495
g09709arabidopsis_hallerig09709.t185.217479.1304ipomoea_trilobaitb11g00190.t149.494945.9596
g09709arabidopsis_hallerig09709.t183.478375.6522triticum_urartuTuG1812G0700001208.01.T0148.241243.7186
g09709arabidopsis_hallerig09709.t183.478376.5217oryza_meridionalisOMERI06G04480.348.979644.898
g09709arabidopsis_hallerig09709.t183.478376.5217oryza_sativaOs06t0158600-0148.241244.2211
g09709arabidopsis_hallerig09709.t184.347879.1304pistacia_veracds-EVM0013414.148.989945.9596
g09709arabidopsis_hallerig09709.t182.608776.5217quercus_subercds-POE98170.151.075347.3118
g09709arabidopsis_hallerig09709.t182.608776.5217quercus_subercds-POE51273.151.912648.0874
g09709arabidopsis_hallerig09709.t174.782660galdieria_sulphurariaEME3137943.654835.0254
g09709arabidopsis_hallerig09709.t181.739169.5652ciona_savignyiENSCSAVP0000000841549.473742.1053
g09709arabidopsis_hallerig09709.t185.217478.2609chenopodium_quinoaAUR62004429-RA:cds48.275944.335
g09709arabidopsis_hallerig09709.t184.347878.2609chenopodium_quinoaAUR62022636-RA:cds48.989945.4545
g09709arabidopsis_hallerig09709.t185.217479.1304dioscorea_rotundataDRNTG_09784.149.494945.9596
g09709arabidopsis_hallerig09709.t184.347880citrus_clementinaESR5815548.989946.4646
g09709arabidopsis_hallerig09709.t183.478375.6522juglans_regiacds.Jr07_07870_p148.484843.9394
g09709arabidopsis_hallerig09709.t177.391370.4348ostreococcus_lucimarinusABO9651444.540.5
g09709arabidopsis_hallerig09709.t167.826158.2609saccharomyces_cerevisiaeYDR339C41.269835.4497
g09709arabidopsis_hallerig09709.t184.347877.3913actinidia_chinensisPSS0398348.989944.9495
g09709arabidopsis_hallerig09709.t184.347877.3913actinidia_chinensisPSS2424248.989944.9495
g09709arabidopsis_hallerig09709.t183.478376.5217leersia_perrieriLPERR08G12210.148.241244.2211
g09709arabidopsis_hallerig09709.t183.478375.6522aegilops_tauschiiAET7Gv20298800.140.336136.5546
g09709arabidopsis_hallerig09709.t184.347880musa_acuminataMa04_p21960.148.989946.4646
g09709arabidopsis_hallerig09709.t184.347879.1304musa_acuminataMa05_p11390.130.891728.9809
g09709arabidopsis_hallerig09709.t183.478373.913selaginella_moellendorffiiEFJ121464842.5
g09709arabidopsis_hallerig09709.t186.08776.5217selaginella_moellendorffiiEFJ2938645.622140.553
g09709arabidopsis_hallerig09709.t183.478376.5217panicum_halliiPUZ6210548.241244.2211
g09709arabidopsis_hallerig09709.t183.478376.5217arabis_alpinaKFK3742148.979644.898
g09709arabidopsis_hallerig09709.t182.608776.5217quercus_lobataQL04p058903:mrna47.979844.4444
g09709arabidopsis_hallerig09709.t183.478377.3913quercus_lobataQL06p021685:mrna39.669436.7769
g09709arabidopsis_hallerig09709.t186.08781.7391eutrema_salsugineumESQ3926250.510247.9592
g09709arabidopsis_hallerig09709.t184.347877.3913kalanchoe_fedtschenkoiKaladp0081s0268.1.v1.148.019844.0594
g09709arabidopsis_hallerig09709.t183.478375.6522hordeum_vulgareHORVU.MOREX.r3.7HG0654170.147.290642.8571
g09709arabidopsis_hallerig09709.t183.478377.3913rosa_chinensisPRQ5835648.484844.9495
g09709arabidopsis_hallerig09709.t186.956578.2609oryza_barthiiOBART06G03880.147.169842.4528
g09709arabidopsis_hallerig09709.t184.347877.3913chara_brauniiGBG7570548.743744.7236
g09709arabidopsis_hallerig09709.t184.347878.2609corymbia_citriodoracds-KAF8026946.148.989945.4545
g09709arabidopsis_hallerig09709.t181.739176.5217brassica_rapa_ro18A05p002720.1_BraROA.146.305443.3498
g09709arabidopsis_hallerig09709.t114.782613.913olea_europaeaOE9A089285C115.454514.5455
g09709arabidopsis_hallerig09709.t186.08779.1304olea_europaeaOE9A098456C239.442236.255
g09709arabidopsis_hallerig09709.t140.869640olea_europaeaOE9A115724C19492
g09709arabidopsis_hallerig09709.t186.08779.1304olea_europaeaOE9A014302C139.442236.255
g09709arabidopsis_hallerig09709.t184.347877.3913eucalyptus_grandisKCW7154148.989944.9495
g09709arabidopsis_hallerig09709.t172.173955.6522cyanidioschyzon_merolaeCML046CT42.346932.6531
g09709arabidopsis_hallerig09709.t189.565287.8261camelina_sativaCsa06g052670.139.463638.6973
g09709arabidopsis_hallerig09709.t187.826186.087camelina_sativaCsa04g065270.157.386456.25
g09709arabidopsis_hallerig09709.t187.826186.087camelina_sativaCsa06g037730.151.530650.5102
g09709arabidopsis_hallerig09709.t187.826186.087camelina_sativaCsa05g002980.151.530650.5102
g09709arabidopsis_hallerig09709.t184.347879.1304daucus_carotaKZM9381048.989945.9596
g09709arabidopsis_hallerig09709.t161.739153.913daucus_carotaKZN045315043.662
g09709arabidopsis_hallerig09709.t186.08778.2609digitaria_exilisDexi4A01G0004240.1:cds4540.9091
g09709arabidopsis_hallerig09709.t183.478376.5217digitaria_exilisDexi4B01G0006660.1:cds48.241244.2211
g09709arabidopsis_hallerig09709.t185.217479.1304eragrostis_tefEt_2B_020721.CDS46.009442.723
g09709arabidopsis_hallerig09709.t185.217478.2609eragrostis_tefEt_2A_016556.CDS48.275944.335
g09709arabidopsis_hallerig09709.t185.217476.5217triticum_dicoccoidesTRIDC7BG002060.348.756243.7811
g09709arabidopsis_hallerig09709.t187.826178.2609triticum_dicoccoidesTRIDC7AG013740.448.325443.0622
g09709arabidopsis_hallerig09709.t167.826161.7391arabidopsis_lyratafgenesh1_pm.C_scaffold_400233443.820239.8876
g09709arabidopsis_hallerig09709.t162.608755.6522saccharum_spontaneumSspon.08G0014460-2D-mRNA-1:cds43.113838.3234
g09709arabidopsis_hallerig09709.t183.478376.5217saccharum_spontaneumSspon.08G0014460-1A-mRNA-1:cds86.486579.2793
g09709arabidopsis_hallerig09709.t18073.0435nymphaea_colorataNC9G0112890.1:cds42.201838.5321
g09709arabidopsis_hallerig09709.t183.478376.5217echinochloa_crusgalliscaffold367.4.cds48.241244.2211
g09709arabidopsis_hallerig09709.t185.217477.3913echinochloa_crusgalliscaffold10.324.cds49.494944.9495
g09709arabidopsis_hallerig09709.t186.956578.2609echinochloa_crusgalliscaffold34.443.cds46.948442.2535
g09709arabidopsis_hallerig09709.t181.739177.3913brassica_oleraceaBo4g196100.141.228139.0351
g09709arabidopsis_hallerig09709.t146.956546.087corchorus_capsularisOMO643613635.3333
g09709arabidopsis_hallerig09709.t186.956578.2609oryza_nivaraONIVA06G05240.147.846943.0622
g09709arabidopsis_hallerig09709.t180.869675.6522trifolium_pratenseTp57577_TGAC_v2_mRNA485846.969743.9394
g09709arabidopsis_hallerig09709.t137.391330.4348cynara_cardunculusKVH9727721.39317.4129

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression