Description

Ensembl ID g07575 Gene ID Accession -
Symbol Alias - Full Name Replication protein A 70 kDa DNA-binding subunit C
Status Confidence Length 2986 bases Strand Plus strand
Position FJVB01000015.1 : 9436 - 12421 RNA binding domain tRNA_anti-codon
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
g07575 tRNA_anti-codon PF01336 1.1e-13 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- g07575.t1 2895 840aa g07575.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g07575arabidopsis_hallerig15405.t178.371266.8892arabidopsis_hallerig07575.t169.88159.6429
g07575arabidopsis_hallerig18478.t170.781251.5625arabidopsis_hallerig07575.t153.928639.2857
g07575arabidopsis_hallerig28300.t137.209313.9535arabidopsis_hallerig07575.t17.619052.85714
g07575arabidopsis_hallerig30064.t130.402914.4689arabidopsis_hallerig07575.t119.76199.40476
g07575arabidopsis_hallerig29160.t116.82247.68432arabidopsis_hallerig07575.t119.28578.80952
g07575arabidopsis_hallerig27336.t132.897617.4292arabidopsis_hallerig07575.t117.97629.52381
g07575arabidopsis_hallerig20593.t134.417316.2602arabidopsis_hallerig07575.t115.1197.14286
g07575arabidopsis_hallerig25519.t116.97137.04961arabidopsis_hallerig07575.t115.47626.42857
g07575arabidopsis_hallerig08592.t135.135115.8784arabidopsis_hallerig07575.t112.3815.59524
g07575arabidopsis_hallerig00488.t130.817615.7233arabidopsis_hallerig07575.t117.58.92857
g07575arabidopsis_hallerig02225.t116.3838.61702arabidopsis_hallerig07575.t118.33339.64286
g07575arabidopsis_hallerig18826.t133.439515.9236arabidopsis_hallerig07575.t112.55.95238
g07575arabidopsis_hallerig22179.t126.69412.5257arabidopsis_hallerig07575.t115.47627.2619
g07575arabidopsis_hallerig31737.t125.211911.8644arabidopsis_hallerig07575.t114.16676.66667
g07575arabidopsis_hallerig18671.t131.749115.2091arabidopsis_hallerig07575.t119.8819.52381
g07575arabidopsis_hallerig03308.t130.769215.8371arabidopsis_hallerig07575.t18.095244.16667
g07575arabidopsis_hallerig18727.t130.991714.6694arabidopsis_hallerig07575.t117.85718.45238
g07575arabidopsis_hallerig13382.t129.203513.9381arabidopsis_hallerig07575.t115.71437.5
g07575arabidopsis_hallerig19761.t134.782618.0602arabidopsis_hallerig07575.t112.3816.42857
g07575arabidopsis_hallerig25594.t216.9138.70279arabidopsis_hallerig07575.t112.26196.30952
g07575arabidopsis_hallerig31013.t129.549913.3072arabidopsis_hallerig07575.t117.97628.09524
g07575arabidopsis_hallerig31655.t129.432615.7801arabidopsis_hallerig07575.t119.761910.5952
g07575arabidopsis_hallerig09250.t133.779316.0535arabidopsis_hallerig07575.t112.02385.71429
g07575arabidopsis_hallerig31228.t137.209313.9535arabidopsis_hallerig07575.t19.523813.57143
g07575arabidopsis_hallerig19093.t128.725710.5832arabidopsis_hallerig07575.t115.83335.83333
g07575arabidopsis_hallerig23844.t153.311331.9536arabidopsis_hallerig07575.t138.333322.9762
g07575arabidopsis_hallerig10851.t152.614930.5864arabidopsis_hallerig07575.t139.523822.9762

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
g07575arabidopsis_hallerig07575.t136.547620.9524chondrus_crispusCDF3253947.303527.1186
g07575arabidopsis_hallerig07575.t144.047629.1667chlamydomonas_reinhardtiiPNW7041538.906425.7624
g07575arabidopsis_hallerig07575.t163.095248.2143papaver_somniferumRZC7396157.421543.8787
g07575arabidopsis_hallerig07575.t163.809549.1667papaver_somniferumRZC6951758.071544.7454
g07575arabidopsis_hallerig07575.t161.428649.6429cannabis_sativa_femalecds.evm.model.ctgX94.24032.3256
g07575arabidopsis_hallerig07575.t132.857126.3095cannabis_sativa_femalecds.evm.model.ctgX83.267.980354.4335
g07575arabidopsis_hallerig07575.t157.976242.7381physcomitrium_patensPp3c23_16880V3.256.431141.5991
g07575arabidopsis_hallerig07575.t158.095242.381physcomitrium_patensPp3c20_10450V3.155.141240.226
g07575arabidopsis_hallerig07575.t146.547637.0238ficus_caricaFCD_00027020-RA:cds69.946355.6351
g07575arabidopsis_hallerig07575.t165.952453.9286ficus_caricaFCD_00015461-RA:cds62.954551.4773
g07575arabidopsis_hallerig07575.t166.428652.5beta_vulgarisKMT1142164.733251.1601
g07575arabidopsis_hallerig07575.t165.595253.0952citrullus_lanatusCla97C10G185650.164.219151.9814
g07575arabidopsis_hallerig07575.t165.476252.8571cucumis_sativusKGN5569263.879251.5679
g07575arabidopsis_hallerig07575.t168.809555theobroma_cacaoEOY2532563.446850.7135
g07575arabidopsis_hallerig07575.t192.38187.5arabidopsis_thalianaAT5G45400.190.97386.1665
g07575arabidopsis_hallerig07575.t165.238153.0952cucumis_meloMELO3C013797.2.163.646951.8002
g07575arabidopsis_hallerig07575.t168.809553.8095populus_trichocarpaPotri.003G102700.1.v4.167.681552.9274
g07575arabidopsis_hallerig07575.t172.738164.0476brassica_junceacds.BjuB04g40220S79.76570.235
g07575arabidopsis_hallerig07575.t137.142930.7143brassica_junceacds.BjuB04g44010S68.122356.3319
g07575arabidopsis_hallerig07575.t173.571464.1667brassica_junceacds.BjuA09g51830S77.2567.375
g07575arabidopsis_hallerig07575.t168.452460.5952brassica_napusCDY2311879.972270.7928
g07575arabidopsis_hallerig07575.t168.333359.7619brassica_napusCDY1305080.61870.5056
g07575arabidopsis_hallerig07575.t128.809522.8571brassica_napusCDY2638065.760952.1739
g07575arabidopsis_hallerig07575.t155.476242.1429malus_domestica_goldenmRNA:MD06G001340069.760552.994
g07575arabidopsis_hallerig07575.t158.095241.7857marchantia_polymorphaPTQ3037255.328839.7959
g07575arabidopsis_hallerig07575.t165.833351.1905prunus_dulcisVVA1720663.344849.2554
g07575arabidopsis_hallerig07575.t165.714351.0714prunus_persicaONI0571863.230249.1409
g07575arabidopsis_hallerig07575.t159.523845.5952cajanus_cajanC.cajan_12406.t64.935149.7403
g07575arabidopsis_hallerig07575.t140.476228.3333glycine_maxKRH6347257.823140.4762
g07575arabidopsis_hallerig07575.t165.952450.2381lupinus_angustifoliusOIV9295065.099949.5887
g07575arabidopsis_hallerig07575.t19.880956.42857medicago_truncatulaAES9556561.481540
g07575arabidopsis_hallerig07575.t164.88150phaseolus_vulgarisESW3014962.93348.4988
g07575arabidopsis_hallerig07575.t162.61947.9762pisum_sativumPsat2g142080.1.cds59.43545.5367
g07575arabidopsis_hallerig07575.t164.761949.881vigna_radiataVradi11g07830.162.600748.2163
g07575arabidopsis_hallerig07575.t164.642950.4762vigna_unguiculataVigun02g101800.1.v1.262.199348.5682
g07575arabidopsis_hallerig07575.t164.523849.6429vigna_angularisKOM4541163.023348.4884
g07575arabidopsis_hallerig07575.t167.738152.2619manihot_esculentaOAY2429467.0251.7079
g07575arabidopsis_hallerig07575.t18.571436.07143manihot_esculentaOAY2430144.171831.2883
g07575arabidopsis_hallerig07575.t162.023848.4524capsicum_annuumPHT6209163.769949.8164
g07575arabidopsis_hallerig07575.t166.428651.0714solanum_tuberosumPGSC0003DMT40007928561.657547.4033
g07575arabidopsis_hallerig07575.t165.714350.5952solanum_lycopersicumSolyc08g075840.3.161.401647.2747
g07575arabidopsis_hallerig07575.t167.38153.6905sesamum_indicumSIN_1026236.t64.318251.25
g07575arabidopsis_hallerig07575.t158.452444.5238helianthus_annuusmRNA:HanXRQr2_Chr03g012381162.948747.9487
g07575arabidopsis_hallerig07575.t161.428647.5helianthus_annuusmRNA:HanXRQr2_Chr17g078634163.235348.8971
g07575arabidopsis_hallerig07575.t15038.4524lactuca_sativacds-PLY67262.165.62550.4688
g07575arabidopsis_hallerig07575.t125.714319.1667lactuca_sativacds-PLY67272.168.571451.1111
g07575arabidopsis_hallerig07575.t121.190516.7857lactuca_sativacds-PLY90764.165.441251.8382
g07575arabidopsis_hallerig07575.t161.428649.1667lactuca_sativacds-PLY90730.163.157950.5508
g07575arabidopsis_hallerig07575.t162.976249.1667ananas_comosusAco017615.1.mrna158.712545.838
g07575arabidopsis_hallerig07575.t122.142917.9762asparagus_officinalisONK6225253.295143.2665
g07575arabidopsis_hallerig07575.t116.42868.33333caenorhabditis_elegansR03H10.7.138.440119.4986
g07575arabidopsis_hallerig07575.t113.69057.61905caenorhabditis_elegansR03H10.6.135.493819.7531
g07575arabidopsis_hallerig07575.t132.976218.2143caenorhabditis_elegansF18A1.5.142.290123.3588
g07575arabidopsis_hallerig07575.t137.142924.0476drosophila_melanogasterFBpp008135651.741333.4992
g07575arabidopsis_hallerig07575.t154.047641.1905amborella_trichopodaERN1565356.892243.3584
g07575arabidopsis_hallerig07575.t17.54.7619corylus_avellanaCav03g10040.t1.cds165.62541.6667
g07575arabidopsis_hallerig07575.t19.047625.95238corylus_avellanaCav03g10050.t162.809941.3223
g07575arabidopsis_hallerig07575.t160.476247.7381corylus_avellanaCav03g10060.t1.cds163.899450.4403
g07575arabidopsis_hallerig07575.t166.785752.8571gossypium_raimondiiKJB5152465.537451.8692
g07575arabidopsis_hallerig07575.t140.11925.3571homo_sapiensENSP0000025471954.707834.5779
g07575arabidopsis_hallerig07575.t129.642919.881fraxinus_excelsiorFRAEX38873_v2_000102330.1.cds51.552834.5756
g07575arabidopsis_hallerig07575.t166.904852.619fraxinus_excelsiorFRAEX38873_v2_000233960.1.cds62.723249.3304
g07575arabidopsis_hallerig07575.t127.521.4286fraxinus_excelsiorFRAEX38873_v2_000349340.1.cds51.106239.823
g07575arabidopsis_hallerig07575.t169.047654.4048vitis_viniferaVitvi02g01153_P00165.759651.8141
g07575arabidopsis_hallerig07575.t166.666751.6667nicotiana_attenuataOIT0537361.67447.7974
g07575arabidopsis_hallerig07575.t167.857151.5476coffea_canephoraCDP1494065.44249.713
g07575arabidopsis_hallerig07575.t166.666752.9762pistacia_veracds-EVM0014593.132.520325.842
g07575arabidopsis_hallerig07575.t160.833348.2143quercus_subercds-POF15798.164.847751.3959
g07575arabidopsis_hallerig07575.t136.904822.8571galdieria_sulphurariaEME2626847.839529.6296
g07575arabidopsis_hallerig07575.t166.547652.0238chenopodium_quinoaAUR62018601-RA:cds64.105550.1147
g07575arabidopsis_hallerig07575.t166.666752.1429chenopodium_quinoaAUR62007386-RA:cds64.220250.2294
g07575arabidopsis_hallerig07575.t153.095241.6667dioscorea_rotundataDRNTG_28749.1.cds160.270347.2973
g07575arabidopsis_hallerig07575.t166.190551.4286citrus_clementinaESR4579664.801950.3497
g07575arabidopsis_hallerig07575.t168.333353.3333juglans_regiacds.Jr02_14200_p165.750351.3173
g07575arabidopsis_hallerig07575.t139.761923.5714ostreococcus_lucimarinusABO9952251.384630.4615
g07575arabidopsis_hallerig07575.t139.761923.5714ostreococcus_lucimarinusABO9955851.463830.5085
g07575arabidopsis_hallerig07575.t136.785722.0238saccharomyces_cerevisiaeYAR007C49.758529.7907
g07575arabidopsis_hallerig07575.t166.071453.2143actinidia_chinensisPSR9137165.914553.0879
g07575arabidopsis_hallerig07575.t167.554.6429actinidia_chinensisPSS0130265.172452.7586
g07575arabidopsis_hallerig07575.t164.166749.7619musa_acuminataMa06_p35210.261.647.7714
g07575arabidopsis_hallerig07575.t163.214348.8095musa_acuminataMa09_p03920.161.529547.5087
g07575arabidopsis_hallerig07575.t155.952440selaginella_moellendorffiiEFJ2876357.668741.227
g07575arabidopsis_hallerig07575.t151.904837.2619selaginella_moellendorffiiEFJ3071368.553549.2138
g07575arabidopsis_hallerig07575.t182.738172.5arabis_alpinaKFK3156779.337969.5205
g07575arabidopsis_hallerig07575.t139.761930.119quercus_lobataQL12p000754:mrna64.478848.8417
g07575arabidopsis_hallerig07575.t167.857153.6905quercus_lobataQL12p000778:mrna64.699251.1918
g07575arabidopsis_hallerig07575.t179.642970eutrema_salsugineumESQ3966783.729773.592
g07575arabidopsis_hallerig07575.t162.738148.9286kalanchoe_fedtschenkoiKaladp0048s0642.1.v1.163.724349.6977
g07575arabidopsis_hallerig07575.t120.952411.9048rosa_chinensisPRQ1860841.025623.31
g07575arabidopsis_hallerig07575.t163.452447.381rosa_chinensisPRQ1909957.497342.9342
g07575arabidopsis_hallerig07575.t117.976211.7857chara_brauniiGBG9243555.109536.1314
g07575arabidopsis_hallerig07575.t155.714339.5238chara_brauniiGBG8276250.759236.0087
g07575arabidopsis_hallerig07575.t141.785725.8333chara_brauniiGBG8340533.301720.5882
g07575arabidopsis_hallerig07575.t166.309550.8333corymbia_citriodoracds-KAF8033490.164.542349.4786
g07575arabidopsis_hallerig07575.t173.690564.4048brassica_rapa_ro18A09p025530.1_BraROA.176.231566.6256
g07575arabidopsis_hallerig07575.t179.88169.6429brassica_rapa_ro18A02p042100.1_BraROA.180.940970.5669
g07575arabidopsis_hallerig07575.t143.095230.2381olea_europaeaOE9A074127C158.766241.2338
g07575arabidopsis_hallerig07575.t113.45249.40476olea_europaeaOE9A039616C147.083332.9167
g07575arabidopsis_hallerig07575.t123.928617.1429olea_europaeaOE9A097411C154.177938.814
g07575arabidopsis_hallerig07575.t165.714349.5238eucalyptus_grandisKCW7843761.061946.0177
g07575arabidopsis_hallerig07575.t135.833323.6905cyanidioschyzon_merolaeCMC123CT45.399730.0151
g07575arabidopsis_hallerig07575.t188.452480.2381camelina_sativaCsa20g076180.183.57775.8155
g07575arabidopsis_hallerig07575.t188.333380.8333camelina_sativaCsa18g005890.184.12776.9841
g07575arabidopsis_hallerig07575.t188.809581.5476camelina_sativaCsa11g067900.180.215173.6559
g07575arabidopsis_hallerig07575.t195.357194.2857arabidopsis_lyratafgenesh1_pm.C_scaffold_100252897.445396.3504
g07575arabidopsis_hallerig07575.t160.238146.3095nymphaea_colorataNC4G0021320.1:cds60.381946.42
g07575arabidopsis_hallerig07575.t173.809565.119brassica_oleraceaBo9g061490.174.162765.4306
g07575arabidopsis_hallerig07575.t18069.5238brassica_oleraceaBo2g127130.180.575570.024
g07575arabidopsis_hallerig07575.t167.142950.8333corchorus_capsularisOMO8931964.97749.1936
g07575arabidopsis_hallerig07575.t156.785743.8095trifolium_pratenseTp57577_TGAC_v2_mRNA1787866.158151.0402
g07575arabidopsis_hallerig07575.t159.642945.8333cynara_cardunculusKVH9134260.144146.2185
g07575arabidopsis_hallerig07575.t162.61948.4524cynara_cardunculusKVH9562563.912549.4532

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression