Description

Ensembl ID g08088 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 1717 bases Strand Minus strand
Position FJVB01000016.1 : 1189700 - 1191416 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g08088 Fcf1 PF04900 1.1e-40 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g08088.t1 898 196aa g08088.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g08088arabidopsis_hallerig12905.t197.457697.4576arabidopsis_hallerig08088.t158.673558.6735
g08088arabidopsis_hallerig09709.t186.08784.3478arabidopsis_hallerig08088.t150.510249.4898
g08088arabidopsis_hallerig09706.t198.469494.898arabidopsis_hallerig08088.t198.469494.898
g08088arabidopsis_hallerig03352.t125.61414.386arabidopsis_hallerig08088.t137.244920.9184

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g08088arabidopsis_hallerig08088.t144.89837.2449chondrus_crispusCDF3997880.733966.9725
g08088arabidopsis_hallerig08088.t181.122565.8163chlamydomonas_reinhardtiiPNW7217082.812567.1875
g08088arabidopsis_hallerig08088.t154.591842.3469papaver_somniferumRZC7378840.377431.3208
g08088arabidopsis_hallerig08088.t194.387884.1837cannabis_sativa_femalecds.evm.model.07.126594.387884.1837
g08088arabidopsis_hallerig08088.t190.816376.0204physcomitrium_patensPp3c7_15560V3.289.89975.2525
g08088arabidopsis_hallerig08088.t189.795975physcomitrium_patensPp3c11_12810V3.288.888974.2424
g08088arabidopsis_hallerig08088.t191.326582.6531beta_vulgarisKMT2038090.40481.8182
g08088arabidopsis_hallerig08088.t194.89884.6939citrullus_lanatusCla97C10G199020.193.939483.8384
g08088arabidopsis_hallerig08088.t194.89884.6939cucumis_sativusKGN5945493.939483.8384
g08088arabidopsis_hallerig08088.t195.408284.1837theobroma_cacaoEOX9582394.444483.3333
g08088arabidopsis_hallerig08088.t184.183782.6531arabidopsis_thalianaAT1G26530.192.696691.0112
g08088arabidopsis_hallerig08088.t185.204178.0612cucumis_meloMELO3C009766.2.190.760983.1522
g08088arabidopsis_hallerig08088.t192.346981.6327populus_trichocarpaPotri.002G166200.1.v4.191.414180.8081
g08088arabidopsis_hallerig08088.t193.367382.6531populus_trichocarpaPotri.014G092600.3.v4.192.424281.8182
g08088arabidopsis_hallerig08088.t195.918488.7755brassica_junceacds.BjuB06g58210S95.918488.7755
g08088arabidopsis_hallerig08088.t196.938888.7755brassica_junceacds.BjuA05g01470S96.938888.7755
g08088arabidopsis_hallerig08088.t196.938889.7959brassica_napusCDY6520896.938889.7959
g08088arabidopsis_hallerig08088.t195.918488.2653brassica_napusCDY4202191.262183.9806
g08088arabidopsis_hallerig08088.t194.89887.2449brassica_napusCDY2732683.408176.6816
g08088arabidopsis_hallerig08088.t196.938888.7755brassica_napusCDX7999996.938888.7755
g08088arabidopsis_hallerig08088.t193.877584.6939malus_domestica_goldenmRNA:MD01G005580092.929383.8384
g08088arabidopsis_hallerig08088.t191.326576.5306marchantia_polymorphaPTQ4757489.949775.3769
g08088arabidopsis_hallerig08088.t194.387885.2041prunus_dulcisVVA2369763.793157.5862
g08088arabidopsis_hallerig08088.t194.387885.2041prunus_persicaONI2330593.434384.3434
g08088arabidopsis_hallerig08088.t192.346982.1429cajanus_cajanC.cajan_32965.t76.371367.9325
g08088arabidopsis_hallerig08088.t191.326581.6327cajanus_cajanC.cajan_10831.t84.037675.1174
g08088arabidopsis_hallerig08088.t167.857156.6327glycine_maxKRG9709773.076960.989
g08088arabidopsis_hallerig08088.t192.857183.1633glycine_maxKRH2674291.919282.3232
g08088arabidopsis_hallerig08088.t178.061266.8367glycine_maxKRH6885080.104768.5864
g08088arabidopsis_hallerig08088.t192.857183.1633glycine_maxKRH2259091.919282.3232
g08088arabidopsis_hallerig08088.t191.326582.1429lupinus_angustifoliusOIW2168790.862981.7259
g08088arabidopsis_hallerig08088.t190.306179.5918medicago_truncatulaAES7673589.393978.7879
g08088arabidopsis_hallerig08088.t190.306180.6122medicago_truncatulaAES8273389.393979.798
g08088arabidopsis_hallerig08088.t191.836781.1225phaseolus_vulgarisESW2199090.909180.303
g08088arabidopsis_hallerig08088.t190.816382.1429pisum_sativumPsat3g005280.1.cds89.89981.3131
g08088arabidopsis_hallerig08088.t190.816379.5918vigna_radiataVradi0234s00150.185.167574.6412
g08088arabidopsis_hallerig08088.t191.836781.6327vigna_unguiculataVigun05g229800.1.v1.290.909180.8081
g08088arabidopsis_hallerig08088.t193.367382.6531manihot_esculentaOAY3725792.424281.8182
g08088arabidopsis_hallerig08088.t183.163372.449capsicum_annuumPHT8893678.365468.2692
g08088arabidopsis_hallerig08088.t193.877584.1837solanum_tuberosumPGSC0003DMT40000670692.929383.3333
g08088arabidopsis_hallerig08088.t192.857182.6531solanum_lycopersicumSolyc03g121140.3.121.538519.1716
g08088arabidopsis_hallerig08088.t194.89886.2245helianthus_annuusmRNA:HanXRQr2_Chr17g082050193.939485.3535
g08088arabidopsis_hallerig08088.t181.632773.4694lactuca_sativacds-PLY77483.193.023383.7209
g08088arabidopsis_hallerig08088.t160.714352.551lactuca_sativacds-PLY80511.192.968880.4688
g08088arabidopsis_hallerig08088.t184.693973.9796lolium_perennecds.KYUSt_chr7.3752951.552845.0311
g08088arabidopsis_hallerig08088.t184.693972.9592lolium_perennecds.KYUSt_chr1.3885068.879759.3361
g08088arabidopsis_hallerig08088.t189.795980.102avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0003112.188.442278.8945
g08088arabidopsis_hallerig08088.t190.306179.5918avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0001952.261.245753.9792
g08088arabidopsis_hallerig08088.t175.510264.2857avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0003308.173.631862.6866
g08088arabidopsis_hallerig08088.t190.306179.5918avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0001931.165.555657.7778
g08088arabidopsis_hallerig08088.t189.795980.102avena_sativa_sangAVESA.00010b.r2.5CG0862470.1.CDS88.442278.8945
g08088arabidopsis_hallerig08088.t190.306179.5918avena_sativa_sangAVESA.00010b.r2.1AG0038050.1.CDS88.944778.392
g08088arabidopsis_hallerig08088.t189.795980.102avena_sativa_sangAVESA.00010b.r2.7AG1204260.1.CDS88.442278.8945
g08088arabidopsis_hallerig08088.t165.816359.1837avena_sativa_sangAVESA.00010b.r2.7DG1339810.1.CDS83.766275.3247
g08088arabidopsis_hallerig08088.t189.795979.0816avena_sativa_sangAVESA.00010b.r2.1AG0006500.1.CDS88.442277.8895
g08088arabidopsis_hallerig08088.t190.306179.5918avena_sativa_sangAVESA.00010b.r2.1DG0157140.1.CDS88.944778.392
g08088arabidopsis_hallerig08088.t189.285777.551oryza_longistaminataKN538819.1_FGP00185.365974.1463
g08088arabidopsis_hallerig08088.t188.265377.551oryza_rufipogonORUFI06G03940.182.775172.7273
g08088arabidopsis_hallerig08088.t190.816379.5918oryza_brachyanthaOB06G13640.189.447278.392
g08088arabidopsis_hallerig08088.t145.918437.7551oryza_punctataOPUNC06G03680.176.923163.2479
g08088arabidopsis_hallerig08088.t189.285778.5714oryza_glaberrimaORGLA06G0036300.182.547272.6415
g08088arabidopsis_hallerig08088.t190.306179.5918secale_cerealeSECCE4Rv1G0262380.188.944778.392
g08088arabidopsis_hallerig08088.t190.306180.6122setaria_viridisTKW2012788.944779.397
g08088arabidopsis_hallerig08088.t189.795979.0816sorghum_bicolorEER8923288.442277.8895
g08088arabidopsis_hallerig08088.t189.285779.5918setaria_italicaKQL0967479.545570.9091
g08088arabidopsis_hallerig08088.t190.306179.0816triticum_aestivumTraesCS7A02G117600.188.944777.8895
g08088arabidopsis_hallerig08088.t189.795979.0816triticum_aestivumTraesCS7D02G113200.188.442277.8895
g08088arabidopsis_hallerig08088.t190.306180.102triticum_aestivumTraesCS7B02G014700.288.944778.8945
g08088arabidopsis_hallerig08088.t189.285778.5714zea_maysZm00001eb376230_P00187.939777.3869
g08088arabidopsis_hallerig08088.t180.10269.3878zea_maysZm00001eb376200_P00187.222275.5556
g08088arabidopsis_hallerig08088.t189.795979.0816zea_maysZm00001eb376300_P00188.442277.8895
g08088arabidopsis_hallerig08088.t179.591869.3878zea_maysZm00001eb376270_P00186.666775.5556
g08088arabidopsis_hallerig08088.t190.306179.0816zea_maysZm00001eb376330_P00188.944777.8895
g08088arabidopsis_hallerig08088.t192.857183.6735ananas_comosusAco000356.1.mrna191.919282.8283
g08088arabidopsis_hallerig08088.t145.408236.7347asparagus_officinalisONK6648966.417953.7313
g08088arabidopsis_hallerig08088.t190.306180.102triticum_turgidumTRITD7Bv1G004470.487.192177.3399
g08088arabidopsis_hallerig08088.t188.775577.551triticum_turgidumTRITD7Av1G034720.182.075571.6981
g08088arabidopsis_hallerig08088.t171.938851.5306caenorhabditis_elegansF30A10.9.171.938851.5306
g08088arabidopsis_hallerig08088.t173.469458.6735drosophila_melanogasterFBpp00794707257.5
g08088arabidopsis_hallerig08088.t140.306138.2653amborella_trichopodaERN0909795.180790.3614
g08088arabidopsis_hallerig08088.t185.204176.0204corylus_avellanaCav07g06900.t175.565667.4208
g08088arabidopsis_hallerig08088.t195.918485.2041gossypium_raimondiiKJB4143494.949584.3434
g08088arabidopsis_hallerig08088.t190.306179.5918brachypodium_distachyonKQK1951488.944778.392
g08088arabidopsis_hallerig08088.t181.632766.8367homo_sapiensENSP0000034439380.808166.1616
g08088arabidopsis_hallerig08088.t193.877584.6939fraxinus_excelsiorFRAEX38873_v2_000000640.1.cds92.929383.8384
g08088arabidopsis_hallerig08088.t187.244976.5306oryza_glumipatulaOGLUM06G04000.180.660470.7547
g08088arabidopsis_hallerig08088.t190.306179.5918eragrostis_curvulaTVU1245768.604760.4651
g08088arabidopsis_hallerig08088.t190.816380.102oryza_indicaBGIOSGA021867-PA89.447278.8945
g08088arabidopsis_hallerig08088.t191.836782.6531vitis_viniferaVitvi15g04618_P00190.909181.8182
g08088arabidopsis_hallerig08088.t191.836782.6531vitis_viniferaVitvi15g04598_P00170.866163.7795
g08088arabidopsis_hallerig08088.t194.89884.6939nicotiana_attenuataOIT0737748.818943.5696
g08088arabidopsis_hallerig08088.t150.510245.4082coffea_canephoraCDP2169389.189280.1802
g08088arabidopsis_hallerig08088.t193.877583.1633coffea_canephoraCDP0873592.929382.3232
g08088arabidopsis_hallerig08088.t193.367384.6939ipomoea_trilobaitb11g00190.t192.424283.8384
g08088arabidopsis_hallerig08088.t190.306179.0816triticum_urartuTuG1812G0700001208.01.T0188.944777.8895
g08088arabidopsis_hallerig08088.t189.795978.5714oryza_meridionalisOMERI06G04480.389.795978.5714
g08088arabidopsis_hallerig08088.t190.816380.102oryza_sativaOs06t0158600-0189.447278.8945
g08088arabidopsis_hallerig08088.t193.877586.2245pistacia_veracds-EVM0013414.192.929385.3535
g08088arabidopsis_hallerig08088.t183.673573.4694quercus_subercds-POE98170.188.17277.4194
g08088arabidopsis_hallerig08088.t185.714375.5102quercus_subercds-POE51273.191.803380.8743
g08088arabidopsis_hallerig08088.t17555.6122galdieria_sulphurariaEME3137974.619355.3299
g08088arabidopsis_hallerig08088.t176.020463.2653ciona_savignyiENSCSAVP0000000841578.421165.2632
g08088arabidopsis_hallerig08088.t189.795979.0816chenopodium_quinoaAUR62004429-RA:cds86.699576.3547
g08088arabidopsis_hallerig08088.t191.836781.6327chenopodium_quinoaAUR62022636-RA:cds90.909180.8081
g08088arabidopsis_hallerig08088.t193.367383.1633dioscorea_rotundataDRNTG_09784.192.424282.3232
g08088arabidopsis_hallerig08088.t194.89884.6939citrus_clementinaESR5815593.939483.8384
g08088arabidopsis_hallerig08088.t193.877582.1429juglans_regiacds.Jr07_07870_p192.929381.3131
g08088arabidopsis_hallerig08088.t177.55162.7551ostreococcus_lucimarinusABO965147661.5
g08088arabidopsis_hallerig08088.t173.469458.1633saccharomyces_cerevisiaeYDR339C76.190560.3175
g08088arabidopsis_hallerig08088.t193.367384.1837actinidia_chinensisPSS0398392.424283.3333
g08088arabidopsis_hallerig08088.t193.367384.1837actinidia_chinensisPSS2424292.424283.3333
g08088arabidopsis_hallerig08088.t191.326581.1225leersia_perrieriLPERR08G12210.189.949779.8995
g08088arabidopsis_hallerig08088.t189.795979.0816aegilops_tauschiiAET7Gv20298800.173.949665.1261
g08088arabidopsis_hallerig08088.t192.857185.2041musa_acuminataMa04_p21960.191.919284.3434
g08088arabidopsis_hallerig08088.t191.836784.6939musa_acuminataMa05_p11390.157.324852.8662
g08088arabidopsis_hallerig08088.t188.775577.0408selaginella_moellendorffiiEFJ121468775.5
g08088arabidopsis_hallerig08088.t188.265376.5306selaginella_moellendorffiiEFJ2938679.723569.1244
g08088arabidopsis_hallerig08088.t191.326580.6122panicum_halliiPUZ6210589.949779.397
g08088arabidopsis_hallerig08088.t196.938890.3061arabis_alpinaKFK3742196.938890.3061
g08088arabidopsis_hallerig08088.t191.836780.6122quercus_lobataQL04p058903:mrna90.909179.798
g08088arabidopsis_hallerig08088.t190.306179.0816quercus_lobataQL06p021685:mrna73.140564.0496
g08088arabidopsis_hallerig08088.t199.489893.3673eutrema_salsugineumESQ3926299.489893.3673
g08088arabidopsis_hallerig08088.t189.795979.5918kalanchoe_fedtschenkoiKaladp0081s0268.1.v1.187.128777.2277
g08088arabidopsis_hallerig08088.t189.285778.0612hordeum_vulgareHORVU.MOREX.r3.7HG0654170.186.206975.3695
g08088arabidopsis_hallerig08088.t194.89884.6939rosa_chinensisPRQ5835693.939483.8384
g08088arabidopsis_hallerig08088.t189.285778.0612oryza_barthiiOBART06G03880.182.547272.1698
g08088arabidopsis_hallerig08088.t188.265376.0204chara_brauniiGBG7570586.934774.8744
g08088arabidopsis_hallerig08088.t194.89885.2041corymbia_citriodoracds-KAF8026946.193.939484.3434
g08088arabidopsis_hallerig08088.t196.938888.2653brassica_rapa_ro18A05p002720.1_BraROA.193.596185.2217
g08088arabidopsis_hallerig08088.t131.632725.5102olea_europaeaOE9A089285C156.363645.4545
g08088arabidopsis_hallerig08088.t192.857183.1633olea_europaeaOE9A098456C272.5164.9402
g08088arabidopsis_hallerig08088.t12524.4898olea_europaeaOE9A115724C19896
g08088arabidopsis_hallerig08088.t192.857183.1633olea_europaeaOE9A014302C172.5164.9402
g08088arabidopsis_hallerig08088.t194.89884.1837eucalyptus_grandisKCW7154193.939483.3333
g08088arabidopsis_hallerig08088.t17555.102cyanidioschyzon_merolaeCML046CT7555.102
g08088arabidopsis_hallerig08088.t192.857184.1837daucus_carotaKZM9381091.919283.3333
g08088arabidopsis_hallerig08088.t141.326536.2245daucus_carotaKZN0453157.042350
g08088arabidopsis_hallerig08088.t189.795978.5714digitaria_exilisDexi4A01G0004240.1:cds8070
g08088arabidopsis_hallerig08088.t190.816379.5918digitaria_exilisDexi4B01G0006660.1:cds89.447278.392
g08088arabidopsis_hallerig08088.t189.285779.0816eragrostis_tefEt_2B_020721.CDS82.159672.77
g08088arabidopsis_hallerig08088.t189.285778.5714eragrostis_tefEt_2A_016556.CDS86.206975.8621
g08088arabidopsis_hallerig08088.t188.775578.5714triticum_dicoccoidesTRIDC7BG002060.386.567276.6169
g08088arabidopsis_hallerig08088.t188.775577.551triticum_dicoccoidesTRIDC7AG013740.483.253672.7273
g08088arabidopsis_hallerig08088.t1100100arabidopsis_lyrataAl_scaffold_0001_2651100100
g08088arabidopsis_hallerig08088.t172.959263.2653saccharum_spontaneumSspon.08G0014460-2D-mRNA-1:cds85.628774.2515
g08088arabidopsis_hallerig08088.t154.591850.5102saccharum_spontaneumSspon.08G0014460-1A-mRNA-1:cds96.396489.1892
g08088arabidopsis_hallerig08088.t184.693973.9796nymphaea_colorataNC9G0112890.1:cds76.146866.5138
g08088arabidopsis_hallerig08088.t189.285779.0816echinochloa_crusgalliscaffold367.4.cds87.939777.8895
g08088arabidopsis_hallerig08088.t188.265377.551echinochloa_crusgalliscaffold10.324.cds87.373776.7677
g08088arabidopsis_hallerig08088.t188.265377.551echinochloa_crusgalliscaffold34.443.cds81.220771.3615
g08088arabidopsis_hallerig08088.t196.938889.2857brassica_oleraceaBo4g196100.183.333376.7544
g08088arabidopsis_hallerig08088.t170.918461.7347corchorus_capsularisOMO6436192.666780.6667
g08088arabidopsis_hallerig08088.t188.265377.551oryza_nivaraONIVA06G05240.182.775172.7273
g08088arabidopsis_hallerig08088.t189.795980.6122trifolium_pratenseTp57577_TGAC_v2_mRNA485888.888979.798
g08088arabidopsis_hallerig08088.t163.775553.5714cynara_cardunculusKVH9727762.189152.2388

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression