Description

Ensembl ID g09706 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1708 bases Strand Plus strand
Position FJVB01000022.1 : 929605 - 931312 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g09706 Fcf1 PF04900 2.1e-40 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g09706.t1 862 196aa g09706.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g09706arabidopsis_hallerig09709.t187.826186.9565arabidopsis_hallerig09706.t151.530651.0204
g09706arabidopsis_hallerig12905.t194.915389.8305arabidopsis_hallerig09706.t157.142954.0816
g09706arabidopsis_hallerig08088.t198.469494.898arabidopsis_hallerig09706.t198.469494.898
g09706arabidopsis_hallerig03352.t125.61414.386arabidopsis_hallerig09706.t137.244920.9184

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g09706arabidopsis_hallerig09706.t144.387837.7551chondrus_crispusCDF3997879.816567.8899
g09706arabidopsis_hallerig09706.t180.10265.8163chlamydomonas_reinhardtiiPNW7217081.770867.1875
g09706arabidopsis_hallerig09706.t154.591840.3061papaver_somniferumRZC7378840.377429.8113
g09706arabidopsis_hallerig09706.t192.857183.1633cannabis_sativa_femalecds.evm.model.07.126592.857183.1633
g09706arabidopsis_hallerig09706.t189.285773.9796physcomitrium_patensPp3c7_15560V3.288.383873.2323
g09706arabidopsis_hallerig09706.t188.265373.4694physcomitrium_patensPp3c11_12810V3.287.373772.7273
g09706arabidopsis_hallerig09706.t189.795982.1429beta_vulgarisKMT2038088.888981.3131
g09706arabidopsis_hallerig09706.t193.367383.6735citrullus_lanatusCla97C10G199020.192.424282.8283
g09706arabidopsis_hallerig09706.t193.367383.1633cucumis_sativusKGN5945492.424282.3232
g09706arabidopsis_hallerig09706.t194.89883.1633theobroma_cacaoEOX9582393.939482.3232
g09706arabidopsis_hallerig09706.t198.469496.4286arabidopsis_thalianaAT2G46230.198.469496.4286
g09706arabidopsis_hallerig09706.t183.673576.0204cucumis_meloMELO3C009766.2.189.130480.9783
g09706arabidopsis_hallerig09706.t190.816381.1225populus_trichocarpaPotri.002G166200.1.v4.189.89980.303
g09706arabidopsis_hallerig09706.t191.836782.1429populus_trichocarpaPotri.014G092600.3.v4.190.909181.3131
g09706arabidopsis_hallerig09706.t193.877586.7347brassica_junceacds.BjuB06g58210S93.877586.7347
g09706arabidopsis_hallerig09706.t194.89886.7347brassica_junceacds.BjuA05g01470S94.89886.7347
g09706arabidopsis_hallerig09706.t194.89887.7551brassica_napusCDY6520894.89887.7551
g09706arabidopsis_hallerig09706.t193.877586.2245brassica_napusCDY4202189.320482.0388
g09706arabidopsis_hallerig09706.t192.857185.2041brassica_napusCDY2732681.614374.8879
g09706arabidopsis_hallerig09706.t194.89886.7347brassica_napusCDX7999994.89886.7347
g09706arabidopsis_hallerig09706.t192.346982.1429malus_domestica_goldenmRNA:MD01G005580091.414181.3131
g09706arabidopsis_hallerig09706.t189.795976.5306marchantia_polymorphaPTQ4757488.442275.3769
g09706arabidopsis_hallerig09706.t192.857183.6735prunus_dulcisVVA2369762.758656.5517
g09706arabidopsis_hallerig09706.t192.857183.6735prunus_persicaONI2330591.919282.8283
g09706arabidopsis_hallerig09706.t190.816381.1225cajanus_cajanC.cajan_32965.t75.105567.0886
g09706arabidopsis_hallerig09706.t189.795980.102cajanus_cajanC.cajan_10831.t82.629173.7089
g09706arabidopsis_hallerig09706.t166.836756.1224glycine_maxKRG9709771.97860.4396
g09706arabidopsis_hallerig09706.t191.326582.1429glycine_maxKRH2674290.40481.3131
g09706arabidopsis_hallerig09706.t176.530666.3265glycine_maxKRH6885078.53468.0628
g09706arabidopsis_hallerig09706.t191.326582.1429glycine_maxKRH2259090.40481.3131
g09706arabidopsis_hallerig09706.t189.795981.1225lupinus_angustifoliusOIW2168789.340180.7107
g09706arabidopsis_hallerig09706.t188.775578.0612medicago_truncatulaAES7673587.878877.2727
g09706arabidopsis_hallerig09706.t188.775579.0816medicago_truncatulaAES8273387.878878.2828
g09706arabidopsis_hallerig09706.t190.306180.6122phaseolus_vulgarisESW2199089.393979.798
g09706arabidopsis_hallerig09706.t189.795979.5918pisum_sativumPsat3g005280.1.cds88.888978.7879
g09706arabidopsis_hallerig09706.t189.285779.5918vigna_radiataVradi0234s00150.183.732174.6412
g09706arabidopsis_hallerig09706.t190.306181.6327vigna_unguiculataVigun05g229800.1.v1.289.393980.8081
g09706arabidopsis_hallerig09706.t191.836782.1429manihot_esculentaOAY3725790.909181.3131
g09706arabidopsis_hallerig09706.t181.632771.4286capsicum_annuumPHT8893676.923167.3077
g09706arabidopsis_hallerig09706.t192.857183.1633solanum_tuberosumPGSC0003DMT40000670691.919282.3232
g09706arabidopsis_hallerig09706.t191.836781.6327solanum_lycopersicumSolyc03g121140.3.121.301818.9349
g09706arabidopsis_hallerig09706.t193.367383.6735helianthus_annuusmRNA:HanXRQr2_Chr17g082050192.424282.8283
g09706arabidopsis_hallerig09706.t180.10271.9388lactuca_sativacds-PLY77483.191.279181.9767
g09706arabidopsis_hallerig09706.t160.204152.0408lactuca_sativacds-PLY80511.192.187579.6875
g09706arabidopsis_hallerig09706.t183.163373.9796lolium_perennecds.KYUSt_chr7.3752950.621145.0311
g09706arabidopsis_hallerig09706.t183.163372.9592lolium_perennecds.KYUSt_chr1.3885067.634959.3361
g09706arabidopsis_hallerig09706.t188.265379.5918avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003112.186.934778.392
g09706arabidopsis_hallerig09706.t188.775579.0816avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001952.260.207653.6332
g09706arabidopsis_hallerig09706.t173.979663.7755avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003308.172.139362.1891
g09706arabidopsis_hallerig09706.t188.775579.0816avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001931.164.444457.4074
g09706arabidopsis_hallerig09706.t188.265379.5918avena_sativa_sangAVESA.00010b.r2.5CG0862470.1.CDS86.934778.392
g09706arabidopsis_hallerig09706.t188.775579.0816avena_sativa_sangAVESA.00010b.r2.1AG0038050.1.CDS87.437277.8895
g09706arabidopsis_hallerig09706.t188.265379.5918avena_sativa_sangAVESA.00010b.r2.7AG1204260.1.CDS86.934778.392
g09706arabidopsis_hallerig09706.t164.285759.1837avena_sativa_sangAVESA.00010b.r2.7DG1339810.1.CDS81.818275.3247
g09706arabidopsis_hallerig09706.t188.265378.5714avena_sativa_sangAVESA.00010b.r2.1AG0006500.1.CDS86.934777.3869
g09706arabidopsis_hallerig09706.t188.775579.0816avena_sativa_sangAVESA.00010b.r2.1DG0157140.1.CDS87.437277.8895
g09706arabidopsis_hallerig09706.t187.755177.0408oryza_longistaminataKN538819.1_FGP00183.902473.6585
g09706arabidopsis_hallerig09706.t186.734777.0408oryza_rufipogonORUFI06G03940.181.339772.2488
g09706arabidopsis_hallerig09706.t189.285779.0816oryza_brachyanthaOB06G13640.187.939777.8895
g09706arabidopsis_hallerig09706.t145.918438.2653oryza_punctataOPUNC06G03680.176.923164.1026
g09706arabidopsis_hallerig09706.t187.755178.0612oryza_glaberrimaORGLA06G0036300.181.132172.1698
g09706arabidopsis_hallerig09706.t188.775578.0612secale_cerealeSECCE4Rv1G0262380.187.437276.8844
g09706arabidopsis_hallerig09706.t188.775579.0816setaria_viridisTKW2012787.437277.8895
g09706arabidopsis_hallerig09706.t188.265378.5714sorghum_bicolorEER8923286.934777.3869
g09706arabidopsis_hallerig09706.t187.755178.0612setaria_italicaKQL0967478.181869.5455
g09706arabidopsis_hallerig09706.t188.775577.551triticum_aestivumTraesCS7A02G117600.187.437276.3819
g09706arabidopsis_hallerig09706.t188.265377.551triticum_aestivumTraesCS7D02G113200.186.934776.3819
g09706arabidopsis_hallerig09706.t188.775578.5714triticum_aestivumTraesCS7B02G014700.287.437277.3869
g09706arabidopsis_hallerig09706.t187.755178.0612zea_maysZm00001eb376230_P00186.432276.8844
g09706arabidopsis_hallerig09706.t178.571468.8775zea_maysZm00001eb376200_P00185.555675
g09706arabidopsis_hallerig09706.t188.265378.5714zea_maysZm00001eb376300_P00186.934777.3869
g09706arabidopsis_hallerig09706.t178.061268.8775zea_maysZm00001eb376270_P0018575
g09706arabidopsis_hallerig09706.t188.775578.5714zea_maysZm00001eb376330_P00187.437277.3869
g09706arabidopsis_hallerig09706.t191.326582.1429ananas_comosusAco000356.1.mrna190.40481.3131
g09706arabidopsis_hallerig09706.t143.877635.7143asparagus_officinalisONK6648964.179152.2388
g09706arabidopsis_hallerig09706.t188.775578.5714triticum_turgidumTRITD7Bv1G004470.485.714375.8621
g09706arabidopsis_hallerig09706.t187.244976.0204triticum_turgidumTRITD7Av1G034720.180.660470.283
g09706arabidopsis_hallerig09706.t170.918450caenorhabditis_elegansF30A10.9.170.918450
g09706arabidopsis_hallerig09706.t172.44958.1633drosophila_melanogasterFBpp00794707157
g09706arabidopsis_hallerig09706.t139.285737.2449amborella_trichopodaERN0909792.771187.9518
g09706arabidopsis_hallerig09706.t184.183773.9796corylus_avellanaCav07g06900.t174.660665.6109
g09706arabidopsis_hallerig09706.t195.408283.1633gossypium_raimondiiKJB4143494.444482.3232
g09706arabidopsis_hallerig09706.t188.775578.5714brachypodium_distachyonKQK1951487.437277.3869
g09706arabidopsis_hallerig09706.t180.612265.3061homo_sapiensENSP0000034439379.79864.6465
g09706arabidopsis_hallerig09706.t192.346982.1429fraxinus_excelsiorFRAEX38873_v2_000000640.1.cds91.414181.3131
g09706arabidopsis_hallerig09706.t185.714376.0204oryza_glumipatulaOGLUM06G04000.179.245370.283
g09706arabidopsis_hallerig09706.t188.775578.5714eragrostis_curvulaTVU1245767.441959.6899
g09706arabidopsis_hallerig09706.t189.285779.5918oryza_indicaBGIOSGA021867-PA87.939778.392
g09706arabidopsis_hallerig09706.t190.816381.6327vitis_viniferaVitvi15g04618_P00189.89980.8081
g09706arabidopsis_hallerig09706.t190.816381.6327vitis_viniferaVitvi15g04598_P00170.078762.9921
g09706arabidopsis_hallerig09706.t193.877583.6735nicotiana_attenuataOIT0737748.29443.0446
g09706arabidopsis_hallerig09706.t15044.898coffea_canephoraCDP2169388.288379.2793
g09706arabidopsis_hallerig09706.t192.857181.1225coffea_canephoraCDP0873591.919280.303
g09706arabidopsis_hallerig09706.t191.836783.6735ipomoea_trilobaitb11g00190.t190.909182.8283
g09706arabidopsis_hallerig09706.t188.775577.551triticum_urartuTuG1812G0700001208.01.T0187.437276.3819
g09706arabidopsis_hallerig09706.t188.265378.0612oryza_meridionalisOMERI06G04480.388.265378.0612
g09706arabidopsis_hallerig09706.t189.285779.5918oryza_sativaOs06t0158600-0187.939778.392
g09706arabidopsis_hallerig09706.t192.857184.6939pistacia_veracds-EVM0013414.191.919283.8384
g09706arabidopsis_hallerig09706.t182.653171.9388quercus_subercds-POE98170.187.096875.8064
g09706arabidopsis_hallerig09706.t184.693973.9796quercus_subercds-POE51273.190.710479.235
g09706arabidopsis_hallerig09706.t173.979655.6122galdieria_sulphurariaEME3137973.604155.3299
g09706arabidopsis_hallerig09706.t17561.7347ciona_savignyiENSCSAVP0000000841577.368463.6842
g09706arabidopsis_hallerig09706.t188.775578.5714chenopodium_quinoaAUR62004429-RA:cds85.714375.8621
g09706arabidopsis_hallerig09706.t190.816381.1225chenopodium_quinoaAUR62022636-RA:cds89.89980.303
g09706arabidopsis_hallerig09706.t191.836782.6531dioscorea_rotundataDRNTG_09784.190.909181.8182
g09706arabidopsis_hallerig09706.t193.877583.6735citrus_clementinaESR5815592.929382.8283
g09706arabidopsis_hallerig09706.t192.857179.5918juglans_regiacds.Jr07_07870_p191.919278.7879
g09706arabidopsis_hallerig09706.t176.020462.2449ostreococcus_lucimarinusABO9651474.561
g09706arabidopsis_hallerig09706.t171.938857.6531saccharomyces_cerevisiaeYDR339C74.603259.7884
g09706arabidopsis_hallerig09706.t192.346981.6327actinidia_chinensisPSS0398391.414180.8081
g09706arabidopsis_hallerig09706.t192.346981.6327actinidia_chinensisPSS2424291.414180.8081
g09706arabidopsis_hallerig09706.t189.795980.6122leersia_perrieriLPERR08G12210.188.442279.397
g09706arabidopsis_hallerig09706.t188.265377.551aegilops_tauschiiAET7Gv20298800.172.689163.8655
g09706arabidopsis_hallerig09706.t191.326584.1837musa_acuminataMa04_p21960.190.40483.3333
g09706arabidopsis_hallerig09706.t190.306182.1429musa_acuminataMa05_p11390.156.369451.2739
g09706arabidopsis_hallerig09706.t186.734775selaginella_moellendorffiiEFJ121468573.5
g09706arabidopsis_hallerig09706.t186.224574.4898selaginella_moellendorffiiEFJ2938677.880267.2811
g09706arabidopsis_hallerig09706.t189.795979.0816panicum_halliiPUZ6210588.442277.8895
g09706arabidopsis_hallerig09706.t195.408287.7551arabis_alpinaKFK3742195.408287.7551
g09706arabidopsis_hallerig09706.t190.816379.0816quercus_lobataQL04p058903:mrna89.89978.2828
g09706arabidopsis_hallerig09706.t189.285777.551quercus_lobataQL06p021685:mrna72.31462.8099
g09706arabidopsis_hallerig09706.t197.44990.8163eutrema_salsugineumESQ3926297.44990.8163
g09706arabidopsis_hallerig09706.t188.265377.551kalanchoe_fedtschenkoiKaladp0081s0268.1.v1.185.643675.2475
g09706arabidopsis_hallerig09706.t187.755176.5306hordeum_vulgareHORVU.MOREX.r3.7HG0654170.184.729173.8916
g09706arabidopsis_hallerig09706.t193.367383.1633rosa_chinensisPRQ5835692.424282.3232
g09706arabidopsis_hallerig09706.t187.755177.551oryza_barthiiOBART06G03880.181.132171.6981
g09706arabidopsis_hallerig09706.t186.734774.4898chara_brauniiGBG7570585.427173.3668
g09706arabidopsis_hallerig09706.t193.367383.1633corymbia_citriodoracds-KAF8026946.192.424282.3232
g09706arabidopsis_hallerig09706.t194.89886.2245brassica_rapa_ro18A05p002720.1_BraROA.191.625683.2512
g09706arabidopsis_hallerig09706.t130.10223.4694olea_europaeaOE9A089285C153.636441.8182
g09706arabidopsis_hallerig09706.t191.326581.1225olea_europaeaOE9A098456C271.314763.3466
g09706arabidopsis_hallerig09706.t123.979623.4694olea_europaeaOE9A115724C19492
g09706arabidopsis_hallerig09706.t191.326581.1225olea_europaeaOE9A014302C171.314763.3466
g09706arabidopsis_hallerig09706.t193.367382.1429eucalyptus_grandisKCW7154192.424281.3131
g09706arabidopsis_hallerig09706.t173.979655.102cyanidioschyzon_merolaeCML046CT73.979655.102
g09706arabidopsis_hallerig09706.t198.469495.9184camelina_sativaCsa06g052670.173.946472.0307
g09706arabidopsis_hallerig09706.t189.285786.7347camelina_sativaCsa04g065270.199.431896.5909
g09706arabidopsis_hallerig09706.t199.489896.9388camelina_sativaCsa06g037730.199.489896.9388
g09706arabidopsis_hallerig09706.t199.489896.9388camelina_sativaCsa05g002980.199.489896.9388
g09706arabidopsis_hallerig09706.t191.326583.6735daucus_carotaKZM9381090.40482.8283
g09706arabidopsis_hallerig09706.t141.326536.2245daucus_carotaKZN0453157.042350
g09706arabidopsis_hallerig09706.t188.265378.0612digitaria_exilisDexi4A01G0004240.1:cds78.636469.5455
g09706arabidopsis_hallerig09706.t189.285779.0816digitaria_exilisDexi4B01G0006660.1:cds87.939777.8895
g09706arabidopsis_hallerig09706.t187.244978.5714eragrostis_tefEt_2B_020721.CDS80.281772.3005
g09706arabidopsis_hallerig09706.t187.244978.0612eragrostis_tefEt_2A_016556.CDS84.236575.3695
g09706arabidopsis_hallerig09706.t187.244977.0408triticum_dicoccoidesTRIDC7BG002060.385.074675.1244
g09706arabidopsis_hallerig09706.t187.244976.0204triticum_dicoccoidesTRIDC7AG013740.481.818271.2919
g09706arabidopsis_hallerig09706.t186.224583.1633arabidopsis_lyratafgenesh1_pm.C_scaffold_400233494.943891.573
g09706arabidopsis_hallerig09706.t172.44963.7755saccharum_spontaneumSspon.08G0014460-2D-mRNA-1:cds85.029974.8503
g09706arabidopsis_hallerig09706.t153.571448.9796saccharum_spontaneumSspon.08G0014460-1A-mRNA-1:cds94.594686.4865
g09706arabidopsis_hallerig09706.t184.183774.4898nymphaea_colorataNC9G0112890.1:cds75.688166.9725
g09706arabidopsis_hallerig09706.t187.755178.5714echinochloa_crusgalliscaffold367.4.cds86.432277.3869
g09706arabidopsis_hallerig09706.t186.734777.0408echinochloa_crusgalliscaffold10.324.cds85.858676.2626
g09706arabidopsis_hallerig09706.t186.734777.0408echinochloa_crusgalliscaffold34.443.cds79.812270.892
g09706arabidopsis_hallerig09706.t194.89887.2449brassica_oleraceaBo4g196100.181.578975
g09706arabidopsis_hallerig09706.t170.408261.2245corchorus_capsularisOMO643619280
g09706arabidopsis_hallerig09706.t186.734777.0408oryza_nivaraONIVA06G05240.181.339772.2488
g09706arabidopsis_hallerig09706.t188.265380.102trifolium_pratenseTp57577_TGAC_v2_mRNA485887.373779.2929
g09706arabidopsis_hallerig09706.t162.244952.0408cynara_cardunculusKVH9727760.696550.7463

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression